Miyakogusa Predicted Gene
- Lj0g3v0240409.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0240409.2 Non Characterized Hit- tr|I3SXG7|I3SXG7_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,97.91,0,no
description,Nucleotide-binding, alpha-beta plait; RRM_1,RNA
recognition motif domain; SMALL NUCLE,CUFF.15734.2
(251 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr6g034835.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 352 3e-97
Medtr1g099190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 338 3e-93
Medtr1g099190.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 237 1e-62
Medtr1g099190.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 199 2e-51
Medtr3g091860.1 | RNA-binding protein with multiple splicing pro... 190 9e-49
Medtr3g091860.2 | RNA-binding protein with multiple splicing pro... 190 9e-49
Medtr3g091860.3 | RNA-binding protein with multiple splicing pro... 154 6e-38
Medtr3g104670.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 115 6e-26
Medtr3g104670.5 | RNA recognition motif, a.k.a. RRM, RBD protein... 94 1e-19
Medtr3g104670.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 7e-10
Medtr3g104670.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 7e-10
Medtr5g074430.2 | U1 small nuclear ribonucleoprotein | HC | chr5... 52 7e-07
Medtr5g074430.1 | U1 small nuclear ribonucleoprotein | HC | chr5... 52 7e-07
Medtr1g055405.1 | U2 small nuclear ribonucleoprotein B, putative... 50 2e-06
>Medtr6g034835.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:12131803-12138897 | 20130731
Length = 261
Score = 352 bits (902), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 180/249 (72%), Positives = 208/249 (83%), Gaps = 4/249 (1%)
Query: 1 MADGYWNRQQAHMPHSGMLKRPRSDYDMPASGLSSGNDINNYIVRDDDRTGPRMLRDTKT 60
MADGYWNRQQ+ +PHSG+ KRPR DY+MPASGL SGN+++ Y+ R++DR+G M++D+KT
Sbjct: 1 MADGYWNRQQSLLPHSGLHKRPRPDYEMPASGLPSGNEMH-YLSREEDRSGHPMVKDSKT 59
Query: 61 IGSAYDRYLQSGQLSAYTSGEASTIXXXXXXXXXXXXXXHSLADHAAM-GRHGGGGPDIA 119
IGSAYDRYLQ GQ+ ++TSGEAST+ HSL+D +AM GRHGGGGPD+A
Sbjct: 60 IGSAYDRYLQ-GQVPSFTSGEASTVGALGLQRGIGGLPNHSLSDPSAMIGRHGGGGPDLA 118
Query: 120 PNGRGFNYGGQPPVDSVSRPGHETVPLPPDASSTLYVEGLPSDSTKREVAHIFRPFVGYR 179
PNGRG NYG QPP+D VSR G E LPPDAS TLY+EGLPSD T+REVAHIFRPFVGYR
Sbjct: 119 PNGRGMNYGFQPPMDPVSRHGPEPALLPPDASPTLYIEGLPSDCTRREVAHIFRPFVGYR 178
Query: 180 EVRLVTKESKHRGGDPLILCFVDFENPACAATALSALQGYKVDELDPESGHLRLQFSRYP 239
