Miyakogusa Predicted Gene
- Lj0g3v0238669.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0238669.1 Non Characterized Hit- tr|I1JDA2|I1JDA2_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,31.66,2e-18,RNA-binding domain, RBD,NULL; RRM,RNA recognition
motif domain; coiled-coil,NULL; seg,NULL; no descr,CUFF.15707.1
(359 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 564 e-161
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 543 e-154
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 535 e-152
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 439 e-123
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 439 e-123
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 416 e-116
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 341 6e-94
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 316 3e-86
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 291 5e-79
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 128 1e-29
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 103 2e-22
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 102 4e-22
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 102 4e-22
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 102 4e-22
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 102 7e-22
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 100 2e-21
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 99 7e-21
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 93 3e-19
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 92 6e-19
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 92 8e-19
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 87 2e-17
Medtr1723s0010.1 | RNA recognition motif, a.k.a. RRM, RBD protei... 84 3e-16
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 82 9e-16
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 81 1e-15
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 81 1e-15
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 81 1e-15
Medtr1889s0010.1 | RNA recognition motif, a.k.a. RRM, RBD protei... 81 2e-15
Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC | ch... 77 2e-14
Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC | ch... 77 2e-14
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 75 7e-14
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 75 1e-13
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 75 1e-13
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 74 2e-13
Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC | ch... 74 2e-13
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 74 3e-13
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 74 3e-13
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 74 3e-13
Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 73 3e-13
Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 73 3e-13
Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 73 3e-13
Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 73 3e-13
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 73 5e-13
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 72 6e-13
Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 72 7e-13
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 2e-12
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 2e-12
Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |... 70 3e-12
Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |... 70 3e-12
Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |... 70 3e-12
Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |... 70 3e-12
Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |... 70 4e-12
Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |... 69 5e-12
Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |... 69 8e-12
Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC | ch... 69 8e-12
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 68 1e-11
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 67 4e-11
Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC | ch... 65 9e-11
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 64 2e-10
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 64 2e-10
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 64 2e-10
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 63 5e-10
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 63 5e-10
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 63 5e-10
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 2e-09
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 2e-09
Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 3e-09
Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 3e-09
Medtr2g070540.1 | CTC-interacting domain protein | HC | chr2:297... 60 4e-09
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 7e-09
Medtr3g092550.1 | CTC-interacting domain protein | HC | chr3:422... 59 8e-09
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 8e-09
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 9e-09
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-08
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 2e-08
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 2e-08
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 2e-08
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 2e-08
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 3e-08
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 3e-08
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 3e-08
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 4e-08
Medtr3g092510.1 | CTC-interacting domain protein | HC | chr3:422... 55 8e-08
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 8e-08
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 8e-08
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 8e-08
Medtr7g096260.2 | multiple RNA-binding domain protein | HC | chr... 55 1e-07
Medtr4g068120.2 | flowering time control FPA-like protein | HC |... 55 1e-07
Medtr4g068120.1 | flowering time control FPA-like protein | HC |... 55 1e-07
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 1e-07
Medtr8g031560.1 | eukaryotic translation initiation factor 3 sub... 55 1e-07
Medtr7g096260.1 | multiple RNA-binding domain protein | HC | chr... 55 1e-07
Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-07
Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-07
Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-07
Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-07
Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr7g094670.1 | mRNA capping enzyme, putative | LC | chr7:3777... 54 2e-07
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 2e-07
Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 2e-07
Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 3e-07
Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 3e-07
Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 3e-07
Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 3e-07
Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 3e-07
Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 3e-07
Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 3e-07
Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 3e-07
Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 3e-07
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 4e-07
Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like pro... 53 4e-07
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 7e-07
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 7e-07
Medtr8g032590.6 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 9e-07
Medtr8g032590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 9e-07
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-06
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-06
Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-06
Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-06
Medtr4g117350.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-06
Medtr8g107310.1 | eukaryotic translation initiation factor 3 sub... 51 1e-06
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr1g101520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr1g054675.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 2e-06
Medtr3g086380.1 | RNA recognition motif 1 in terminal EAR1-like ... 50 2e-06
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 3e-06
Medtr3g448370.5 | RNA recognition motif 2 in plant MEI2-like pro... 50 3e-06
Medtr3g448370.2 | RNA recognition motif 2 in plant MEI2-like pro... 50 3e-06
Medtr3g448370.3 | RNA recognition motif 2 in plant MEI2-like pro... 50 3e-06
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 3e-06
Medtr3g448370.1 | RNA recognition motif 2 in plant MEI2-like pro... 50 3e-06
Medtr3g448370.4 | RNA recognition motif 2 in plant MEI2-like pro... 50 3e-06
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 3e-06
Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 3e-06
Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 3e-06
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 4e-06
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 4e-06
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 4e-06
Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 8e-06
Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 8e-06
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 564 bits (1454), Expect = e-161, Method: Compositional matrix adjust.
Identities = 283/363 (77%), Positives = 308/363 (84%), Gaps = 5/363 (1%)
Query: 1 MAQIHETD----AVAQEANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLA 56
MAQ HE A A NQ TSLYVGDLD ++ DSQLYDLFNQIGQVVSVR+CRDLA
Sbjct: 1 MAQNHENVNNDVAAAPVPNQLTTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLA 60
Query: 57 TQQSLGYGYVNFTNPKDAATALDVLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLD 116
+QQSLGYGYVNF+NP DAA A+DVLNFTPLN KPIRIMYSHRDPSVRKSGAANIF+KNLD
Sbjct: 61 SQQSLGYGYVNFSNPHDAAKAMDVLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLD 120
Query: 117 KSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDK 176
++IDHKALYDTF +FGNIL+CKIA D SG SKGYGFVQFENEESAQ+AID NG L+ DK
Sbjct: 121 RAIDHKALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDK 180
Query: 177 EVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD 236
VYV HFQRKQDR+N AL KFNNVYVKNLSE++TDDDLK F EYGTITSAVVMRDVD
Sbjct: 181 PVYVGHFQRKQDRDN-ALSNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVD 239
Query: 237 GKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQET 296
GKSKCFGFVNFENAD AA+AV+ALNGKKFDDKEWYVG +HEQSM+ET
Sbjct: 240 GKSKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQSMKET 299
Query: 297 VDKYQGANLYLKNLDDNVDDEKLRELFSEFGTITSCKIMRDPHGVSRGSGFVAFSTPEEA 356
VDK+ GANLYLKNLDD+V DEKL ELFSEFGT+TSCKI+RDP G+SRGSGFVAFSTPEEA
Sbjct: 300 VDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEA 359
Query: 357 TRA 359
TRA
Sbjct: 360 TRA 362
Score = 152 bits (383), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 97/267 (36%), Positives = 152/267 (56%), Gaps = 16/267 (5%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
+++ +LD I+ LYD F+ G ++S ++ D A+ S GYG+V F N + A +A+D L
Sbjct: 114 IFIKNLDRAIDHKALYDTFSIFGNILSCKIAMD-ASGLSKGYGFVQFENEESAQSAIDKL 172
Query: 82 NFTPLNGKPIRIMY----SHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTC 137
N LN KP+ + + RD ++ + N++VKNL +S+ L +TF +G I +
Sbjct: 173 NGMLLNDKPVYVGHFQRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSA 232
Query: 138 KIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRE------- 190
+ D G+SK +GFV FEN ++A A++ NGK DKE YV +K +RE
Sbjct: 233 VVMRDVDGKSKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVGKALKKYERELELKERH 292
Query: 191 --NAALGGGKF--NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVN 246
+ KF N+Y+KNL +++TD+ L ++FSE+GT+TS ++RD G S+ GFV
Sbjct: 293 EQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVA 352
Query: 247 FENADEAAKAVDALNGKKFDDKEWYVG 273
F +EA +A+ +NGK K YV
Sbjct: 353 FSTPEEATRALAEMNGKMVAGKPLYVA 379
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 96/185 (51%), Gaps = 17/185 (9%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
+YV +L + D L + F + G + S V RD+ +S +G+VNF N AA A++ L
Sbjct: 205 VYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDV-DGKSKCFGFVNFENADAAAEAVEAL 263
Query: 82 NFTPLN------GKPIR-------IMYSHRDP---SVRKSGAANIFVKNLDKSIDHKALY 125
N + GK ++ + H +V K AN+++KNLD S+ + L
Sbjct: 264 NGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLS 323
Query: 126 DTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQR 185
+ F FG + +CKI D G S+G GFV F E A A+ NGK++ K +YV+ Q+
Sbjct: 324 ELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPAQK 383
Query: 186 KQDRE 190
K++R+
Sbjct: 384 KEERK 388
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 543 bits (1398), Expect = e-154, Method: Compositional matrix adjust.
