Miyakogusa Predicted Gene

Lj0g3v0238949.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0238949.1 Non Characterized Hit- tr|G5A448|G5A448_PHYSP
Putative uncharacterized protein OS=Phytophthora sojae,23.45,2e-18,no
description,Armadillo-like helical; seg,NULL; ARM
repeat,Armadillo-type fold; SUBFAMILY NOT NAMED,CUFF.15695.1
         (503 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g108470.1 | DDB1- and CUL4-associated factor-like protein ...   753   0.0  

>Medtr3g108470.1 | DDB1- and CUL4-associated factor-like protein | HC
            | chr3:50133071-50123613 | 20130731
          Length = 1929

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/504 (76%), Positives = 409/504 (81%), Gaps = 14/504 (2%)

Query: 1    MERVCALPSDVVYHVVELALQLLECNQDQARENXXXXXXXXXXXXXXXXXXDSQDGLQKL 60
            MERVCALPSDV+YHVVELALQL+ECNQD AR+N                  DSQDGLQKL
Sbjct: 655  MERVCALPSDVIYHVVELALQLIECNQDLARKNAALFFAAAFVFRAVLDAFDSQDGLQKL 714

Query: 61   LGLLNDVASVRSGVTXXXXXXXXXXXXRNDR-SSAEALTSSEKVVAYEACVALRKYFRAH 119
            LGLLND AS+RSGVT            RNDR SSAE LTSSEK VAY  CVALR+YFRAH
Sbjct: 715  LGLLNDAASIRSGVTSGALGSSNSGSLRNDRTSSAEVLTSSEKQVAYHTCVALRQYFRAH 774

Query: 120  LLLLVDSIRPNKSNRSAARNVPSIRAAYKPLLISNEAIDAVFQQLQKDRKLGPAFVRTYW 179
            LL+L+DSIRPNKSNRS+ARN+PS RAAYKPL ISNEA+DAVF QLQKDRKLGPAFVRT W
Sbjct: 775  LLVLIDSIRPNKSNRSSARNIPSTRAAYKPLDISNEAMDAVFLQLQKDRKLGPAFVRTGW 834

Query: 180  PAVEKFVSYNGHITMLELCQAPPQERYLHDLVQYALGILHIVTLVPSSRKMIVNTTLSNN 239
              VEKF++ NGHITMLELCQAPP ERYLHDL+QYALG+L IVTLVPSSRKMIVN TLS N
Sbjct: 835  REVEKFLASNGHITMLELCQAPPVERYLHDLLQYALGVLQIVTLVPSSRKMIVNATLSTN 894

Query: 240  RAGIAVILDAANIASSHVDPEIIQPALNVLVNLVCPPPSISNKQSAVMQGQQFVSSQTSN 299
            RAGI+VILDAANIASSHVDPEIIQPALNVLVNLVCPPPSISNK  AV QGQQF SSQ SN
Sbjct: 895  RAGISVILDAANIASSHVDPEIIQPALNVLVNLVCPPPSISNKPPAVSQGQQFPSSQASN 954

Query: 300  GPPSETRDRNAERNTVTVDRAVHVTSQIDPRERNGESSAIDRSSAAALSAQSVNNTPQTP 359
            G   ETRDRNAERN              DPRERNGESSA+DR +AAAL+ QSVN TPQTP
Sbjct: 955  G-ALETRDRNAERNIT------------DPRERNGESSAVDRGTAAALTTQSVNTTPQTP 1001

Query: 360  GPAASSGLVGDRRIXXXXXXXXXXXXXQLEQAYRQAREAVRSNNGIKVLLHLLQPRIYSS 419
             P+ASSGLVGDRRI             QLEQ Y QAREAVR+NNGIKVLLHLLQPRIYS 
Sbjct: 1002 VPSASSGLVGDRRISLGAGARCAGLATQLEQGYHQAREAVRNNNGIKVLLHLLQPRIYSP 1061

Query: 420  PASLDCLRALACRVLLGLARDDTIAHILTKLQVGKKLSELIRDSGSPTLGNEQGRWQAEL 479
            PA+LDCLRALACRVLLGLARDDTIAHILTKLQVGK+LSELIRDSGS TLG EQGRWQAEL
Sbjct: 1062 PAALDCLRALACRVLLGLARDDTIAHILTKLQVGKRLSELIRDSGSTTLGTEQGRWQAEL 1121

Query: 480  SQAAIELIGIVTNLGCASTLAATD 503
            SQAAIELIGIV NLG ASTL A+D
Sbjct: 1122 SQAAIELIGIVANLGRASTLVASD 1145