EVRLV+KE+KHR GDPLILCFVDF NPACAATALSALQGYKVDE++PES HLRLQFSRYP
Sbjct: 179 EVRLVSKEAKHR-GDPLILCFVDFANPACAATALSALQGYKVDEINPESSHLRLQFSRYP 237
Query: 240 GPRSGPGFR 248
GPRSG G R
Sbjct: 238 GPRSGGGPR 246
>Medtr1g099190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:44752922-44747555 | 20130731
Length = 252
Score = 338 bits (867), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 175/255 (68%), Positives = 203/255 (79%), Gaps = 7/255 (2%)
Query: 1 MADGYWNRQQAHMPH-SGMLKRPRSDYDMPASGLSSGNDINNYIVRDDDRTGPRMLRDTK 59
MADG+WNRQQ H+P GMLKRPR++YD SG++SGN+++NYI +++ G +ML DTK
Sbjct: 1 MADGFWNRQQQHLPPPGGMLKRPRTEYDTAPSGVTSGNEVHNYIAQNN---GHQMLNDTK 57
Query: 60 TIGSAYDRYLQSGQLSAYTSGEASTIXXXXXXXXXXXXXXHSLADHAAMGRHGG--GGPD 117
+GSAYDR+LQS L+++ SGEAS I HSL D +AMG G GGPD
Sbjct: 58 ILGSAYDRFLQSAGLTSFNSGEASVIGGVGFARGVGELPGHSLGDPSAMGHLSGVGGGPD 117
Query: 118 IAPNGRGFNYGGQPPVDSVSRPGHETVPLPPDASSTLYVEGLPSDSTKREVAHIFRPFVG 177
++ NGR N+GGQ P+D+VSRPG ET+PLP DASSTLYVEGLPSDSTKREVAHIFRPFVG
Sbjct: 118 LSRNGRDVNFGGQLPIDAVSRPGPETIPLPRDASSTLYVEGLPSDSTKREVAHIFRPFVG 177
Query: 178 YREVRLVTKESKHRGGDPLILCFVDFENPACAATALSALQGYKVDELDPESGHLRLQFSR 237
YREVRLV KESKHRGGDPLILCFVDF NPACAATALSALQGYKVDE++PES +LRLQFSR
Sbjct: 178 YREVRLVAKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDEINPESSYLRLQFSR 237
Query: 238 YPGPRS-GPGFRGKR 251
PG RS GPG RGKR
Sbjct: 238 SPGRRSGGPGPRGKR 252
>Medtr1g099190.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:44752913-44747593 | 20130731
Length = 195
Score = 237 bits (604), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 122/193 (63%), Positives = 147/193 (76%), Gaps = 6/193 (3%)
Query: 1 MADGYWNRQQAHMPH-SGMLKRPRSDYDMPASGLSSGNDINNYIVRDDDRTGPRMLRDTK 59
MADG+WNRQQ H+P GMLKRPR++YD SG++SGN+++NYI +++ G +ML DTK
Sbjct: 1 MADGFWNRQQQHLPPPGGMLKRPRTEYDTAPSGVTSGNEVHNYIAQNN---GHQMLNDTK 57
Query: 60 TIGSAYDRYLQSGQLSAYTSGEASTIXXXXXXXXXXXXXXHSLADHAAMGRHGG--GGPD 117
+GSAYDR+LQS L+++ SGEAS I HSL D +AMG G GGPD
Sbjct: 58 ILGSAYDRFLQSAGLTSFNSGEASVIGGVGFARGVGELPGHSLGDPSAMGHLSGVGGGPD 117
Query: 118 IAPNGRGFNYGGQPPVDSVSRPGHETVPLPPDASSTLYVEGLPSDSTKREVAHIFRPFVG 177
++ NGR N+GGQ P+D+VSRPG ET+PLP DASSTLYVEGLPSDSTKREVAHIFRPFVG
Sbjct: 118 LSRNGRDVNFGGQLPIDAVSRPGPETIPLPRDASSTLYVEGLPSDSTKREVAHIFRPFVG 177
Query: 178 YREVRLVTKESKH 190
YREVRLV KESKH
Sbjct: 178 YREVRLVAKESKH 190
>Medtr1g099190.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:44752913-44747576 | 20130731