Identities = 268/372 (72%), Positives = 306/372 (82%), Gaps = 14/372 (3%)
Query: 1 MAQI---HETDA---------VAQEANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVS 48
MAQI H+T A V ANQ + TSLYVGDL+ +NDSQLYDLFNQ+GQVVS
Sbjct: 1 MAQIQVQHQTPAPVPAPSNGVVPNVANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVS 60
Query: 49 VRVCRDLATQQSLGYGYVNFTNPKDAATALDVLNFTPLNGKPIRIMYSHRDPSVRKSGAA 108
VRVCRDLAT++SLGYGYVNFTNP+DAA ALDVLNFTP+N K IR+MYSHRDPS RKSG A
Sbjct: 61 VRVCRDLATRRSLGYGYVNFTNPQDAARALDVLNFTPMNNKSIRVMYSHRDPSSRKSGTA 120
Query: 109 NIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNF 168
NIF+KNLDK+IDHKAL+DTF FG I++CKIATDGSGQSKGYGFVQFE E+SAQNAID
Sbjct: 121 NIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKL 180
Query: 169 NGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITS 228
NG LI DK+V+V HF RKQDR+N L KFNNVYVKNLSE+ T+DDLK F YGTITS
Sbjct: 181 NGMLINDKQVFVGHFLRKQDRDN-VLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITS 239
Query: 229 AVVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYVGXXXXXXXXXXXXXXQ 288
AV+MRD DG+SKCFGFVNFENA++AAKAV+ALNGKK DDKEWYVG +
Sbjct: 240 AVLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDKEWYVGKAQKKSEREQELKGR 299
Query: 289 HEQSMQET-VDKYQGANLYLKNLDDNVDDEKLRELFSEFGTITSCKIMRDPHGVSRGSGF 347
EQ+++E+ VDK+QG NLYLKNLDD++ DEKL+E+FSEFGTITS KIMRDP+GVSRGSGF
Sbjct: 300 FEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPNGVSRGSGF 359
Query: 348 VAFSTPEEATRA 359
VAFSTPEEA+RA
Sbjct: 360 VAFSTPEEASRA 371
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/268 (37%), Positives = 151/268 (56%), Gaps = 17/268 (6%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
+++ +LD I+ L+D F+ GQ++S ++ D + QS GYG+V F A A+D L
Sbjct: 122 IFIKNLDKTIDHKALHDTFSSFGQIMSCKIATD-GSGQSKGYGFVQFEAEDSAQNAIDKL 180
Query: 82 NFTPLNGKPIRIMY----SHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTC 137
N +N K + + + RD + K+ N++VKNL +S L + F +G I +
Sbjct: 181 NGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSA 240
Query: 138 KIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGG- 196
+ D G+SK +GFV FEN E A A++ NGK + DKE YV Q+K +RE G
Sbjct: 241 VLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDKEWYVGKAQKKSEREQELKGRF 300
Query: 197 ---------GKFN--NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFV 245
KF N+Y+KNL +++TD+ LK++FSE+GTITS +MRD +G S+ GFV
Sbjct: 301 EQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPNGVSRGSGFV 360
Query: 246 NFENADEAAKAVDALNGKKFDDKEWYVG 273
F +EA++A+ +NGK K YV
Sbjct: 361 AFSTPEEASRALGEMNGKMIVSKPLYVA 388
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 93/186 (50%), Gaps = 18/186 (9%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
+YV +L + L + F G + S + RD A +S +G+VNF N +DAA A++ L
Sbjct: 213 VYVKNLSESFTEDDLKNEFGAYGTITSAVLMRD-ADGRSKCFGFVNFENAEDAAKAVEAL 271
Query: 82 NFTPLNGKPI-----------------RIMYSHRDPSVRKSGAANIFVKNLDKSIDHKAL 124
N ++ K R + ++ V K N+++KNLD SI + L
Sbjct: 272 NGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKL 331
Query: 125 YDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQ 184
+ F FG I + KI D +G S+G GFV F E A A+ NGK+I K +YV+ Q
Sbjct: 332 KEMFSEFGTITSYKIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQ 391
Query: 185 RKQDRE 190
RK+DR
Sbjct: 392 RKEDRR 397
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 535 bits (1378), Expect = e-152, Method: Compositional matrix adjust.
Identities = 250/340 (73%), Positives = 289/340 (85%), Gaps = 1/340 (0%)
Query: 20 TSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
TSLYVGDLD + DSQLYDLFNQ+GQVVSVRVCRDL T++SLGYGYVN++NP+DAA ALD
Sbjct: 34 TSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALD 93
Query: 80 VLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKI 139
VLNFTPLN +PIRIMYSHRDPS+RKSG NIF+KNLDK+IDHKAL+DTF FGNIL+CK+
Sbjct: 94 VLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFGNILSCKV 153
Query: 140 ATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKF 199
A DGSGQSKGYGFVQF+ EE+AQ AI+ NG L+ DK+VYV F RKQ+RE+ KF
Sbjct: 154 AVDGSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTG-DRAKF 212
Query: 200 NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDA 259
NNV+VKNLSE+ TDD+LKK F E+GTITSAVVMRD DGKSKCFGFVNFE+ D+AA+AV+A
Sbjct: 213 NNVFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGDGKSKCFGFVNFESTDDAARAVEA 272
Query: 260 LNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKL 319
LNGKK DDKEWYVG + EQSM+E DKYQGANLY+KNLDD++ DEKL
Sbjct: 273 LNGKKIDDKEWYVGKAQKKSEREHELKIKFEQSMKEAADKYQGANLYVKNLDDSIADEKL 332
Query: 320 RELFSEFGTITSCKIMRDPHGVSRGSGFVAFSTPEEATRA 359
+ELFS +GTITSCK+MRDP+GVSRGSGFVAFSTPEEA+RA
Sbjct: 333 KELFSSYGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRA 372
Score = 165 bits (418), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 100/266 (37%), Positives = 149/266 (56%), Gaps = 16/266 (6%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
+++ +LD I+ L+D F+ G ++S +V D + QS GYG+V F + A A++ L
Sbjct: 124 IFIKNLDKAIDHKALHDTFSSFGNILSCKVAVD-GSGQSKGYGFVQFDTEEAAQKAIEKL 182
Query: 82 NFTPLNGKPIRI----MYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTC 137
N LN K + + R+ + ++ N+FVKNL +S L TF FG I +
Sbjct: 183 NGMLLNDKQVYVGPFLRKQERESTGDRAKFNNVFVKNLSESTTDDELKKTFGEFGTITSA 242
Query: 138 KIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENA----- 192
+ DG G+SK +GFV FE+ + A A++ NGK I DKE YV Q+K +RE+
Sbjct: 243 VVMRDGDGKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKIKF 302
Query: 193 ------ALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVN 246
A + N+YVKNL +++ D+ LK++FS YGTITS VMRD +G S+ GFV
Sbjct: 303 EQSMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGVSRGSGFVA 362
Query: 247 FENADEAAKAVDALNGKKFDDKEWYV 272
F +EA++A+ +NGK K YV
Sbjct: 363 FSTPEEASRALLEMNGKMVASKPLYV 388
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 96/186 (51%), Gaps = 19/186 (10%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
++V +L D +L F + G + S V RD +S +G+VNF + DAA A++ L
Sbjct: 215 VFVKNLSESTTDDELKKTFGEFGTITSAVVMRD-GDGKSKCFGFVNFESTDDAARAVEAL 273
Query: 82 NFTPLNGK-----------------PIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKAL 124
N ++ K I+ S ++ + + GA N++VKNLD SI + L
Sbjct: 274 NGKKIDDKEWYVGKAQKKSEREHELKIKFEQSMKEAADKYQGA-NLYVKNLDDSIADEKL 332
Query: 125 YDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQ 184
+ F +G I +CK+ D +G S+G GFV F E A A+ NGK++ K +YV+ Q
Sbjct: 333 KELFSSYGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVTLAQ 392
Query: 185 RKQDRE 190
RK+DR
Sbjct: 393 RKEDRR 398
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 439 bits (1129), Expect = e-123, Method: Compositional matrix adjust.
