Miyakogusa Predicted Gene

Lj0g3v0246299.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0246299.1 Non Characterized Hit- tr|I1M710|I1M710_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.10202
PE,86.39,0,WD40,WD40 repeat; WD_REPEATS_2,WD40 repeat;
WD_REPEATS_REGION,WD40-repeat-containing domain; LISH,Li,CUFF.16091.1
         (303 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g090420.1 | transducin/WD40 repeat protein | HC | chr5:393...   440   e-124
Medtr3g449990.1 | transducin/WD40 repeat protein | HC | chr3:171...   393   e-109
Medtr3g449950.1 | transducin family protein/WD-40 repeat protein...   266   1e-71
Medtr1g069345.1 | transducin/WD40 repeat protein | HC | chr1:299...   180   1e-45

>Medtr5g090420.1 | transducin/WD40 repeat protein | HC |
           chr5:39373338-39377755 | 20130731
          Length = 572

 Score =  440 bits (1131), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/294 (74%), Positives = 240/294 (81%), Gaps = 1/294 (0%)

Query: 1   MGGVEDEEPALKRMKXXXXXXXXXXXXXXXXXXXXXFLSDSMARPLPSHGDEQVVGSKGV 60
           MGGV+DEEPALKRMK                     F SDSMAR LPS GD+QVVGSKGV
Sbjct: 1   MGGVDDEEPALKRMKLSAKGLVGLANGSSSKEPVGGFSSDSMARLLPSEGDDQVVGSKGV 60

Query: 61  IKRDEFVRIIAKALYSLGYRKSGAHLEEESGIPLHSPGVNMFIQQILDGNWDDSIATLHT 120
           IKRDEFVRIIAKALYSLGYRKSGA LEEESGIPLHSPGVN+F QQ+LDGNWD+S+ATL  
Sbjct: 61  IKRDEFVRIIAKALYSLGYRKSGARLEEESGIPLHSPGVNLFTQQVLDGNWDESVATLRK 120

Query: 121 VGLADESVVRSASFLILEQKFFELLHAEKVMEALKTLRTEISPLSVYSNRIRELSSCIVS 180
           +GL D+++VRSAS LILEQKFFELL+  KVMEALKTLR EI+PL   S+RIRELSSC+VS
Sbjct: 121 IGLTDDTIVRSASCLILEQKFFELLNGGKVMEALKTLREEITPLCRDSSRIRELSSCLVS 180

Query: 181 PSPKQDILEVRSRSXXXXXXXXXXXXTVMIPEKRLEHLVEQALILQREACLFHNSLDKEM 240
           PSPKQDI++VRSRS            TVMIPEKRLEHLVEQAL LQREAC FHNSLD +M
Sbjct: 181 PSPKQDIVKVRSRSKLLEELQKLLPPTVMIPEKRLEHLVEQALTLQREACPFHNSLD-QM 239

Query: 241 SLYSDHHCGKDQIPSKTLQILEAHDDEVWLVQFSHNGKYLASASNDRTAIIWEV 294
           SLYSDHHCGKD IPS+T+QILE HDDEVW VQFSHNGKYLASASND+TAIIWEV
Sbjct: 240 SLYSDHHCGKDLIPSRTVQILETHDDEVWFVQFSHNGKYLASASNDQTAIIWEV 293


>Medtr3g449990.1 | transducin/WD40 repeat protein | HC |
           chr3:17129213-17120938 | 20130731
          Length = 581

 Score =  393 bits (1009), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/299 (65%), Positives = 231/299 (77%), Gaps = 5/299 (1%)

Query: 1   MGGVEDEEPALKRMKXXXXXXXXXXXXXXXXXXXXXFLSDSMARPLPSHGDEQVVGSKGV 60
           MGGVEDEEPALKR K                       S+ MARPL S GD +VVGSKG+
Sbjct: 1   MGGVEDEEPALKRTKLLSKGLNSLSNGSSSVERVVGSSSELMARPLSSEGDNEVVGSKGI 60

Query: 61  IKRDEFVRIIAKALYSLGYRKSGAHLEEESGIPLHSPGVNMFIQQILDGNWDDSIATLHT 120
           IK+ EFVRII KALYSLGY+K+G +LEEESGIPL+S  VN+F+QQ+LDG+W++S++TL+ 
Sbjct: 61  IKKGEFVRIITKALYSLGYKKTGENLEEESGIPLNSSVVNVFMQQVLDGDWEESVSTLNK 120

Query: 121 VGLADESVVRSASFLILEQKFFELLHAEKVMEALKTLRTEISPLSVYSNRIRELSSCIVS 180
           +GL DE +VR+ASFLILEQKFFELL  +KVM+ALKTLRTEI+ L V S RIRELSSC++S
Sbjct: 121 IGLEDERIVRAASFLILEQKFFELLDGDKVMDALKTLRTEITELCVDSARIRELSSCLLS 180

Query: 181 PSPK-----QDILEVRSRSXXXXXXXXXXXXTVMIPEKRLEHLVEQALILQREACLFHNS 235
           PS +     +D +  ++R             TVMIPE RLEHLVEQALILQR+AC FHNS
Sbjct: 181 PSDQCGSSGRDFIRAKTRLKLLEELQKLIPPTVMIPENRLEHLVEQALILQRDACSFHNS 240