Length = 180
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/178 (58%), Positives = 130/178 (73%), Gaps = 6/178 (3%)
Query: 1 MADGYWNRQQAHMPH-SGMLKRPRSDYDMPASGLSSGNDINNYIVRDDDRTGPRMLRDTK 59
MADG+WNRQQ H+P GMLKRPR++YD SG++SGN+++NYI +++ G +ML DTK
Sbjct: 1 MADGFWNRQQQHLPPPGGMLKRPRTEYDTAPSGVTSGNEVHNYIAQNN---GHQMLNDTK 57
Query: 60 TIGSAYDRYLQSGQLSAYTSGEASTIXXXXXXXXXXXXXXHSLADHAAMGRHGG--GGPD 117
+GSAYDR+LQS L+++ SGEAS I HSL D +AMG G GGPD
Sbjct: 58 ILGSAYDRFLQSAGLTSFNSGEASVIGGVGFARGVGELPGHSLGDPSAMGHLSGVGGGPD 117
Query: 118 IAPNGRGFNYGGQPPVDSVSRPGHETVPLPPDASSTLYVEGLPSDSTKREVAHIFRPF 175
++ NGR N+GGQ P+D+VSRPG ET+PLP DASSTLYVEGLPSDSTKREVA IF F
Sbjct: 118 LSRNGRDVNFGGQLPIDAVSRPGPETIPLPRDASSTLYVEGLPSDSTKREVARIFFIF 175
>Medtr3g091860.1 | RNA-binding protein with multiple splicing
protein | HC | chr3:41912150-41919016 | 20130731
Length = 228
Score = 190 bits (483), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 119/253 (47%), Positives = 158/253 (62%), Gaps = 27/253 (10%)
Query: 1 MADGYWN--RQQAHMPHSGMLKRPRSDYDMPASGLSSGNDINNYIVRDDDRTGPRMLRDT 58
M+D YW Q H P + KRPR++YD +S +++ NY DDDR +++RDT
Sbjct: 1 MSDAYWRYAESQQHAPPTIPGKRPRTEYD-----VSGVHNLANYFPHDDDRGRLQVIRDT 55
Query: 59 KTIGSAYDRYLQSGQLSAYTSGEASTIXXXXXXXXXXXXXXHSLADHAAMGRHGGGGPDI 118
+++ ++Y+RYL++ +S++ SG+++ HS+ D GG D
Sbjct: 56 ESLDASYERYLRNA-ISSHGSGQSTRTIDGGVPS-------HSIDDSHVTSM---GGVD- 103
Query: 119 APNGRGFNYGGQPPVDSVSRPGHETVPLPPDASSTLYVEGLPSDSTKREVAHIFRPFVGY 178
R N Q S RP H LPP A++TL+VEGLPS+ T+REVAHIFRPFVGY
Sbjct: 104 ----RRTNVKDQILELSGGRPDHS---LPPGATNTLFVEGLPSNCTRREVAHIFRPFVGY 156
Query: 179 REVRLVTKESKHRGGDPLILCFVDFENPACAATALSALQGYKVDELDPESGHLRLQFSRY 238
+EVRLV+KES+ GGDPL+LCFVDF +PA AATA+ AL GYK DELD S +LR QF+R
Sbjct: 157 KEVRLVSKESRQPGGDPLLLCFVDFVSPAHAATAMDALHGYKFDELDRNSVNLRFQFARN 216
Query: 239 PGPRSGPGFRGKR 251
PG RSG G RGKR
Sbjct: 217 PG-RSGGGHRGKR 228
>Medtr3g091860.2 | RNA-binding protein with multiple splicing
protein | HC | chr3:41912150-41919016 | 20130731
Length = 228
Score = 190 bits (483), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 119/253 (47%), Positives = 158/253 (62%), Gaps = 27/253 (10%)
Query: 1 MADGYWN--RQQAHMPHSGMLKRPRSDYDMPASGLSSGNDINNYIVRDDDRTGPRMLRDT 58
M+D YW Q H P + KRPR++YD +S +++ NY DDDR +++RDT
Sbjct: 1 MSDAYWRYAESQQHAPPTIPGKRPRTEYD-----VSGVHNLANYFPHDDDRGRLQVIRDT 55
Query: 59 KTIGSAYDRYLQSGQLSAYTSGEASTIXXXXXXXXXXXXXXHSLADHAAMGRHGGGGPDI 118
