Miyakogusa Predicted Gene

Lj0g3v0241429.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0241429.1 Non Characterized Hit- tr|K4DB85|K4DB85_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,54.67,4e-16,seg,NULL,CUFF.15774.1
         (87 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g078525.1 | RING/U-box protein | HC | chr4:30333736-303399...   125   7e-30

>Medtr4g078525.1 | RING/U-box protein | HC |
          chr4:30333736-30339930 | 20130731
          Length = 578

 Score =  125 bits (315), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 59/87 (67%), Positives = 64/87 (73%)

Query: 1  MVCLGFDMVEVEAQRLELLLVKRWELRIXXXXXXXXXXXXXXXXXXXGLRPLRDRTNSWG 60
          MVCLGFDMVEVEAQRLEL LVKR E+ +                   GLRPLRD+T SWG
Sbjct: 1  MVCLGFDMVEVEAQRLELCLVKRKEVGLLLRTVFGLLVFLLFLSPVTGLRPLRDKTGSWG 60

Query: 61 DEWIFAGKDESDVGPFSQWNITGTYRG 87
          DEWIF+GKDESD+GPFSQWNITGTYRG
Sbjct: 61 DEWIFSGKDESDIGPFSQWNITGTYRG 87