Miyakogusa Predicted Gene

Lj0g3v0241419.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0241419.2 Non Characterized Hit- tr|G7KFX7|G7KFX7_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,68.97,0.0004,HYPOTHETICAL PROTEIN,NULL;
SYNOVIOLIN-RELATED,NULL,CUFF.15773.2
         (168 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g078525.1 | RING/U-box protein | HC | chr4:30333736-303399...   249   7e-67
Medtr5g077340.1 | hypothetical protein | LC | chr5:33021685-3301...    52   2e-07

>Medtr4g078525.1 | RING/U-box protein | HC | chr4:30333736-30339930
           | 20130731
          Length = 578

 Score =  249 bits (637), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 118/129 (91%), Positives = 124/129 (96%)

Query: 1   MVANSGKEGGLNQDGDYILSNPYHLLGVFSSQVFQESSRHKMWRRKHSPFHGMDKHCNVE 60
           MVANSGKEGGLNQDGDYILSNPYHLLGVFSSQVFQESSRH MWRRKHSP HGM+K+CNVE
Sbjct: 164 MVANSGKEGGLNQDGDYILSNPYHLLGVFSSQVFQESSRHTMWRRKHSPLHGMEKNCNVE 223

Query: 61  IAARVSRLSSSRHEGEHDSFQLEGLMESPSVDDDVDCFSPLQLNATSINIEVYYSKAVNY 120
           I+ARVSRLSSS+H+GEHDSFQLEGLMESPSVDDD DC SPLQLNATSINI VYY+KAVNY
Sbjct: 224 ISARVSRLSSSKHDGEHDSFQLEGLMESPSVDDDGDCISPLQLNATSINIGVYYNKAVNY 283

Query: 121 TLMVTFVSF 129
           TLMVTFVSF
Sbjct: 284 TLMVTFVSF 292


>Medtr5g077340.1 | hypothetical protein | LC |
          chr5:33021685-33019933 | 20130731
          Length = 77

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/29 (72%), Positives = 26/29 (89%)

Query: 48 SPFHGMDKHCNVEIAARVSRLSSSRHEGE 76
          +P HGM+K CNVEI+AR+SRLSSS+HEG 
Sbjct: 34 APLHGMEKICNVEISARISRLSSSKHEGR 62