+++ ++Y+RYL++ +S++ SG+++ HS+ D GG D
Sbjct: 56 ESLDASYERYLRNA-ISSHGSGQSTRTIDGGVPS-------HSIDDSHVTSM---GGVD- 103
Query: 119 APNGRGFNYGGQPPVDSVSRPGHETVPLPPDASSTLYVEGLPSDSTKREVAHIFRPFVGY 178
R N Q S RP H LPP A++TL+VEGLPS+ T+REVAHIFRPFVGY
Sbjct: 104 ----RRTNVKDQILELSGGRPDHS---LPPGATNTLFVEGLPSNCTRREVAHIFRPFVGY 156
Query: 179 REVRLVTKESKHRGGDPLILCFVDFENPACAATALSALQGYKVDELDPESGHLRLQFSRY 238
+EVRLV+KES+ GGDPL+LCFVDF +PA AATA+ AL GYK DELD S +LR QF+R
Sbjct: 157 KEVRLVSKESRQPGGDPLLLCFVDFVSPAHAATAMDALHGYKFDELDRNSVNLRFQFARN 216
Query: 239 PGPRSGPGFRGKR 251
PG RSG G RGKR
Sbjct: 217 PG-RSGGGHRGKR 228
>Medtr3g091860.3 | RNA-binding protein with multiple splicing
protein | HC | chr3:41912150-41918988 | 20130731
Length = 243
Score = 154 bits (390), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 134/220 (60%), Gaps = 26/220 (11%)
Query: 1 MADGYWN--RQQAHMPHSGMLKRPRSDYDMPASGLSSGNDINNYIVRDDDRTGPRMLRDT 58
M+D YW Q H P + KRPR++YD +S +++ NY DDDR +++RDT
Sbjct: 1 MSDAYWRYAESQQHAPPTIPGKRPRTEYD-----VSGVHNLANYFPHDDDRGRLQVIRDT 55
Query: 59 KTIGSAYDRYLQSGQLSAYTSGEASTIXXXXXXXXXXXXXXHSLADHAAMGRHGGGGPDI 118
+++ ++Y+RYL++ +S++ SG+++ HS+ D GG D
Sbjct: 56 ESLDASYERYLRNA-ISSHGSGQST-------RTIDGGVPSHSIDDSHVTSM---GGVD- 103
Query: 119 APNGRGFNYGGQPPVDSVSRPGHETVPLPPDASSTLYVEGLPSDSTKREVAHIFRPFVGY 178
R N Q S RP H LPP A++TL+VEGLPS+ T+REVAHIFRPFVGY
Sbjct: 104 ----RRTNVKDQILELSGGRPDHS---LPPGATNTLFVEGLPSNCTRREVAHIFRPFVGY 156
Query: 179 REVRLVTKESKHRGGDPLILCFVDFENPACAATALSALQG 218
+EVRLV+KES+ GGDPL+LCFVDF +PA AATA+ AL G
Sbjct: 157 KEVRLVSKESRQPGGDPLLLCFVDFVSPAHAATAMDALHG 196
>Medtr3g104670.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:48246099-48241678 | 20130731
Length = 229
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 74/105 (70%)
Query: 135 SVSRPGHETVPLPPDASSTLYVEGLPSDSTKREVAHIFRPFVGYREVRLVTKESKHRGGD 194
S+S+ ++ +P+ S+ L+V GLP D T+REV H+FRPF+GY+++++V KE + G
Sbjct: 116 SISKSNYDALPVSAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDK 175
Query: 195 PLILCFVDFENPACAATALSALQGYKVDELDPESGHLRLQFSRYP 239
+I CFV+F P CA TA+ ALQGYK D+ P+S L+++F+ +P
Sbjct: 176 AMIFCFVEFTEPKCALTAMEALQGYKFDDKKPDSPTLKIKFAHFP 220
>Medtr3g104670.5 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:48246099-48244267 | 20130731
Length = 215
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 59/86 (68%)
Query: 135 SVSRPGHETVPLPPDASSTLYVEGLPSDSTKREVAHIFRPFVGYREVRLVTKESKHRGGD 194
