Miyakogusa Predicted Gene

Lj0g3v0242879.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0242879.2 tr|A9SSD6|A9SSD6_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_134439,39.31,0.000000000000005,seg,NULL; eIF-4B,Plant
specific eukaryotic initiation factor 4B; coiled-coil,NULL; SUBFAMILY
NOT NAM,CUFF.16077.2
         (316 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g089785.1 | plant-specific eukaryotic initiation factor 4B...   309   3e-84
Medtr4g074040.1 | plant-specific eukaryotic initiation factor 4B...    50   3e-06

>Medtr8g089785.1 | plant-specific eukaryotic initiation factor 4B |
           HC | chr8:37419900-37412273 | 20130731
          Length = 529

 Score =  309 bits (791), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 164/257 (63%), Positives = 181/257 (70%), Gaps = 2/257 (0%)

Query: 47  LVLDPRKGDGSVNETPPAMTNKPSPFGAARPREEVLAQKGLDWKKLDSEIEAKKAX--XX 104
           LVLDPRKGD SVNE+P   TNKP+PFGAARPREEVLA+KG DWKKLDSEIEAKK      
Sbjct: 258 LVLDPRKGDSSVNESPVVKTNKPNPFGAARPREEVLAEKGYDWKKLDSEIEAKKTSRPTS 317

Query: 105 XXXXXXXXXXXXXXEGPDAVLKPRPKVNPFGEAKPREVLLAERGADWRKIDLELERRGVD 164
                         EG D  LKPRPKVNPFG+AKPREVLL+ERG DWRK+DLELE R VD
Sbjct: 318 SHSSRPSSAQSNRSEGQDGALKPRPKVNPFGDAKPREVLLSERGKDWRKMDLELEHRAVD 377

Query: 165 RPXXXXXXXXXXXXXXXXXXXXXXPKMNSNQESADEAGANQTGAHAXXXXXXXXXXXXIH 224
           RP                        +NSN+ESAD +G +QTG HA            I 
Sbjct: 378 RPETIEEKLLKEEIDNLKKQLENESTVNSNEESADGSGGDQTGTHAMLLEKERELELLIR 437

Query: 225 DLDDKVRFGQKAVDRPGSSAGRTPVLSDRPPSRSGSFEDSRSVDFSDRPRSRGTGDAWMR 284
           DLDDKVRFGQKAV+RPGSSAG+T   SDRPPSRSGSFEDSRSVDF+DRPRSRGTGD  MR
Sbjct: 438 DLDDKVRFGQKAVERPGSSAGKTAGFSDRPPSRSGSFEDSRSVDFTDRPRSRGTGDTSMR 497

Query: 285 PSDDRRQFQGSRERGFF 301
           P+DDRRQFQGS++RG+F
Sbjct: 498 PTDDRRQFQGSKDRGWF 514


>Medtr4g074040.1 | plant-specific eukaryotic initiation factor 4B |
           HC | chr4:28133905-28131623 | 20130731
          Length = 391

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 29/36 (80%), Gaps = 1/36 (2%)

Query: 124 VLKPRPKVNPFGEAKPREVLLAERGADWRKIDLELE 159
           V KP+   NPFGEA+PRE +LAE+G DW+KID +LE
Sbjct: 299 VAKPKG-ANPFGEARPREQVLAEKGQDWKKIDEQLE 333



 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 36/68 (52%), Gaps = 14/68 (20%)

Query: 47  LVLDPRKGDGSVNETPPAMTN-----------KP---SPFGAARPREEVLAQKGLDWKKL 92
           LVL PR    S        TN           KP   +PFG ARPRE+VLA+KG DWKK+
Sbjct: 269 LVLQPRTAPVSNENQDAVATNTNGGVVSGNVAKPKGANPFGEARPREQVLAEKGQDWKKI 328

Query: 93  DSEIEAKK 100
           D ++E  K
Sbjct: 329 DEQLETMK 336