Miyakogusa Predicted Gene

Lj0g3v0243579.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0243579.1 Non Characterized Hit- tr|F6HF07|F6HF07_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,82.98,3e-16,coiled-coil,NULL; TRANSCRIPTION INITIATION FACTOR IIE,
ALPHA SUBUNIT,NULL; no description,Winged hel,CUFF.15912.1
         (89 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g077000.1 | transcription initiation factor IIE, putative ...   153   3e-38

>Medtr8g077000.1 | transcription initiation factor IIE, putative |
          HC | chr8:32692655-32682881 | 20130731
          Length = 479

 Score =  153 bits (387), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 74/89 (83%), Positives = 82/89 (92%)

Query: 1  MIEPYNKLVKLAARAFYDDLTSKGDNQPKSGRSDNRGIAVVVLDALTRRQWVREEDLAKD 60
          MIEPYNKLVKLAARAFYDD TSKGD+QPK+GRSDNRGI VV+LDALTR+QWVREEDLAKD
Sbjct: 1  MIEPYNKLVKLAARAFYDDPTSKGDDQPKTGRSDNRGIDVVILDALTRKQWVREEDLAKD 60

Query: 61 LKLHTKQLRRTLRFFEEEKIITRDHRREV 89
          LKL+TK+LRR L+ F EEKIITRD R+E 
Sbjct: 61 LKLNTKELRRRLQSFAEEKIITRDQRKET 89