Identities = 209/341 (61%), Positives = 260/341 (76%), Gaps = 2/341 (0%)
Query: 20 TSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
SLYVGDL+ +N+ QL+DLF+Q+ QVVS+RVCRD + SLGY YVNFTN +DAA A +
Sbjct: 30 ASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKE 89
Query: 80 VLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKI 139
+LNFTPLN KPIRIM+S RDPSVRKSG+ N+F+KNLD SIDHKAL+DTF FG +L+CK+
Sbjct: 90 LLNFTPLNEKPIRIMFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGPVLSCKV 149
Query: 140 ATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKF 199
A DG+GQSKGYGFVQF+NEE+A++AI +G LI DK+VYV F R Q+R G KF
Sbjct: 150 ALDGNGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVRHQERARTN-GSPKF 208
Query: 200 NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDA 259
NVYVKN+SEA TD+DLK++F +G ITSA VM+D +GKS+CFGFVNF++ D AA AV+
Sbjct: 209 TNVYVKNISEASTDEDLKQLFGPFGMITSATVMKDANGKSRCFGFVNFQSPDSAAAAVEK 268
Query: 260 LNGKKF-DDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEK 318
LNG DDK +VG + EQ +K QGANLYLKNLDD+ ++EK
Sbjct: 269 LNGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGANLYLKNLDDDFNEEK 328
Query: 319 LRELFSEFGTITSCKIMRDPHGVSRGSGFVAFSTPEEATRA 359
L++LFSEFGT+TSC++M D HG S+GSGFVAFSTPEEA +A
Sbjct: 329 LKDLFSEFGTVTSCRVMLDSHGHSKGSGFVAFSTPEEANKA 369
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 145/269 (53%), Gaps = 21/269 (7%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
+++ +LDT I+ L+D F G V+S +V D QS GYG+V F N + A +A+ L
Sbjct: 120 VFIKNLDTSIDHKALHDTFAAFGPVLSCKVALD-GNGQSKGYGFVQFDNEEAAKSAIKQL 178
Query: 82 NFTPLNGKPIRI-MYSHRDPSVRKSGAA---NIFVKNLDKSIDHKALYDTFLVFGNILTC 137
+ +N K + + + R +G+ N++VKN+ ++ + L F FG I +
Sbjct: 179 DGMLINDKQVYVGFFVRHQERARTNGSPKFTNVYVKNISEASTDEDLKQLFGPFGMITSA 238
Query: 138 KIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGD-KEVYVSHFQRKQDRENAALGG 196
+ D +G+S+ +GFV F++ +SA A++ NG I D K ++V QRK +REN
Sbjct: 239 TVMKDANGKSRCFGFVNFQSPDSAAAAVEKLNGTAINDDKVLFVGRAQRKAERENEL--K 296
Query: 197 GKFN-------------NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFG 243
KF N+Y+KNL + ++ LK +FSE+GT+TS VM D G SK G
Sbjct: 297 AKFEQERISRYEKLQGANLYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLDSHGHSKGSG 356
Query: 244 FVNFENADEAAKAVDALNGKKFDDKEWYV 272
FV F +EA KA++ +NGK K +V
Sbjct: 357 FVAFSTPEEANKALNEMNGKLVGRKPLFV 385
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 18/191 (9%)
Query: 17 PMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAAT 76
P T++YV ++ D L LF G + S V +D A +S +G+VNF +P AA
Sbjct: 206 PKFTNVYVKNISEASTDEDLKQLFGPFGMITSATVMKD-ANGKSRCFGFVNFQSPDSAAA 264
Query: 77 ALDVLNFTPLNGKPIRIMYSHRDPSVR-----------------KSGAANIFVKNLDKSI 119
A++ LN T +N + + + + R K AN+++KNLD
Sbjct: 265 AVEKLNGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGANLYLKNLDDDF 324
Query: 120 DHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVY 179
+ + L D F FG + +C++ D G SKG GFV F E A A++ NGKL+G K ++
Sbjct: 325 NEEKLKDLFSEFGTVTSCRVMLDSHGHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPLF 384
Query: 180 VSHFQRKQDRE 190
V+ QRK++R+
Sbjct: 385 VAVAQRKEERK 395
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 439 bits (1129), Expect = e-123, Method: Compositional matrix adjust.
Identities = 209/341 (61%), Positives = 260/341 (76%), Gaps = 2/341 (0%)
Query: 20 TSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
SLYVGDL+ +N+ QL+DLF+Q+ QVVS+RVCRD + SLGY YVNFTN +DAA A +
Sbjct: 30 ASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKE 89
Query: 80 VLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKI 139
+LNFTPLN KPIRIM+S RDPSVRKSG+ N+F+KNLD SIDHKAL+DTF FG +L+CK+
Sbjct: 90 LLNFTPLNEKPIRIMFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGPVLSCKV 149
Query: 140 ATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKF 199
A DG+GQSKGYGFVQF+NEE+A++AI +G LI DK+VYV F R Q+R G KF
Sbjct: 150 ALDGNGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVRHQERARTN-GSPKF 208
Query: 200 NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDA 259
NVYVKN+SEA TD+DLK++F +G ITSA VM+D +GKS+CFGFVNF++ D AA AV+
Sbjct: 209 TNVYVKNISEASTDEDLKQLFGPFGMITSATVMKDANGKSRCFGFVNFQSPDSAAAAVEK 268
Query: 260 LNGKKF-DDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEK 318
LNG DDK +VG + EQ +K QGANLYLKNLDD+ ++EK
Sbjct: 269 LNGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGANLYLKNLDDDFNEEK 328
Query: 319 LRELFSEFGTITSCKIMRDPHGVSRGSGFVAFSTPEEATRA 359
L++LFSEFGT+TSC++M D HG S+GSGFVAFSTPEEA +A
Sbjct: 329 LKDLFSEFGTVTSCRVMLDSHGHSKGSGFVAFSTPEEANKA 369
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 145/269 (53%), Gaps = 21/269 (7%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
+++ +LDT I+ L+D F G V+S +V D QS GYG+V F N + A +A+ L
Sbjct: 120 VFIKNLDTSIDHKALHDTFAAFGPVLSCKVALD-GNGQSKGYGFVQFDNEEAAKSAIKQL 178
Query: 82 NFTPLNGKPIRI-MYSHRDPSVRKSGAA---NIFVKNLDKSIDHKALYDTFLVFGNILTC 137
+ +N K + + + R +G+ N++VKN+ ++ + L F FG I +
Sbjct: 179 DGMLINDKQVYVGFFVRHQERARTNGSPKFTNVYVKNISEASTDEDLKQLFGPFGMITSA 238
Query: 138 KIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGD-KEVYVSHFQRKQDRENAALGG 196
+ D +G+S+ +GFV F++ +SA A++ NG I D K ++V QRK +REN
Sbjct: 239 TVMKDANGKSRCFGFVNFQSPDSAAAAVEKLNGTAINDDKVLFVGRAQRKAERENEL--K 296
Query: 197 GKFN-------------NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFG 243
KF N+Y+KNL + ++ LK +FSE+GT+TS VM D G SK G
Sbjct: 297 AKFEQERISRYEKLQGANLYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLDSHGHSKGSG 356
Query: 244 FVNFENADEAAKAVDALNGKKFDDKEWYV 272
FV F +EA KA++ +NGK K +V
Sbjct: 357 FVAFSTPEEANKALNEMNGKLVGRKPLFV 385
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 18/191 (9%)
Query: 17 PMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAAT 76
P T++YV ++ D L LF G + S V +D A +S +G+VNF +P AA
Sbjct: 206 PKFTNVYVKNISEASTDEDLKQLFGPFGMITSATVMKD-ANGKSRCFGFVNFQSPDSAAA 264
Query: 77 ALDVLNFTPLNGKPIRIMYSHRDPSVR-----------------KSGAANIFVKNLDKSI 119
A++ LN T +N + + + + R K AN+++KNLD
Sbjct: 265 AVEKLNGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGANLYLKNLDDDF 324
Query: 120 DHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVY 179
+ + L D F FG + +C++ D G SKG GFV F E A A++ NGKL+G K ++
Sbjct: 325 NEEKLKDLFSEFGTVTSCRVMLDSHGHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPLF 384
Query: 180 VSHFQRKQDRE 190
V+ QRK++R+
Sbjct: 385 VAVAQRKEERK 395
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 416 bits (1068), Expect = e-116, Method: Compositional matrix adjust.
