Miyakogusa Predicted Gene

Lj0g3v0244099.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0244099.1 Non Characterized Hit- tr|B8ACT4|B8ACT4_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,66.67,0.058,PROTEIN RER1,Retrieval of early ER protein Rer1;
seg,NULL; Rer1,Retrieval of early ER protein Rer1,CUFF.16071.1
         (194 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g070400.1 | ATRER1A | HC | chr4:26526416-26523268 | 20130731    259   1e-69
Medtr4g070400.2 | ATRER1A | HC | chr4:26526185-26523282 | 20130731    259   1e-69
Medtr4g094930.1 | ATRER1A | HC | chr4:39306869-39304054 | 20130731    217   5e-57
Medtr5g016560.1 | ATRER1A | HC | chr5:5950897-5953021 | 20130731      192   2e-49
Medtr5g016560.2 | ATRER1A | HC | chr5:5950897-5952565 | 20130731      191   3e-49

>Medtr4g070400.1 | ATRER1A | HC | chr4:26526416-26523268 | 20130731
          Length = 197

 Score =  259 bits (663), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 132/176 (75%), Positives = 142/176 (80%), Gaps = 2/176 (1%)

Query: 1   MEGTGGXXXXXXXPVN-QWWLEFSKMFQYYLDKSTPHTTYRWIGTVVIASIYVLRVFYVQ 59
           MEG GG           QWW +FSK+FQ+YLDKSTPH+TYRWIGT VIASIY LRVFY+Q
Sbjct: 1   MEGPGGSSASATAATPPQWWQDFSKLFQHYLDKSTPHSTYRWIGTFVIASIYGLRVFYLQ 60

Query: 60  GFYIVSXXXXXXXXXXXXXXXSPLVDPEVEHSDG-PLLPTKGSDEFKPFIRRLPEFKFWY 118
           GFYIVS               SPLVDPE+E SDG PLLPTKGSDEFKPFIRRLPEFKFWY
Sbjct: 61  GFYIVSYGLGIYMLNLLIGFLSPLVDPELEPSDGGPLLPTKGSDEFKPFIRRLPEFKFWY 120

Query: 119 SFTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLNL 174
           SFTKAF IAF+MTFFSVFDVPVFWPILLCYW+VLFVLTMRRQIAHMIKY+YIP +L
Sbjct: 121 SFTKAFLIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKYRYIPFSL 176


>Medtr4g070400.2 | ATRER1A | HC | chr4:26526185-26523282 | 20130731
          Length = 197

 Score =  259 bits (663), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 132/176 (75%), Positives = 142/176 (80%), Gaps = 2/176 (1%)

Query: 1   MEGTGGXXXXXXXPVN-QWWLEFSKMFQYYLDKSTPHTTYRWIGTVVIASIYVLRVFYVQ 59
           MEG GG           QWW +FSK+FQ+YLDKSTPH+TYRWIGT VIASIY LRVFY+Q
Sbjct: 1   MEGPGGSSASATAATPPQWWQDFSKLFQHYLDKSTPHSTYRWIGTFVIASIYGLRVFYLQ 60

Query: 60  GFYIVSXXXXXXXXXXXXXXXSPLVDPEVEHSDG-PLLPTKGSDEFKPFIRRLPEFKFWY 118
           GFYIVS               SPLVDPE+E SDG PLLPTKGSDEFKPFIRRLPEFKFWY
Sbjct: 61  GFYIVSYGLGIYMLNLLIGFLSPLVDPELEPSDGGPLLPTKGSDEFKPFIRRLPEFKFWY 120

Query: 119 SFTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLNL 174
           SFTKAF IAF+MTFFSVFDVPVFWPILLCYW+VLFVLTMRRQIAHMIKY+YIP +L
Sbjct: 121 SFTKAFLIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKYRYIPFSL 176


>Medtr4g094930.1 | ATRER1A | HC | chr4:39306869-39304054 | 20130731
          Length = 192

 Score =  217 bits (553), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 104/160 (65%), Positives = 123/160 (76%), Gaps = 1/160 (0%)