Query: 236 LDKEMSLYSDHHCGKDQIPSKTLQILEAHDDEVWLVQFSHNGKYLASASNDRTAIIWEV 294
           LDKEMSLYSDHHCGK QIPS+TLQIL+AHDDEVW VQFSH+GKYLA+ASNDRTAIIWEV
Sbjct: 241 LDKEMSLYSDHHCGKTQIPSRTLQILDAHDDEVWFVQFSHDGKYLATASNDRTAIIWEV 299


>Medtr3g449950.1 | transducin family protein/WD-40 repeat protein |
           HC | chr3:17110234-17112881 | 20130731
          Length = 311

 Score =  266 bits (681), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 147/289 (50%), Positives = 188/289 (65%), Gaps = 14/289 (4%)

Query: 1   MGGVEDEEPALKRMKXXXXXXXXXXXXXXXXXXXXXFLSDSMARPLPSHGDEQVVGSKGV 60
           MGGVEDEEPA KR K                       SD MA PL + GD++VVG+KG 
Sbjct: 1   MGGVEDEEPATKRTKLSPNSSSSMEHVVGST-------SDLMAPPLSAEGDDEVVGTKGS 53

Query: 61  IKRDEFVRIIAKALYSLGYRKSGAHLEEESGIPLHSPGVNMFIQQILDGNWDDSIATLHT 120
           +KR EFVR+I KA+YSLGY+KSG HLEEESGIPL+S  VN+F+QQ+LDG+WD+S+ATL  
Sbjct: 54  LKRREFVRMITKAMYSLGYKKSGEHLEEESGIPLNSSAVNLFMQQVLDGDWDESLATLKQ 113

Query: 121 VGLADESVVRSASFLILEQKFFELLHAEKVMEALKTLRTEISPLSVYSNRIRELSSCIV- 179
           +GL DES+V++AS LILEQKFFEL+  +KV+EAL TLR +I+ L V S RIRELSSC + 
Sbjct: 114 IGLEDESIVKAASLLILEQKFFELIDGDKVIEALNTLRNQITQLCVDSTRIRELSSCFLS 173

Query: 180 ----SPSPKQDILEVRSRSXXXXXXXXXXXXTVMIPEKRLEHLVEQALILQREACLFHNS 235
                 S  +D +  ++R             TVMIPEKRLEHLVEQAL ++R A L  N 
Sbjct: 174 PSGQGGSSGRDFVRAKTRLKLLEELQKLFPSTVMIPEKRLEHLVEQALTMERVASLCRNV 233

Query: 236 LDKEMSLYSDHHCGKDQIPSKTLQILEAHDD-EVWLVQFSHNGKYLASA 283
           LDK+MS  SD   G+ QIP+       A DD E   +  +  G+++++A
Sbjct: 234 LDKKMSSCSDDF-GQSQIPTNQAYTSVASDDNESVNLSRADFGRFVSTA 281


>Medtr1g069345.1 | transducin/WD40 repeat protein | HC |
           chr1:29955415-29960832 | 20130731
          Length = 507

 Score =  180 bits (457), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 99/250 (39%), Positives = 147/250 (58%), Gaps = 3/250 (1%)

Query: 53  QVVGSKGVIKRDEFVRIIAKALYSLGYRKSGAHLEEESGIPLHSPGVNMFIQQILDGNWD 112
           + +GSKG+I + EF+RII ++LYSLGY K+ + LE ESG+   S    +    +L+GNW+
Sbjct: 7   ETLGSKGLINKHEFIRIILQSLYSLGYTKTASLLESESGVSYKSNEFQLLESHVLNGNWE 66

Query: 113 DSIATLHTVGLADESVVRSASFLILEQKFFELLHAEKVMEALKTLRTEISPLSVYSNRIR 172
             +  L+++       V SA FL+  Q   E L   +   AL  LR  +S L V   ++ 
Sbjct: 67  ACVTFLNSITEILGESVESALFLVFRQTVMEYLKRGEDGLALDVLRKRVSALRVDRFKVH 126

Query: 173 ELSSCIVSPSPKQDILEVRSRSXXXXXXXXXXXXTVMIPEKRLEHLVEQALILQREACLF 232
            L++ +V+ +   +++E   R              + IP+ RLEHLVE  +    ++CL+
Sbjct: 127 SLANSVVNLN--DEVVEGDLRGKLLMDLEKLLPPPISIPDGRLEHLVETTVTAWVDSCLY 184

Query: 233 HNSLDKEMSLYSDHHCGKDQIPSKTLQILEAHDDEVWLVQFSHNGKYLASASNDRTAIIW 292
           H+SL+  +SLY DH CG+D  P+ T QIL  H +EVW VQFS++G YLAS+SND TAIIW
Sbjct: 185 HSSLNP-VSLYEDHSCGRDHFPTTTTQILTGHKNEVWFVQFSNSGDYLASSSNDCTAIIW 243

Query: 293 EVIFDIELIL 302
           +V  D +L L
Sbjct: 244 KVQEDGKLTL 253