Identities = 197/341 (57%), Positives = 263/341 (77%), Gaps = 6/341 (1%)
Query: 20 TSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
+SLYVGDL +ND+QLYDLF+QI V+SVRVCRD TQ SLGYGYVN++N +DAA A++
Sbjct: 25 SSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAME 84
Query: 80 VLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKI 139
LN+ PLNGKPIRIM+SHRDP +RK+G AN+F+KNL+ SID+KAL++TF VFGN+L+CK+
Sbjct: 85 NLNYVPLNGKPIRIMFSHRDPLIRKTGFANLFIKNLETSIDNKALHETFSVFGNVLSCKV 144
Query: 140 ATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKF 199
A D +G SKG+GFVQF+N++SA+NAI+ +G L+ DK+VYV +F R Q+R + KF
Sbjct: 145 AMDSNGHSKGHGFVQFDNDQSAKNAIEKLDGMLMNDKKVYVGYFVRCQERSSP-----KF 199
Query: 200 NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDA 259
NVYVKNLSE+ T +DLK++F+ +G ITS ++M+ +G SKCFGFVNF+++D AA AV+
Sbjct: 200 TNVYVKNLSESYTYEDLKQLFNSFGVITSVLIMKYDNGNSKCFGFVNFQSSDSAATAVEK 259
Query: 260 LNGKKFDD-KEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEK 318
LNG +D K +VG EQ + +K+QGANLYLKN+D ++++EK
Sbjct: 260 LNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKSLNEEK 319
Query: 319 LRELFSEFGTITSCKIMRDPHGVSRGSGFVAFSTPEEATRA 359
L+ELFSEFGTITSCK+M D G S+G GFVAF+TPEEA++A
Sbjct: 320 LKELFSEFGTITSCKVMSDARGRSKGVGFVAFTTPEEASKA 360
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 148/264 (56%), Gaps = 15/264 (5%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
L++ +L+T I++ L++ F+ G V+S +V D + S G+G+V F N + A A++ L
Sbjct: 115 LFIKNLETSIDNKALHETFSVFGNVLSCKVAMD-SNGHSKGHGFVQFDNDQSAKNAIEKL 173
Query: 82 NFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIAT 141
+ +N K + + Y R N++VKNL +S ++ L F FG I + I
Sbjct: 174 DGMLMNDKKVYVGYFVRCQERSSPKFTNVYVKNLSESYTYEDLKQLFNSFGVITSVLIMK 233
Query: 142 DGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGD-KEVYVSHFQRKQDRENAALGG---- 196
+G SK +GFV F++ +SA A++ NG D K ++V Q+K +RE A L
Sbjct: 234 YDNGNSKCFGFVNFQSSDSAATAVEKLNGSTTNDGKVLFVGRAQKKSERE-AELKAFFEQ 292
Query: 197 ------GKFN--NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFE 248
KF N+Y+KN+ +++ ++ LK++FSE+GTITS VM D G+SK GFV F
Sbjct: 293 EKLKRYEKFQGANLYLKNIDKSLNEEKLKELFSEFGTITSCKVMSDARGRSKGVGFVAFT 352
Query: 249 NADEAAKAVDALNGKKFDDKEWYV 272
+EA+KA+D +NGK K YV
Sbjct: 353 TPEEASKAIDEMNGKIIGQKPVYV 376
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 107/197 (54%), Gaps = 18/197 (9%)
Query: 11 AQEANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTN 70
QE + P T++YV +L L LFN G + SV + + S +G+VNF +
Sbjct: 191 CQERSSPKFTNVYVKNLSESYTYEDLKQLFNSFGVITSVLIMK-YDNGNSKCFGFVNFQS 249
Query: 71 PKDAATALDVLNFTPLN-GKPIRI----MYSHRDPSVR------------KSGAANIFVK 113
AATA++ LN + N GK + + S R+ ++ K AN+++K
Sbjct: 250 SDSAATAVEKLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLK 309
Query: 114 NLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLI 173
N+DKS++ + L + F FG I +CK+ +D G+SKG GFV F E A AID NGK+I
Sbjct: 310 NIDKSLNEEKLKELFSEFGTITSCKVMSDARGRSKGVGFVAFTTPEEASKAIDEMNGKII 369
Query: 174 GDKEVYVSHFQRKQDRE 190
G K VYVS QRK++R+
Sbjct: 370 GQKPVYVSVAQRKEERK 386
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 341 bits (875), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 170/341 (49%), Positives = 230/341 (67%), Gaps = 1/341 (0%)
Query: 19 PTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATAL 78
P SLYVGDL +++DSQL+D F+ + SVR+CRD ++ +SL YGYVNF +P DA A+
Sbjct: 9 PASLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAI 68
Query: 79 DVLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCK 138
+V N + LNGK IR+M+S RDP RKS N+FVKNL +SID+ L D F FGNIL+ K
Sbjct: 69 EVKNHSTLNGKAIRVMWSRRDPDARKSCIGNVFVKNLAESIDNSGLEDMFKKFGNILSSK 128
Query: 139 IATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGK 198
+ G+SKGYGFVQFE EESA AI+ NG L+GDK++YV F +K DR ++ +
Sbjct: 129 VVMSEDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYVGKFVKKSDRISSG-PDTR 187
Query: 199 FNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVD 258
+ N+Y+KNL +++ L++ FS +G I S V +D +G SK FGFVNF+N ++A +A++
Sbjct: 188 YTNLYMKNLDLDISETLLREKFSSFGKIISLAVAKDSNGMSKGFGFVNFDNPEDAKRAME 247
Query: 259 ALNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEK 318
+NG + K YV Q E+ +E V KY+G+N+Y+KN+DDNV DE
Sbjct: 248 TMNGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDEG 307
Query: 319 LRELFSEFGTITSCKIMRDPHGVSRGSGFVAFSTPEEATRA 359
LR+ FS GTITS KIMRD G+S+G GFV FSTPEEA +A
Sbjct: 308 LRDHFSVCGTITSAKIMRDDKGISKGFGFVCFSTPEEANKA 348
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 147/266 (55%), Gaps = 16/266 (6%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
++V +L I++S L D+F + G ++S +V +S GYG+V F + A A++ L
Sbjct: 100 VFVKNLAESIDNSGLEDMFKKFGNILSSKVVMS-EDGKSKGYGFVQFETEESANAAIERL 158
Query: 82 NFTPLNGKPIRI----MYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTC 137
N + K I + S R S + N+++KNLD I L + F FG I++
Sbjct: 159 NGYLVGDKQIYVGKFVKKSDRISSGPDTRYTNLYMKNLDLDISETLLREKFSSFGKIISL 218
Query: 138 KIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENA----- 192
+A D +G SKG+GFV F+N E A+ A++ NG +G K +YV+ Q+K +RE
Sbjct: 219 AVAKDSNGMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQKKAEREQILHQQF 278
Query: 193 ------ALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVN 246
+ K +N+YVKN+ + ++D+ L+ FS GTITSA +MRD G SK FGFV
Sbjct: 279 EEKRKEQVLKYKGSNIYVKNIDDNVSDEGLRDHFSVCGTITSAKIMRDDKGISKGFGFVC 338
Query: 247 FENADEAAKAVDALNGKKFDDKEWYV 272
F +EA KAV++ +G F K YV
Sbjct: 339 FSTPEEANKAVNSFHGFMFHGKPLYV 364
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 105/186 (56%), Gaps = 17/186 (9%)
Query: 20 TSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
T+LY+ +LD +I+++ L + F+ G+++S+ V +D + S G+G+VNF NP+DA A++
Sbjct: 189 TNLYMKNLDLDISETLLREKFSSFGKIISLAVAKD-SNGMSKGFGFVNFDNPEDAKRAME 247
Query: 80 VLNFTPLNGKPIRIMYSH----------------RDPSVRKSGAANIFVKNLDKSIDHKA 123
+N L K + + + R V K +NI+VKN+D ++ +
Sbjct: 248 TMNGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDEG 307
Query: 124 LYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHF 183
L D F V G I + KI D G SKG+GFV F E A A+++F+G + K +YVS
Sbjct: 308 LRDHFSVCGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVSLA 367
Query: 184 QRKQDR 189
QRK+DR
Sbjct: 368 QRKEDR 373
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 316 bits (809), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 157/268 (58%), Positives = 200/268 (74%), Gaps = 5/268 (1%)
Query: 94 MYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFV 153
M+SHRDPS+RK+G AN+FVKNLD SID+K L+DTF FG +L+CK+A D +G+S GYGFV
Sbjct: 1 MFSHRDPSIRKTGFANVFVKNLDTSIDNKVLHDTFATFGTVLSCKVALDSNGKSLGYGFV 60
Query: 154 QFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDR-ENAALGGGKFNNVYVKNLSEAMT 212
Q++N ESA+ AI+ +G LI DK+ +V +F R+Q+R EN G KF NVYVKNL E T
Sbjct: 61 QYDNHESAKCAIEKLDGMLIKDKKAFVGYFIRRQERSEN---GSPKFTNVYVKNLLETDT 117
Query: 213 DDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKFDD-KEWY 271
D+DLKK+FS YG ITSAV+M+D +G SKCFGFVNF++ D AA AV+ LNG +D K Y
Sbjct: 118 DEDLKKLFSTYGVITSAVIMKDENGNSKCFGFVNFQSPDSAAAAVEKLNGTTTNDGKVLY 177
Query: 272 VGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLRELFSEFGTITS 331
VG + EQ + +K QGANLYLKNLD++++DEKL+E+FSEFGTITS
Sbjct: 178 VGRAQRKCEREAELRAKFEQEKIKRYEKLQGANLYLKNLDESINDEKLKEMFSEFGTITS 237
Query: 332 CKIMRDPHGVSRGSGFVAFSTPEEATRA 359
CK+M D HG S+G GFVAFST EEA++A
Sbjct: 238 CKVMFDAHGHSKGFGFVAFSTSEEASKA 265
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/268 (36%), Positives = 151/268 (56%), Gaps = 20/268 (7%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
++V +LDT I++ L+D F G V+S +V D + +SLGYG+V + N + A A++ L
Sbjct: 17 VFVKNLDTSIDNKVLHDTFATFGTVLSCKVALD-SNGKSLGYGFVQYDNHESAKCAIEKL 75
Query: 82 NFTPLNGKPIRIMYSHRDPSVRKSGAA---NIFVKNLDKSIDHKALYDTFLVFGNILTCK 138
+ + K + Y R ++G+ N++VKNL ++ + L F +G I +
Sbjct: 76 DGMLIKDKKAFVGYFIRRQERSENGSPKFTNVYVKNLLETDTDEDLKKLFSTYGVITSAV 135