Query: 15  VNQWWLEFSKMFQYYLDKSTPHTTYRWIGTVVIASIYVLRVFYVQGFYIVSXXXXXXXXX 74
           + +W  E S+ +Q+ LDKSTPH + RW+G +V+A +YVLRV+ VQGFY+VS         
Sbjct: 12  ITRWKFEASRRYQHILDKSTPHVSQRWLGCLVVALVYVLRVYIVQGFYVVSYGLGIYILN 71

Query: 75  XXXXXXSPLVDPEVEHSD-GPLLPTKGSDEFKPFIRRLPEFKFWYSFTKAFCIAFVMTFF 133
                 SP VDPE+  +D GP LPT GSDEF+PF+RRLPEFKFWYS TKAFCIAFVMTFF
Sbjct: 72  LLIGFLSPQVDPEILDADNGPSLPTSGSDEFRPFVRRLPEFKFWYSITKAFCIAFVMTFF 131

Query: 134 SVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLN 173
           S FDVPVFWPILL YW+VLF LTMRRQIAHMIKYKY+P +
Sbjct: 132 SAFDVPVFWPILLFYWVVLFTLTMRRQIAHMIKYKYVPFS 171


>Medtr5g016560.1 | ATRER1A | HC | chr5:5950897-5953021 | 20130731
          Length = 208

 Score =  192 bits (487), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 91/151 (60%), Positives = 112/151 (74%), Gaps = 1/151 (0%)

Query: 24  KMFQYYLDKSTPHTTYRWIGTVVIASIYVLRVFYVQGFYIVSXXXXXXXXXXXXXXXSPL 83
           + +Q+ LDK+TPH   RWIG  V+A IY+LRV+ ++GFYIV+               SP 
Sbjct: 36  QQYQHVLDKTTPHVLPRWIGFSVVAFIYILRVYLLEGFYIVTYGLGIYILNLLIGFLSPQ 95

Query: 84  VDPEV-EHSDGPLLPTKGSDEFKPFIRRLPEFKFWYSFTKAFCIAFVMTFFSVFDVPVFW 142
           VDP + + +DGP LP + SDEF+PF+RRLPEFKFWYS T AFCIA VMTF S FD+PVFW
Sbjct: 96  VDPAIADAADGPTLPIRASDEFRPFVRRLPEFKFWYSITVAFCIAIVMTFSSAFDIPVFW 155

Query: 143 PILLCYWIVLFVLTMRRQIAHMIKYKYIPLN 173
           PILL YW+VLF LTMRRQI+HMIKY+Y+P N
Sbjct: 156 PILLFYWVVLFSLTMRRQISHMIKYRYVPFN 186


>Medtr5g016560.2 | ATRER1A | HC | chr5:5950897-5952565 | 20130731
          Length = 192

 Score =  191 bits (486), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 91/151 (60%), Positives = 112/151 (74%), Gaps = 1/151 (0%)

Query: 24  KMFQYYLDKSTPHTTYRWIGTVVIASIYVLRVFYVQGFYIVSXXXXXXXXXXXXXXXSPL 83
           + +Q+ LDK+TPH   RWIG  V+A IY+LRV+ ++GFYIV+               SP 
Sbjct: 36  QQYQHVLDKTTPHVLPRWIGFSVVAFIYILRVYLLEGFYIVTYGLGIYILNLLIGFLSPQ 95

Query: 84  VDPEV-EHSDGPLLPTKGSDEFKPFIRRLPEFKFWYSFTKAFCIAFVMTFFSVFDVPVFW 142
           VDP + + +DGP LP + SDEF+PF+RRLPEFKFWYS T AFCIA VMTF S FD+PVFW
Sbjct: 96  VDPAIADAADGPTLPIRASDEFRPFVRRLPEFKFWYSITVAFCIAIVMTFSSAFDIPVFW 155

Query: 143 PILLCYWIVLFVLTMRRQIAHMIKYKYIPLN 173
           PILL YW+VLF LTMRRQI+HMIKY+Y+P N
Sbjct: 156 PILLFYWVVLFSLTMRRQISHMIKYRYVPFN 186