Miyakogusa Predicted Gene

Lj0g3v0239439.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0239439.1 Non Characterized Hit- tr|C5YV75|C5YV75_SORBI
Putative uncharacterized protein Sb09g008006
(Fragment,72,0.0000000000001,seg,NULL,
NODE_49605_length_322_cov_609.214294.path1.1
         (97 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g101140.2 | NADH dehydrogenase [ubiquinone] 1 beta subcomp...   144   2e-35
Medtr4g101140.1 | NADH dehydrogenase [ubiquinone] 1 beta subcomp...   143   4e-35

>Medtr4g101140.2 | NADH dehydrogenase [ubiquinone] 1 beta
          subcomplex subunit 8 | HC | chr4:41768568-41770219 |
          20130731
          Length = 117

 Score =  144 bits (362), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 71/97 (73%), Positives = 75/97 (77%)

Query: 1  MAGRLTNSASRILGGNGXXXXXXXXXXXXXXGIGPPVGKHIVPDKPLPANDELVWDNGTS 60
          MAGRLTN AS+ILGGNG              G+G PVGKH VP+KPLP N+EL WDNGT 
Sbjct: 1  MAGRLTNVASQILGGNGVVHRSVASSLRLRSGMGLPVGKHYVPNKPLPMNEELTWDNGTP 60

Query: 61 LPEPCIDRIADTVGKYEALAWLCGGLSCFASLGLLAV 97
           PEPCIDRIADTVGKYEALAWLCGGLSCFA LGLLAV
Sbjct: 61 FPEPCIDRIADTVGKYEALAWLCGGLSCFAGLGLLAV 97


>Medtr4g101140.1 | NADH dehydrogenase [ubiquinone] 1 beta
          subcomplex subunit 8 | HC | chr4:41768568-41773066 |
          20130731
          Length = 125

 Score =  143 bits (360), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/97 (73%), Positives = 75/97 (77%)

Query: 1  MAGRLTNSASRILGGNGXXXXXXXXXXXXXXGIGPPVGKHIVPDKPLPANDELVWDNGTS 60
          MAGRLTN AS+ILGGNG              G+G PVGKH VP+KPLP N+EL WDNGT 
Sbjct: 1  MAGRLTNVASQILGGNGVVHRSVASSLRLRSGMGLPVGKHYVPNKPLPMNEELTWDNGTP 60

Query: 61 LPEPCIDRIADTVGKYEALAWLCGGLSCFASLGLLAV 97
           PEPCIDRIADTVGKYEALAWLCGGLSCFA LGLLAV
Sbjct: 61 FPEPCIDRIADTVGKYEALAWLCGGLSCFAGLGLLAV 97