Query: 139 IATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGD-KEVYVSHFQRKQDRENAALGGG 197
I D +G SK +GFV F++ +SA A++ NG D K +YV QRK +RE A
Sbjct: 136 IMKDENGNSKCFGFVNFQSPDSAAAAVEKLNGTTTNDGKVLYVGRAQRKCERE--AELRA 193
Query: 198 KFN-------------NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGF 244
KF N+Y+KNL E++ D+ LK++FSE+GTITS VM D G SK FGF
Sbjct: 194 KFEQEKIKRYEKLQGANLYLKNLDESINDEKLKEMFSEFGTITSCKVMFDAHGHSKGFGF 253
Query: 245 VNFENADEAAKAVDALNGKKFDDKEWYV 272
V F ++EA+KA++ ++GK K YV
Sbjct: 254 VAFSTSEEASKAINGMSGKIIGQKPLYV 281
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 104/195 (53%), Gaps = 18/195 (9%)
Query: 13 EANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPK 72
E P T++YV +L D L LF+ G + S + +D S +G+VNF +P
Sbjct: 98 ENGSPKFTNVYVKNLLETDTDEDLKKLFSTYGVITSAVIMKD-ENGNSKCFGFVNFQSPD 156
Query: 73 DAATALDVLNFTPLN-GKPIRIMYSHR----DPSVR------------KSGAANIFVKNL 115
AA A++ LN T N GK + + + R + +R K AN+++KNL
Sbjct: 157 SAAAAVEKLNGTTTNDGKVLYVGRAQRKCEREAELRAKFEQEKIKRYEKLQGANLYLKNL 216
Query: 116 DKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGD 175
D+SI+ + L + F FG I +CK+ D G SKG+GFV F E A AI+ +GK+IG
Sbjct: 217 DESINDEKLKEMFSEFGTITSCKVMFDAHGHSKGFGFVAFSTSEEASKAINGMSGKIIGQ 276
Query: 176 KEVYVSHFQRKQDRE 190
K +YV QRK+DR+
Sbjct: 277 KPLYVVVAQRKEDRK 291
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 291 bits (746), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 157/358 (43%), Positives = 226/358 (63%), Gaps = 17/358 (4%)
Query: 6 ETDAVAQEANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGY 65
E DAV P T LYVGDL +++ D+QLY F++ ++S RVC+D AT +SL YGY
Sbjct: 5 EKDAVPAS---PAAT-LYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGY 60
Query: 66 VNFTNPKDAATALDVLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALY 125
VN ++ ++A A+++ N + LNGK IR+M+ RD RKSG N+FVKNL SID+ L+
Sbjct: 61 VNLSSHQEAIRAIELKNHSSLNGKVIRVMWLSRDADARKSGKGNVFVKNLAASIDNVGLH 120
Query: 126 DTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQR 185
D F +GNIL+ KIA G+SKG+G++QF++EESA AI NG + DK++YV F R
Sbjct: 121 DLFQKYGNILSSKIARSEDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVGKFIR 180
Query: 186 KQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFV 245
K +R L KF N+YVKNL +T+ L + FS +G I S + +D +G+SK FGFV
Sbjct: 181 KSERSLPDL-DAKFTNLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDENGQSKGFGFV 239
Query: 246 NFENADEAAKAVDALNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQ----ETVDKYQ 301
N+++ D+A +A++A++G +F K YV + EQ + E K+
Sbjct: 240 NYDSPDDARRAMEAMDGSQFGSKILYVA--------RAQKKVEREQILHHLFVEKGLKHM 291
Query: 302 GANLYLKNLDDNVDDEKLRELFSEFGTITSCKIMRDPHGVSRGSGFVAFSTPEEATRA 359
G+N+Y+KN+D +V DE+LR+ FS G + S K+MRD G S+G GFV FST EA ++
Sbjct: 292 GSNIYVKNIDTSVGDEELRDHFSACGEVLSAKVMRDDKGTSKGFGFVCFSTVVEAFKS 349
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/262 (34%), Positives = 143/262 (54%), Gaps = 12/262 (4%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
++V +L I++ L+DLF + G ++S ++ R +S G+GY+ F + + A A+ +
Sbjct: 105 VFVKNLAASIDNVGLHDLFQKYGNILSSKIARS-EDGKSKGFGYIQFDSEESANVAIQKM 163
Query: 82 NFTPLNGKPIR----IMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTC 137
N + + K I I S R + N++VKNLD + K L + F FG I++
Sbjct: 164 NGSTVRDKQIYVGKFIRKSERSLPDLDAKFTNLYVKNLDPVVTEKHLGEKFSSFGKIVSL 223
Query: 138 KIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENA----- 192
I D +GQSKG+GFV +++ + A+ A++ +G G K +YV+ Q+K +RE
Sbjct: 224 AIKKDENGQSKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVARAQKKVEREQILHHLF 283
Query: 193 ALGGGKF--NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENA 250
G K +N+YVKN+ ++ D++L+ FS G + SA VMRD G SK FGFV F
Sbjct: 284 VEKGLKHMGSNIYVKNIDTSVGDEELRDHFSACGEVLSAKVMRDDKGTSKGFGFVCFSTV 343
Query: 251 DEAAKAVDALNGKKFDDKEWYV 272
EA K++ NG F K YV
Sbjct: 344 VEAFKSMSCFNGCMFHGKPLYV 365
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 97/183 (53%), Gaps = 13/183 (7%)
Query: 20 TSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
T+LYV +LD + + L + F+ G++VS+ + +D QS G+G+VN+ +P DA A++
Sbjct: 194 TNLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKD-ENGQSKGFGFVNYDSPDDARRAME 252
Query: 80 VLNFTPLNGKPIRIMYSHRDPSVR------------KSGAANIFVKNLDKSIDHKALYDT 127
++ + K + + + + K +NI+VKN+D S+ + L D
Sbjct: 253 AMDGSQFGSKILYVARAQKKVEREQILHHLFVEKGLKHMGSNIYVKNIDTSVGDEELRDH 312
Query: 128 FLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQ 187
F G +L+ K+ D G SKG+GFV F A ++ FNG + K +YV Q+K+
Sbjct: 313 FSACGEVLSAKVMRDDKGTSKGFGFVCFSTVVEAFKSMSCFNGCMFHGKPLYVDFAQKKE 372
Query: 188 DRE 190
DR+
Sbjct: 373 DRK 375
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 109/168 (64%), Gaps = 3/168 (1%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
+ YVG+LD +I++ L++LF Q G VV+V V +D T Q GYG+V F + +DA A+ V
Sbjct: 26 TAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKV 85
Query: 81 LNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILT-CKI 139
LN L GKPIR+ + +D G AN+F+ NLD +D K LYDTF FG I+T KI
Sbjct: 86 LNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKI 144
Query: 140 ATDG-SGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRK 186
D +G S+G+GF+ +++ E++ +AI+ NG+ + ++++ VS+ +K
Sbjct: 145 MRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKK 192
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 97/175 (55%), Gaps = 9/175 (5%)
Query: 101 SVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEE 159
S ++ A +V NLD I + L++ F+ G ++ + D + Q +GYGFV+F +EE
Sbjct: 18 SAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEE 77
Query: 160 SAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKI 219
A AI N + K + V+ + QD+++ +G N+++ NL + + L
Sbjct: 78 DADYAIKVLNMIKLYGKPIRVN--KASQDKKSLDVGA----NLFIGNLDPDVDEKLLYDT 131
Query: 220 FSEYGTI-TSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYV 272
FS +G I T+ +MRD D G S+ FGF+++++ + + A++A+NG+ +++ V
Sbjct: 132 FSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITV 186
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 82/153 (53%), Gaps = 20/153 (13%)
Query: 203 YVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVDALN 261
YV NL ++++ L ++F + G + + V +D V + + +GFV F + ++A A+ LN
Sbjct: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
Query: 262 GKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLRE 321
K K V Q ++S+ GANL++ NLD +VD++ L +
Sbjct: 88 MIKLYGKPIRV-----------NKASQDKKSLDV------GANLFIGNLDPDVDEKLLYD 130
Query: 322 LFSEFGTI-TSCKIMRDP-HGVSRGSGFVAFST 352
FS FG I T+ KIMRDP G SRG GF+++ +
Sbjct: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDS 163
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 141/292 (48%), Gaps = 35/292 (11%)
Query: 1 MAQIHETDAV--AQEANQPM-PTS------LYVGDLDTEINDSQLYDLFNQIGQVVSVRV 51
M Q + A+ AQ A P P S L++GDL ++++ LY F G++ SV+V
Sbjct: 32 MMQPQQPPAMWAAQSAQPPQQPASADEVRTLWIGDLQYWMDENYLYTCFGNTGELTSVKV 91
Query: 52 CRDLATQQSLGYGYVNFTNPKDAATALDVLNFT--PLNGKPIRI---MYSHRDPSVRKSG 106
R+ T QS GYG++ F A L N T P G+ R+ +S + S R+
Sbjct: 92 IRNKQTSQSEGYGFIEFNTRATAERVLQTYNGTIMPNGGQNYRLNWATFSAGERSSRQDD 151
Query: 107 AAN--IFVKNLDKSIDHKALYDTFLV-FGNILTCKIATDG-SGQSKGYGFVQFENEESAQ 162
+ IFV +L + L +TF + ++ K+ D +G+SKGYGFV+F +E
Sbjct: 152 GPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQM 211
Query: 163 NAIDNFNGKLIGDKEVYVSHFQRK------QDRENAALGGGKFNN------VYVKNLSEA 210
A+ G L + + + K Q + + GG+ N ++V NL
Sbjct: 212 RAMTEMQGVLCSTRPMRIGPATNKNPAATTQPKASYNPSGGQSENDPNNTTIFVGNLDPN 271
Query: 211 MTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNG 262
+TDD L+++F++YG + V ++ GK +C GFV F + A +A+ LNG
Sbjct: 272 VTDDHLRQVFTQYGEL---VHVKIPSGK-RC-GFVQFSDRSCAEEAIRVLNG 318
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 123/258 (47%), Gaps = 14/258 (5%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCK-IATDGSGQSKGYGFVQFENEESAQNAIDNF 168
+++ +L +D LY F G + + K I + QS+GYGF++F +A+ + +
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTY 121
