Miyakogusa Predicted Gene

Lj0g3v0242399.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0242399.1 tr|E9HLF4|E9HLF4_DAPPU Ubiquitin
carboxyl-terminal hydrolase OS=Daphnia pulex GN=DAPPUDRAFT_261673
P,30.88,2e-18,seg,NULL; Cysteine proteinases,NULL; DUSP-like,NULL;
UCH_2_3,Peptidase C19, ubiquitin carboxyl-termi,CUFF.15851.1
         (314 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g010040.1 | ubiquitin carboxyl-terminal hydrolase | HC | c...   493   e-139
Medtr1g010040.2 | ubiquitin carboxyl-terminal hydrolase | HC | c...   492   e-139
Medtr3g108660.1 | ubiquitin carboxyl-terminal hydrolase | HC | c...   456   e-128
Medtr3g108660.2 | ubiquitin carboxyl-terminal hydrolase | HC | c...   455   e-128
Medtr8g015660.1 | ubiquitin carboxyl-terminal hydrolase | HC | c...    54   3e-07

>Medtr1g010040.1 | ubiquitin carboxyl-terminal hydrolase | HC |
           chr1:1703938-1713526 | 20130731
          Length = 1083

 Score =  493 bits (1268), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 235/314 (74%), Positives = 259/314 (82%)

Query: 1   MHHRLSEPPQCELIYDLSAVLIHKGTAANSGHYIAHIKDENTGQWWEFDDEHVTNLGRHP 60
           MHHRLSEP Q ELIYDLSAVLIHKGTAANSGHYIAHIKD NTGQWWEFDDE VTNLGR P
Sbjct: 330 MHHRLSEPSQSELIYDLSAVLIHKGTAANSGHYIAHIKDVNTGQWWEFDDELVTNLGRCP 389

Query: 61  FGEEASCPTSKSVKTDVDNSNISEAMVTDNNGNGLSTTHXXXXXXXXXXXXDAYMLMYHL 120
           F EEASC  SKSVK DV++SN SEA V D+NG+  +               DAYMLMYHL
Sbjct: 390 FAEEASCSASKSVKNDVNHSNFSEARVADSNGSASNVKVSQSLPMETFSSSDAYMLMYHL 449

Query: 121 KRTKNVDEKGGMVCGANHRESDDGAVTAHENGCLPSHFSEEIQNFNASYVDACEQYSHRK 180
           K TK   E GGM   ANH E+ D  +TA +N CLPSHF EEIQNFNASY+D C+QY+HRK
Sbjct: 450 KHTKIFSENGGMETSANHTETVDVPITAQDNDCLPSHFCEEIQNFNASYLDTCQQYNHRK 509

Query: 181 ELEVSRINERKQEVRSVLAEAPVQPLEQPYFWISSDWLRQWAENIIPTAIDNTSLQCSHG 240
           E+E+SRI+ER++EVRSVLAEAPVQPLEQPYFWI SDWLRQWAEN+ P+AIDNTS+QCSHG
Sbjct: 510 EVELSRISERREEVRSVLAEAPVQPLEQPYFWIYSDWLRQWAENVTPSAIDNTSIQCSHG 569

Query: 241 KVPVSKVASMKRLSSKAWDQLLSKYGGGPKLAHDDCCWDCLIDGAQNVVSADTYRDQRES 300
           KVPVSKV S KRLSSKAWD+LLSKYGGGP L+H+DCC DCLIDGA+NVVSADTYR QRES
Sbjct: 570 KVPVSKVTSTKRLSSKAWDKLLSKYGGGPTLSHEDCCLDCLIDGARNVVSADTYRHQRES 629

Query: 301 LKQLAREILDGNCE 314
            KQLAR+ILDG  E
Sbjct: 630 FKQLARDILDGKNE 643


>Medtr1g010040.2 | ubiquitin carboxyl-terminal hydrolase | HC |
           chr1:1703938-1713376 | 20130731
          Length = 1060

 Score =  492 bits (1267), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 235/314 (74%), Positives = 259/314 (82%)

