Miyakogusa Predicted Gene

Lj0g3v0241139.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0241139.1 Non Characterized Hit- tr|I1PPH5|I1PPH5_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,45.28,4e-18,seg,NULL; LEUCINE-RICH REPEAT-CONTAINING
PROTEIN,NULL,gene.g18857.t1.1
         (113 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g038380.1 | plant intracellular ras-group-related LRR prot...   132   7e-32
Medtr4g127120.1 | plant intracellular ras-group-related LRR prot...   105   6e-24

>Medtr2g038380.1 | plant intracellular ras-group-related LRR protein
           | HC | chr2:16726984-16730514 | 20130731
          Length = 353

 Score =  132 bits (332), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 65/91 (71%), Positives = 74/91 (81%), Gaps = 5/91 (5%)

Query: 2   KLQKLSVEGNPLVSPPMEVVEQGLHVVKEFMCHKMNSEHKIPTKRSWIRKLVKLGTFNGY 61
           KLQKLSVEGNPL+SPP EVVEQGLHVVKE+MC+KMNS H IPTK+ W   +VK GTFNG 
Sbjct: 254 KLQKLSVEGNPLISPPQEVVEQGLHVVKEYMCNKMNSSHHIPTKKRWW--MVKCGTFNG- 310

Query: 62  ERRGKRSEHKGIDMLQYQPINGLATPGFLGK 92
               KRSEHKG   L YQP+NGLA+PGF+G+
Sbjct: 311 --EMKRSEHKGFHKLHYQPMNGLASPGFMGR 339


>Medtr4g127120.1 | plant intracellular ras-group-related LRR protein
           | HC | chr4:52730171-52726651 | 20130731
          Length = 343

 Score =  105 bits (263), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 71/92 (77%), Gaps = 4/92 (4%)

Query: 2   KLQKLSVEGNPLVSPPMEVVEQGLHVVKEFMCHKMNSEHKIPT-KRSWIRKLVKLGTFNG 60
           KLQKLSVEGNPL SPP EVVE+GLH+VKE++C+KMN+ H+ PT K+SW+ +LVK GTFN 
Sbjct: 238 KLQKLSVEGNPLTSPPPEVVERGLHIVKEYLCNKMNAGHQSPTKKKSWVGRLVKYGTFNV 297

Query: 61  YERRGKRSEHKGIDMLQY-QPINGLATPGFLG 91
             R G R EH+   + +Y + I+GLA+P  +G
Sbjct: 298 --RSGAREEHEAFILPEYNRSIDGLASPRHMG 327