Query: 169 NGKLI--GDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIF-SEYGT 225
NG ++ G + ++ ++ G + ++V +L+ +TD L++ F + Y +
Sbjct: 122 NGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNS 181
Query: 226 ITSA-VVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYVGXXXXX-XXXXX 283
+ A VV+ + G+SK +GFV F + E +A+ + G + +G
Sbjct: 182 VKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNKNPAATT 241
Query: 284 XXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLRELFSEFGTITSCKIMRDPHGVSR 343
+ S ++ + +++ NLD NV D+ LR++F+++G + KI P G +
Sbjct: 242 QPKASYNPSGGQSENDPNNTTIFVGNLDPNVTDDHLRQVFTQYGELVHVKI---PSG--K 296
Query: 344 GSGFVAF---STPEEATR 358
GFV F S EEA R
Sbjct: 297 RCGFVQFSDRSCAEEAIR 314
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 23/179 (12%)
Query: 21 SLYVGDLDTEINDSQLYDLFN-QIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
+++VGDL ++ D L + F + V +V D T +S GYG+V F + + A+
Sbjct: 156 TIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMT 215
Query: 80 VLNFTPLNGKPIRI-MYSHRDP--------SVRKSGA--------ANIFVKNLDKSIDHK 122
+ + +P+RI ++++P S SG IFV NLD ++
Sbjct: 216 EMQGVLCSTRPMRIGPATNKNPAATTQPKASYNPSGGQSENDPNNTTIFVGNLDPNVTDD 275
Query: 123 ALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVS 181
L F +G ++ KI + K GFVQF + A+ AI NG L+G + V +S
Sbjct: 276 HLRQVFTQYGELVHVKIPS-----GKRCGFVQFSDRSCAEEAIRVLNGTLLGGQNVRLS 329
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 136/280 (48%), Gaps = 40/280 (14%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
S+YVG++ + D L ++F G + ++ R ++ YG+V++ + AA A+
Sbjct: 61 SVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIR----KEKSSYGFVDYHDRASAALAIMT 116
Query: 81 LNFTPLNGKPIRIMYSHRDPSVR-KSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKI 139
L+ L G+ +++ +++ + S SG N+FV +L + L+ F V+ ++
Sbjct: 117 LHGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARV 176
Query: 140 ATDG-SGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYV----------SHFQRKQD 188
D +G+SKGYGFV F + + AQ+AI++ GK +G++++ S+ ++ D
Sbjct: 177 MWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKIND 236
Query: 189 RENAAL------GGGK-------------FNNVYVKNLSEAMTDDDLKKIFSEYGTITSA 229
+NA + GG+ + VYV NL +T +L F G A
Sbjct: 237 SQNAVVLTNGSSDGGQDNSNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALG----A 292
Query: 230 VVMRDVDGKS-KCFGFVNFENADEAAKAVDALNGKKFDDK 268
V+ +V +S K FGFV + +EAA A+ NG+ K
Sbjct: 293 GVLEEVRVQSGKGFGFVRYNTHEEAAMAIQMANGRPVRGK 332
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 8/171 (4%)
Query: 100 PSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEE 159
P S +++V N+ ++ K L + F G + CK+ + YGFV + +
Sbjct: 52 PGFDASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRK---EKSSYGFVDYHDRA 108
Query: 160 SAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKI 219
SA AI +G+ + + + V+ RE+ + G FN V+V +LS +TD L
Sbjct: 109 SAALAIMTLHGRQLYGQALKVNWAYANSSREDTS---GHFN-VFVGDLSPEVTDATLFAC 164
Query: 220 FSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVDALNGKKFDDKE 269
FS Y T + A VM D G+SK +GFV+F + +A A++ + GK +++
Sbjct: 165 FSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQ 215
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 76/194 (39%), Gaps = 37/194 (19%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
++VGDL E+ D+ L+ F+ RV D T +S GYG+V+F + +DA +A++ +
Sbjct: 147 VFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDM 206
Query: 82 NFTPLNGKPIRIMY----------------------------------SHRDPSVRKSGA 107
L + IR + S+ D
Sbjct: 207 TGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNPSY 266
Query: 108 ANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDN 167
++V NL + L+ F G + ++ KG+GFV++ E A AI
Sbjct: 267 TTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQ---SGKGFGFVRYNTHEEAAMAIQM 323
Query: 168 FNGKLIGDKEVYVS 181
NG+ + K + S
Sbjct: 324 ANGRPVRGKTMKCS 337
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 19/160 (11%)
Query: 201 NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDAL 260
+VYV N+ +TD L ++F G + ++R + +GFV++ + AA A+ L
Sbjct: 61 SVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRK---EKSSYGFVDYHDRASAALAIMTL 117
Query: 261 NGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLR 320
+G++ + V S ++T + N+++ +L V D L
Sbjct: 118 HGRQLYGQALKVNWAYA------------NSSREDTSGHF---NVFVGDLSPEVTDATLF 162
Query: 321 ELFSEFGTITSCKIMRDPH-GVSRGSGFVAFSTPEEATRA 359
FS + T + ++M D G S+G GFV+F ++A A
Sbjct: 163 ACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSA 202
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 136/280 (48%), Gaps = 40/280 (14%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
S+YVG++ + D L ++F G + ++ R ++ YG+V++ + AA A+
Sbjct: 61 SVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIR----KEKSSYGFVDYHDRASAALAIMT 116
Query: 81 LNFTPLNGKPIRIMYSHRDPSVR-KSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKI 139
L+ L G+ +++ +++ + S SG N+FV +L + L+ F V+ ++
Sbjct: 117 LHGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARV 176
Query: 140 ATDG-SGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYV----------SHFQRKQD 188
D +G+SKGYGFV F + + AQ+AI++ GK +G++++ S+ ++ D
Sbjct: 177 MWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKIND 236
Query: 189 RENAAL------GGGK-------------FNNVYVKNLSEAMTDDDLKKIFSEYGTITSA 229
+NA + GG+ + VYV NL +T +L F G A
Sbjct: 237 SQNAVVLTNGSSDGGQDNSNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALG----A 292
Query: 230 VVMRDVDGKS-KCFGFVNFENADEAAKAVDALNGKKFDDK 268
V+ +V +S K FGFV + +EAA A+ NG+ K
Sbjct: 293 GVLEEVRVQSGKGFGFVRYNTHEEAAMAIQMANGRPVRGK 332
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 8/171 (4%)
Query: 100 PSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEE 159
P S +++V N+ ++ K L + F G + CK+ + YGFV + +
Sbjct: 52 PGFDASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRK---EKSSYGFVDYHDRA 108
Query: 160 SAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKI 219
SA AI +G+ + + + V+ RE+ + G FN V+V +LS +TD L
Sbjct: 109 SAALAIMTLHGRQLYGQALKVNWAYANSSREDTS---GHFN-VFVGDLSPEVTDATLFAC 164
Query: 220 FSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVDALNGKKFDDKE 269
FS Y T + A VM D G+SK +GFV+F + +A A++ + GK +++
Sbjct: 165 FSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQ 215
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 76/194 (39%), Gaps = 37/194 (19%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
++VGDL E+ D+ L+ F+ RV D T +S GYG+V+F + +DA +A++ +
Sbjct: 147 VFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDM 206
Query: 82 NFTPLNGKPIRIMY----------------------------------SHRDPSVRKSGA 107
L + IR + S+ D
Sbjct: 207 TGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNPSY 266
Query: 108 ANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDN 167
++V NL + L+ F G + ++ KG+GFV++ E A AI
Sbjct: 267 TTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQ---SGKGFGFVRYNTHEEAAMAIQM 323
Query: 168 FNGKLIGDKEVYVS 181
NG+ + K + S
Sbjct: 324 ANGRPVRGKTMKCS 337
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 19/160 (11%)
Query: 201 NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDAL 260
+VYV N+ +TD L ++F G + ++R + +GFV++ + AA A+ L
Sbjct: 61 SVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRK---EKSSYGFVDYHDRASAALAIMTL 117
Query: 261 NGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLR 320
+G++ + V S ++T + N+++ +L V D L
Sbjct: 118 HGRQLYGQALKVNWAYA------------NSSREDTSGHF---NVFVGDLSPEVTDATLF 162
Query: 321 ELFSEFGTITSCKIMRDPH-GVSRGSGFVAFSTPEEATRA 359
FS + T + ++M D G S+G GFV+F ++A A
Sbjct: 163 ACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSA 202
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 136/280 (48%), Gaps = 40/280 (14%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
S+YVG++ + D L ++F G + ++ R ++ YG+V++ + AA A+
Sbjct: 45 SVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIR----KEKSSYGFVDYHDRASAALAIMT 100