Query: 1   MHHRLSEPPQCELIYDLSAVLIHKGTAANSGHYIAHIKDENTGQWWEFDDEHVTNLGRHP 60
           MHHRLSEP Q ELIYDLSAVLIHKGTAANSGHYIAHIKD NTGQWWEFDDE VTNLGR P
Sbjct: 330 MHHRLSEPSQSELIYDLSAVLIHKGTAANSGHYIAHIKDVNTGQWWEFDDELVTNLGRCP 389

Query: 61  FGEEASCPTSKSVKTDVDNSNISEAMVTDNNGNGLSTTHXXXXXXXXXXXXDAYMLMYHL 120
           F EEASC  SKSVK DV++SN SEA V D+NG+  +               DAYMLMYHL
Sbjct: 390 FAEEASCSASKSVKNDVNHSNFSEARVADSNGSASNVKVSQSLPMETFSSSDAYMLMYHL 449

Query: 121 KRTKNVDEKGGMVCGANHRESDDGAVTAHENGCLPSHFSEEIQNFNASYVDACEQYSHRK 180
           K TK   E GGM   ANH E+ D  +TA +N CLPSHF EEIQNFNASY+D C+QY+HRK
Sbjct: 450 KHTKIFSENGGMETSANHTETVDVPITAQDNDCLPSHFCEEIQNFNASYLDTCQQYNHRK 509

Query: 181 ELEVSRINERKQEVRSVLAEAPVQPLEQPYFWISSDWLRQWAENIIPTAIDNTSLQCSHG 240
           E+E+SRI+ER++EVRSVLAEAPVQPLEQPYFWI SDWLRQWAEN+ P+AIDNTS+QCSHG
Sbjct: 510 EVELSRISERREEVRSVLAEAPVQPLEQPYFWIYSDWLRQWAENVTPSAIDNTSIQCSHG 569

Query: 241 KVPVSKVASMKRLSSKAWDQLLSKYGGGPKLAHDDCCWDCLIDGAQNVVSADTYRDQRES 300
           KVPVSKV S KRLSSKAWD+LLSKYGGGP L+H+DCC DCLIDGA+NVVSADTYR QRES
Sbjct: 570 KVPVSKVTSTKRLSSKAWDKLLSKYGGGPTLSHEDCCLDCLIDGARNVVSADTYRHQRES 629

Query: 301 LKQLAREILDGNCE 314
            KQLAR+ILDG  E
Sbjct: 630 FKQLARDILDGKNE 643


>Medtr3g108660.1 | ubiquitin carboxyl-terminal hydrolase | HC |
           chr3:50189975-50179265 | 20130731
          Length = 1083

 Score =  456 bits (1172), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 214/313 (68%), Positives = 251/313 (80%)

Query: 1   MHHRLSEPPQCELIYDLSAVLIHKGTAANSGHYIAHIKDENTGQWWEFDDEHVTNLGRHP 60
           M HRL E  Q +L+YDLSAVLIHKGT  NSGHYIAHIKD+NTGQWWEFDDEHVTNLG HP
Sbjct: 330 MQHRLPELSQFDLVYDLSAVLIHKGTGVNSGHYIAHIKDKNTGQWWEFDDEHVTNLGNHP 389

Query: 61  FGEEASCPTSKSVKTDVDNSNISEAMVTDNNGNGLSTTHXXXXXXXXXXXXDAYMLMYHL 120
           FGE +S  T+KS+  D  +S+ SEA + ++NGNG  TTH            DAYMLMYHL
Sbjct: 390 FGEGSSSSTTKSIAIDAIHSDCSEARIAESNGNGFHTTHSQSSLIETFSSCDAYMLMYHL 449

Query: 121 KRTKNVDEKGGMVCGANHRESDDGAVTAHENGCLPSHFSEEIQNFNASYVDACEQYSHRK 180
           + TK + E GG+VCGA+H+E +    TA ++  LPSH  +EI N NASY+DAC+QYSHRK
Sbjct: 450 RHTKGIKENGGIVCGASHKEIEGVVATAQDDASLPSHLYDEICNVNASYLDACQQYSHRK 509