S+S+ ++ +P+ S+ L+V GLP D T+REV H+FRPF+GY+++++V KE + G
Sbjct: 116 SISKSNYDALPVSAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDK 175
Query: 195 PLILCFVDFENPACAATALSALQGYK 220
+I CFV+F P CA TA+ ALQ K
Sbjct: 176 AMIFCFVEFTEPKCALTAMEALQVSK 201
>Medtr3g104670.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:48246099-48244805 | 20130731
Length = 178
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 40/53 (75%)
Query: 135 SVSRPGHETVPLPPDASSTLYVEGLPSDSTKREVAHIFRPFVGYREVRLVTKE 187
S+S+ ++ +P+ S+ L+V GLP D T+REV H+FRPF+GY+++++V KE
Sbjct: 116 SISKSNYDALPVSAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKVVHKE 168
>Medtr3g104670.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:48246099-48244805 | 20130731
Length = 178
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 40/53 (75%)
Query: 135 SVSRPGHETVPLPPDASSTLYVEGLPSDSTKREVAHIFRPFVGYREVRLVTKE 187
S+S+ ++ +P+ S+ L+V GLP D T+REV H+FRPF+GY+++++V KE
Sbjct: 116 SISKSNYDALPVSAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKVVHKE 168
>Medtr5g074430.2 | U1 small nuclear ribonucleoprotein | HC |
chr5:31637698-31631271 | 20130731
Length = 234
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 8/76 (10%)
Query: 151 SSTLYVEGLPSDSTKREVAHIFRPFVGYREVRLVTKESKHRGGDPLILCFVDFENPACAA 210
++ L++E LP ++T R + +F + G++EVRL+ E+K + FVDFE+ ++
Sbjct: 159 NNILFIENLPYETTGRMLEMLFEQYPGFKEVRLI--EAKPG------IAFVDFEDDGQSS 210
Query: 211 TALSALQGYKVDELDP 226
A+ ALQG+K+ +P
Sbjct: 211 MAMQALQGFKITPQNP 226
>Medtr5g074430.1 | U1 small nuclear ribonucleoprotein | HC |
chr5:31637698-31631234 | 20130731
Length = 233
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 8/76 (10%)
Query: 151 SSTLYVEGLPSDSTKREVAHIFRPFVGYREVRLVTKESKHRGGDPLILCFVDFENPACAA 210
++ L++E LP ++T R + +F + G++EVRL+ E+K + FVDFE+ ++
Sbjct: 158 NNILFIENLPYETTGRMLEMLFEQYPGFKEVRLI--EAKPG------IAFVDFEDDGQSS 209
Query: 211 TALSALQGYKVDELDP 226
A+ ALQG+K+ +P
Sbjct: 210 MAMQALQGFKITPQNP 225
>Medtr1g055405.1 | U2 small nuclear ribonucleoprotein B, putative |
LC | chr1:24534556-24533368 | 20130731
Length = 279
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 8/76 (10%)
Query: 151 SSTLYVEGLPSDSTKREVAHIFRPFVGYREVRLVTKESKHRGGDPLILCFVDFENPACAA 210
++ L++E LP ++T R + +F + G++EVRL+ E+K + FVDFE+ ++
Sbjct: 204 NNILFIENLPYETTGRMLEMLFEQYPGFKEVRLI--EAKPG------IAFVDFEDEGQSS 255
Query: 211 TALSALQGYKVDELDP 226
A+ ALQG+K+ +P
Sbjct: 256 MAMQALQGFKITPQNP 271