Query: 81 LNFTPLNGKPIRIMYSHRDPSVR-KSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKI 139
L+ L G+ +++ +++ + S SG N+FV +L + L+ F V+ ++
Sbjct: 101 LHGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARV 160
Query: 140 ATDG-SGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYV----------SHFQRKQD 188
D +G+SKGYGFV F + + AQ+AI++ GK +G++++ S+ ++ D
Sbjct: 161 MWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKIND 220
Query: 189 RENAAL------GGGK-------------FNNVYVKNLSEAMTDDDLKKIFSEYGTITSA 229
+NA + GG+ + VYV NL +T +L F G A
Sbjct: 221 SQNAVVLTNGSSDGGQDNSNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALG----A 276
Query: 230 VVMRDVDGKS-KCFGFVNFENADEAAKAVDALNGKKFDDK 268
V+ +V +S K FGFV + +EAA A+ NG+ K
Sbjct: 277 GVLEEVRVQSGKGFGFVRYNTHEEAAMAIQMANGRPVRGK 316
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 8/171 (4%)
Query: 100 PSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEE 159
P S +++V N+ ++ K L + F G + CK+ + YGFV + +
Sbjct: 36 PGFDASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRK---EKSSYGFVDYHDRA 92
Query: 160 SAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKI 219
SA AI +G+ + + + V+ RE+ + G FN V+V +LS +TD L
Sbjct: 93 SAALAIMTLHGRQLYGQALKVNWAYANSSREDTS---GHFN-VFVGDLSPEVTDATLFAC 148
Query: 220 FSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVDALNGKKFDDKE 269
FS Y T + A VM D G+SK +GFV+F + +A A++ + GK +++
Sbjct: 149 FSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQ 199
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 76/194 (39%), Gaps = 37/194 (19%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
++VGDL E+ D+ L+ F+ RV D T +S GYG+V+F + +DA +A++ +
Sbjct: 131 VFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDM 190
Query: 82 NFTPLNGKPIRIMY----------------------------------SHRDPSVRKSGA 107
L + IR + S+ D
Sbjct: 191 TGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNPSY 250
Query: 108 ANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDN 167
++V NL + L+ F G + ++ KG+GFV++ E A AI
Sbjct: 251 TTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQ---SGKGFGFVRYNTHEEAAMAIQM 307
Query: 168 FNGKLIGDKEVYVS 181
NG+ + K + S
Sbjct: 308 ANGRPVRGKTMKCS 321
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 19/160 (11%)
Query: 201 NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDAL 260
+VYV N+ +TD L ++F G + ++R + +GFV++ + AA A+ L
Sbjct: 45 SVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRK---EKSSYGFVDYHDRASAALAIMTL 101
Query: 261 NGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLR 320
+G++ + V S ++T + N+++ +L V D L
Sbjct: 102 HGRQLYGQALKVNWAYA------------NSSREDTSGHF---NVFVGDLSPEVTDATLF 146
Query: 321 ELFSEFGTITSCKIMRDPH-GVSRGSGFVAFSTPEEATRA 359
FS + T + ++M D G S+G GFV+F ++A A
Sbjct: 147 ACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSA 186
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 136/277 (49%), Gaps = 31/277 (11%)
Query: 12 QEANQPMPTS------LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGY 65
Q++ P P+S L++GDL ++++ LY+ F+ G+V SV+V R+ T QS GYG+
Sbjct: 60 QQSAVPPPSSADEVKTLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGF 119
Query: 66 VNFTNPKDAATALDVLNFT--PLNGKPIRIMYSHRDPSVRK---SGAANIFVKNLDKSID 120
+ F + A L N T P G+ R+ ++ ++ S IFV +L +
Sbjct: 120 LEFISRAGAERVLQTFNGTIMPNGGQNFRLNWATFSSGEKRHDDSPDYTIFVGDLAADVS 179
Query: 121 HKALYDTFLV-FGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEV 178
L + F + ++ K+ D +G++KGYGFV+F +E A+ G L + +
Sbjct: 180 DHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPM 239
Query: 179 YVSHFQRK-----------QDRENAALGGGKFNN--VYVKNLSEAMTDDDLKKIFSEYGT 225
+ K Q+ + A NN ++V NL +TD+ LK++F++YG
Sbjct: 240 RIGPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGE 299
Query: 226 ITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNG 262
+ V ++ GK +C GFV F + A +A+ LNG
Sbjct: 300 L---VHVKIPSGK-RC-GFVQFADRSSAEEALRVLNG 331
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 124/265 (46%), Gaps = 29/265 (10%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNF 168
+++ +L +D LY+ F G + + K+ + + QS+GYGF++F + A+ + F
Sbjct: 76 LWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAERVLQTF 135
Query: 169 NGKLIGDK--------EVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIF 220
NG ++ + + S +R D + ++V +L+ ++D L ++F
Sbjct: 136 NGTIMPNGGQNFRLNWATFSSGEKRHDDSPDYT--------IFVGDLAADVSDHHLTEVF 187
Query: 221 -SEYGTITSA-VVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYVGXXXXX 278
+ Y ++ A VV+ G++K +GFV F + E +A+ + G + +G
Sbjct: 188 RTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPASNK 247
Query: 279 X--XXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLRELFSEFGTITSCKIMR 336
Q+ Q + + +++ NLD NV DE L+++F+++G + KI
Sbjct: 248 NLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELVHVKI-- 305
Query: 337 DPHGVSRGSGFVAF---STPEEATR 358
P G + GFV F S+ EEA R
Sbjct: 306 -PSG--KRCGFVQFADRSSAEEALR 327
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 30/183 (16%)
Query: 21 SLYVGDLDTEINDSQLYDLF-NQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
+++VGDL +++D L ++F + V +V D T ++ GYG+V F + + A+
Sbjct: 168 TIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMT 227
Query: 80 VLNFTPLNGKPIRI-------------MYSHRDPSVRKSGAAN--------IFVKNLDKS 118
+ + +P+RI S+++P + GA N IFV NLD +
Sbjct: 228 EMQGVLCSTRPMRIGPASNKNLGTQTSKASYQNP---QGGAQNENDPNNTTIFVGNLDPN 284
Query: 119 IDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEV 178
+ + L F +G ++ KI + K GFVQF + SA+ A+ NG L+G + V
Sbjct: 285 VTDEHLKQVFTQYGELVHVKIPS-----GKRCGFVQFADRSSAEEALRVLNGTLLGGQNV 339
Query: 179 YVS 181
+S
Sbjct: 340 RLS 342
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 11 AQEANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTN 70
AQ N P T+++VG+LD + D L +F Q G++V V++ G+V F +
Sbjct: 265 AQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELVHVKIPSGKRC------GFVQFAD 318
Query: 71 PKDAATALDVLNFTPLNGKPIRIMYSHRDPSVRKS 105
A AL VLN T L G+ +R+ + R P+ +++
Sbjct: 319 RSSAEEALRVLNGTLLGGQNVRLSWG-RSPANKQT 352
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 132/277 (47%), Gaps = 41/277 (14%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
S+YVG++ T++ + L ++F G V ++ R ++ YG++++ + + AA A+
Sbjct: 63 SVYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFR----KEKSSYGFIHYFDRRSAALAILT 118
Query: 81 LNFTPLNGKPIRIMYSHRDPSVR-KSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKI 139
LN L G+PI++ +++ SG NIFV +L + L+ F V+ + ++
Sbjct: 119 LNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARV 178
Query: 140 ATD-GSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSH-------FQRKQDRE- 190
D +G+S+G+GFV F +++ AQ+AI++ GK +G +++ + + KQ+ +
Sbjct: 179 MWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDS 238
Query: 191 -------NAALGGGK-------------FNNVYVKNLSEAMTDDDLKKIFSEY--GTITS 228
N + GK + VYV NL T DL + F G I
Sbjct: 239 KSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEE 298
Query: 229 AVVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKF 265
V RD K FGFV + EAA A+ N + +
Sbjct: 299 VRVQRD-----KGFGFVRYSTHAEAALAIQMGNAQSY 330
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 129/275 (46%), Gaps = 41/275 (14%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
S+YVG++ ++++ L +LF+ G + ++ R ++ YG+V++ + AA A+
Sbjct: 47 SVYVGNIHPQVSEPLLQELFSSAGALEGCKLIR----KEKSSYGFVDYFDRSSAAIAIVT 102
Query: 81 LNFTPLNGKPIRIMYSH-RDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKI 139
LN + G+ I++ +++ R SG +IFV +L + LY F + + ++
Sbjct: 103 LNGRNIFGQSIKVNWAYTRGQREDTSGHFHIFVGDLSPEVTDATLYACFSAYSSCSDARV 162
Query: 140 ATD-GSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHF----------QRKQD 188
D +G+S+G+GFV F N++ AQ+AI++ GK +G +++ + Q +
Sbjct: 163 MWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWATKGANMNGENQSSES 222
Query: 189 RENAALGGG------------------KFNNVYVKNLSEAMTDDDLKKIFSEY--GTITS 228
