Miyakogusa Predicted Gene

Lj0g3v0242609.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0242609.1 tr|A9SI01|A9SI01_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_185181,46.05,0.0000000000003,SUBFAMILY NOT NAMED,NULL;
SEC3/SYNTAXIN-RELATED,NULL,CUFF.15848.1
         (156 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g021680.1 | exocyst complex component SEC3B | HC | chr1:65...   284   3e-77
Medtr3g111590.1 | exocyst complex component SEC3B | HC | chr3:52...   268   2e-72

>Medtr1g021680.1 | exocyst complex component SEC3B | HC |
           chr1:6557770-6543295 | 20130731
          Length = 884

 Score =  284 bits (726), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 137/157 (87%), Positives = 146/157 (92%), Gaps = 1/157 (0%)

Query: 1   MAKSSADDVELRRACEAAIEDPKQKIVLSLRVAKSNGILGKSSKLG-RQMAKPRVLALST 59
           MAKS+ DDVELRRACE+AIEDPKQKI+LS+RVAKS+GILGKSSKL  R MAKPRVLALST
Sbjct: 1   MAKSTGDDVELRRACESAIEDPKQKIILSIRVAKSHGILGKSSKLSSRHMAKPRVLALST 60

Query: 60  NSKGQRPTAFLRVFKYSTGGVLEPAKLYKLKHLSKVEVIANDPSGCTFTLGFDNLRSQSV 119
            +KGQ  TAFLRV KYSTGGVLEPAKLYKL+HLSKVEV+ NDPSGCTFTLGFDNLRSQSV
Sbjct: 61  LTKGQTTTAFLRVLKYSTGGVLEPAKLYKLRHLSKVEVLTNDPSGCTFTLGFDNLRSQSV 120

Query: 120 APPQWTMRNTDDRNRLLLCILTICKDVLGRLPKVVGV 156
           APPQWTMRN DDRNRLLLCILTI KDVLGRLPKVVG+
Sbjct: 121 APPQWTMRNIDDRNRLLLCILTISKDVLGRLPKVVGI 157


>Medtr3g111590.1 | exocyst complex component SEC3B | HC |
           chr3:52159615-52142380 | 20130731
          Length = 878

 Score =  268 bits (684), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 125/156 (80%), Positives = 138/156 (88%)

Query: 1   MAKSSADDVELRRACEAAIEDPKQKIVLSLRVAKSNGILGKSSKLGRQMAKPRVLALSTN 60
           MAKSSADD ELRRACEAAIE  KQKIV+S+RV K++G  GK++KLGRQMAKPRVLA+ST 
Sbjct: 1   MAKSSADDAELRRACEAAIEGTKQKIVISIRVVKTHGTWGKAAKLGRQMAKPRVLAISTK 60

Query: 61  SKGQRPTAFLRVFKYSTGGVLEPAKLYKLKHLSKVEVIANDPSGCTFTLGFDNLRSQSVA 120
           +K QR  AFLRV KYS GGVLEPAK+YKLKHLSKVEV+ NDPSGCTFTLGFDNLR+ +VA
Sbjct: 61  AKTQRTKAFLRVLKYSNGGVLEPAKIYKLKHLSKVEVVTNDPSGCTFTLGFDNLRNHTVA 120

Query: 121 PPQWTMRNTDDRNRLLLCILTICKDVLGRLPKVVGV 156
           PPQWTMRN DDRNRLLL  L ICKDVLGRLPKVVG+
Sbjct: 121 PPQWTMRNIDDRNRLLLSTLNICKDVLGRLPKVVGI 156