Query: 181 ELEVSRINERKQEVRSVLAEAPVQPLEQPYFWISSDWLRQWAENIIPTAIDNTSLQCSHG 240
           ELE+SRI +R+ EVRS+LAEAPV PLE+P++WISSDWLRQWA+NIIPT+IDNTS+QCSHG
Sbjct: 510 ELELSRITDRRHEVRSILAEAPVPPLERPFYWISSDWLRQWADNIIPTSIDNTSIQCSHG 569

Query: 241 KVPVSKVASMKRLSSKAWDQLLSKYGGGPKLAHDDCCWDCLIDGAQNVVSADTYRDQRES 300
           KVPVSKV S+KRLS KAWD+L SKYGG P L+HDD C DCLI GAQ VVSADTYR +RES
Sbjct: 570 KVPVSKVPSIKRLSVKAWDKLFSKYGGIPTLSHDDHCRDCLICGAQTVVSADTYRGRRES 629

Query: 301 LKQLAREILDGNC 313
           LK LAR+ILDGNC
Sbjct: 630 LKSLARDILDGNC 642


>Medtr3g108660.2 | ubiquitin carboxyl-terminal hydrolase | HC |
           chr3:50189946-50180682 | 20130731
          Length = 1003

 Score =  455 bits (1170), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 214/313 (68%), Positives = 251/313 (80%)

Query: 1   MHHRLSEPPQCELIYDLSAVLIHKGTAANSGHYIAHIKDENTGQWWEFDDEHVTNLGRHP 60
           M HRL E  Q +L+YDLSAVLIHKGT  NSGHYIAHIKD+NTGQWWEFDDEHVTNLG HP
Sbjct: 330 MQHRLPELSQFDLVYDLSAVLIHKGTGVNSGHYIAHIKDKNTGQWWEFDDEHVTNLGNHP 389

Query: 61  FGEEASCPTSKSVKTDVDNSNISEAMVTDNNGNGLSTTHXXXXXXXXXXXXDAYMLMYHL 120
           FGE +S  T+KS+  D  +S+ SEA + ++NGNG  TTH            DAYMLMYHL
Sbjct: 390 FGEGSSSSTTKSIAIDAIHSDCSEARIAESNGNGFHTTHSQSSLIETFSSCDAYMLMYHL 449

Query: 121 KRTKNVDEKGGMVCGANHRESDDGAVTAHENGCLPSHFSEEIQNFNASYVDACEQYSHRK 180
           + TK + E GG+VCGA+H+E +    TA ++  LPSH  +EI N NASY+DAC+QYSHRK
Sbjct: 450 RHTKGIKENGGIVCGASHKEIEGVVATAQDDASLPSHLYDEICNVNASYLDACQQYSHRK 509

Query: 181 ELEVSRINERKQEVRSVLAEAPVQPLEQPYFWISSDWLRQWAENIIPTAIDNTSLQCSHG 240
           ELE+SRI +R+ EVRS+LAEAPV PLE+P++WISSDWLRQWA+NIIPT+IDNTS+QCSHG
Sbjct: 510 ELELSRITDRRHEVRSILAEAPVPPLERPFYWISSDWLRQWADNIIPTSIDNTSIQCSHG 569

Query: 241 KVPVSKVASMKRLSSKAWDQLLSKYGGGPKLAHDDCCWDCLIDGAQNVVSADTYRDQRES 300
           KVPVSKV S+KRLS KAWD+L SKYGG P L+HDD C DCLI GAQ VVSADTYR +RES
Sbjct: 570 KVPVSKVPSIKRLSVKAWDKLFSKYGGIPTLSHDDHCRDCLICGAQTVVSADTYRGRRES 629

Query: 301 LKQLAREILDGNC 313
           LK LAR+ILDGNC
Sbjct: 630 LKSLARDILDGNC 642


>Medtr8g015660.1 | ubiquitin carboxyl-terminal hydrolase | HC |
           chr8:5156920-5167537 | 20130731
          Length = 554

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%), Gaps = 1/39 (2%)

Query: 14  IYDLSAVLIHKGTAANSGHYIAHIKDENTGQWWEFDDEH 52
           +YDL AVL HKG +A+SGHY+  +K EN G+W EFDD++
Sbjct: 484 VYDLVAVLTHKGRSADSGHYVGWVKQEN-GKWIEFDDDN 521