+ L G ++ VYV NL+ +T DL F GTI
Sbjct: 223 KSVVELTSGTSEEAQEMTSDDSPEKNPQYTTVYVGNLAPEVTSVDLHHHFHALGVGTIED 282
Query: 229 AVVMRDVDGKSKCFGFVNFENADEAAKAVDALNGK 263
V RD K FGFV + EAA A+ N +
Sbjct: 283 VRVQRD-----KGFGFVRYSTHGEAALAIQMGNTR 312
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 121/287 (42%), Gaps = 32/287 (11%)
Query: 93 IMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGF 152
I+ + P S +++V N+ + L + F G + CK+ + YGF
Sbjct: 31 ILSGNLPPGFDSSTCRSVYVGNIHPQVSEPLLQELFSSAGALEGCKLIRK---EKSSYGF 87
Query: 153 VQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMT 212
V + + SA AI NG+ I + + V+ + RE+ + G F+ ++V +LS +T
Sbjct: 88 VDYFDRSSAAIAIVTLNGRNIFGQSIKVNWAYTRGQREDTS---GHFH-IFVGDLSPEVT 143
Query: 213 DDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKFDDKE-- 269
D L FS Y + + A VM D G+S+ FGFV+F N EA A++ L GK ++
Sbjct: 144 DATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIR 203
Query: 270 --WYV--------GXXXXXXXXXXXXXXQHEQSMQETVD-----KYQGANLYLKNLDDNV 314
W E++ + T D Q +Y+ NL V
Sbjct: 204 CNWATKGANMNGENQSSESKSVVELTSGTSEEAQEMTSDDSPEKNPQYTTVYVGNLAPEV 263
Query: 315 DDEKLRELFSEF--GTITSCKIMRDPHGVSRGSGFVAFSTPEEATRA 359
L F GTI ++ RD +G GFV +ST EA A
Sbjct: 264 TSVDLHHHFHALGVGTIEDVRVQRD-----KGFGFVRYSTHGEAALA 305
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 126/267 (47%), Gaps = 37/267 (13%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
+L++GDL + +++S L+ F G++ SV+V R+ + S GYG+ F + ATA V
Sbjct: 98 TLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFS---HATAEKV 154
Query: 81 LN-----FTPLNGKPIRIMYSHRDPSVRKSGAAN-----IFVKNLDKSIDHKALYDTF-L 129
L P + R+ ++ S G+ N IFV +L + L++TF
Sbjct: 155 LQNYAGILMPNADQAFRLNWATF--STGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSS 212
Query: 130 VFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQD 188
+ ++ K+ D +G+SKGYGFV+F +E A+ NG + + + ++
Sbjct: 213 SYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKS 272
Query: 189 RENAALGGGKFN-------------NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDV 235
+ GG+ N ++V L +TD+DLK+ FS+YG I S +
Sbjct: 273 SGHQP--GGQSNGTSSQSEADSTNTTIFVGGLDSNVTDEDLKQTFSQYGEIASVKIP--- 327
Query: 236 DGKSKCFGFVNFENADEAAKAVDALNG 262
K GFV F N + A +A+ LNG
Sbjct: 328 --VGKGCGFVQFANRNNAEEALQKLNG 352
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 121/258 (46%), Gaps = 18/258 (6%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCK-IATDGSGQSKGYGFVQFENEESAQNAIDNF 168
+++ +L +D L+ F G I + K I SG S+GYGF +F + +A+ + N+
Sbjct: 99 LWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQNY 158
Query: 169 NGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNV-----YVKNLSEAMTDDDLKKIFSE- 222
G L+ + + + + + G +NV +V +L+ +TD L + FS
Sbjct: 159 AGILMPNADQAF-----RLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSS 213
Query: 223 YGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYVGXXXXXXXX 281
Y ++ +A V+ D + G+SK +GFV F + E ++A+ +NG + +G
Sbjct: 214 YPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSS 273
Query: 282 XXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLRELFSEFGTITSCKIMRDPHGV 341
Q + ++ +++ LD NV DE L++ FS++G I S KI V
Sbjct: 274 GHQPGGQSNGTSSQSEADSTNTTIFVGGLDSNVTDEDLKQTFSQYGEIASVKIP-----V 328
Query: 342 SRGSGFVAFSTPEEATRA 359
+G GFV F+ A A
Sbjct: 329 GKGCGFVQFANRNNAEEA 346
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 22/178 (12%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQ-IGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
S++VGDL ++ DS L++ F+ V + +V D T +S GYG+V F + + + A+
Sbjct: 191 SIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMT 250
Query: 80 VLNFTPLNGKPIRI------MYSHRDPSVRKSGAAN----------IFVKNLDKSIDHKA 123
+N + +P+RI S P + +G ++ IFV LD ++ +
Sbjct: 251 QMNGVYCSSRPMRIGAATPRKSSGHQPGGQSNGTSSQSEADSTNTTIFVGGLDSNVTDED 310
Query: 124 LYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVS 181
L TF +G I + KI KG GFVQF N +A+ A+ NG +IG + V +S
Sbjct: 311 LKQTFSQYGEIASVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRLS 363
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 123/263 (46%), Gaps = 28/263 (10%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
+L+VGDL ++++ L+ F G++ S++V R+ T Q+ GYG+V FT+ A L
Sbjct: 94 TLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQT 153
Query: 81 LN--FTPLNGKPIRIMYSHRDPSVRKSG----AANIFVKNLDKSIDHKALYDTFL-VFGN 133
P +P R+ ++ K +IFV +L + L +TF + +
Sbjct: 154 YAGMLMPNTEQPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLLETFSDKYPS 213
Query: 134 ILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENA 192
+ K+ D +G+SKGYGFV+F ++ A++ NG + + + + + +
Sbjct: 214 VKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAATPR--KSSG 271
Query: 193 ALGGGKFN-------------NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKS 239
GG+ N ++V L + T +DL++ FS+YG I S +
Sbjct: 272 YQQGGQSNGTPSQSDTDSTNTTIFVGGLDPSATAEDLRQPFSQYGEIVSVKIP-----VG 326
Query: 240 KCFGFVNFENADEAAKAVDALNG 262
K GFV F N + A +A+ LNG
Sbjct: 327 KGCGFVQFANRNNAEEALQKLNG 349
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 129/281 (45%), Gaps = 29/281 (10%)
Query: 95 YSHRDPSVRKSGAA----NIFVKNLDKSIDHKALYDTFLVFGNILTCK-IATDGSGQSKG 149
Y H P V +A ++V +L +D L+ F G I + K I + Q++G
Sbjct: 76 YLHHVPHVHHGSSAADNKTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEG 135
Query: 150 YGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAAL---GGGKFN------ 200
YGFV+F + +A+ + + G L+ + E + R N A G K +
Sbjct: 136 YGFVEFTSHGTAEKVLQTYAGMLMPNTE--------QPFRLNWATFSTGDHKRSDNVPDL 187
Query: 201 NVYVKNLSEAMTDDDLKKIFSE-YGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVD 258
+++V +L+ +TD L + FS+ Y ++ +A V+ D + G+SK +GFV F + E +KA++
Sbjct: 188 SIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALN 247
Query: 259 ALNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEK 318
+NG + +G Q + ++ +++ LD + E
Sbjct: 248 EMNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGTPSQSDTDSTNTTIFVGGLDPSATAED 307
Query: 319 LRELFSEFGTITSCKIMRDPHGVSRGSGFVAFSTPEEATRA 359
LR+ FS++G I S KI V +G GFV F+ A A
Sbjct: 308 LRQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNNAEEA 343
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 22/197 (11%)
Query: 21 SLYVGDLDTEINDSQLYDLFN-QIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
S++VGDL ++ D+ L + F+ + V + +V D T +S GYG+V F + + + AL+
Sbjct: 188 SIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALN 247
Query: 80 VLNFTPLNGKPIRI--MYSHRDPSVRKSGAAN--------------IFVKNLDKSIDHKA 123
+N + + +RI + ++ G +N IFV LD S +
Sbjct: 248 EMNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGTPSQSDTDSTNTTIFVGGLDPSATAED 307
Query: 124 LYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHF 183
L F +G I++ KI KG GFVQF N +A+ A+ NG +G + V +S
Sbjct: 308 LRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTTVGKQTVRLSWG 362
Query: 184 QRKQDRENAALGGGKFN 200
+ +++ + G +N
Sbjct: 363 RNPANKQFRSEFGSPWN 379
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 127/282 (45%), Gaps = 44/282 (15%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
+L++GDL ++++ L F+ G+V+S+++ R+ T Q GYG++ F + A L
Sbjct: 16 TLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQT 75
Query: 81 LNFTPLNG--KPIRIMYSHRDPSVRKSGAA---NIFVKNLDKSIDHKALYDTFLV-FGNI 134
N T + G + R+ ++ R+ A +IFV +L + L +TF +G++
Sbjct: 76 YNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSV 135
Query: 135 LTCKIATD-GSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQD---RE 190
K+ TD +G+SKGYGFV+F +E A+ NG + + +S K+ ++
Sbjct: 136 RGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTGYQQ 195
Query: 191 N------------------AALGGGKFNNV-----------YVKNLSEAMTDDDLKKIFS 221
N A N V YV NL +++++LK+ F
Sbjct: 196 NPYAAVVAAAPVPKAIYPVPAYTTAPVNTVPPEYDVNNTTIYVGNLDLNVSEEELKQNFL 255
Query: 222 EYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNGK 263
++G I S V K GFV F A +A+ + GK
Sbjct: 256 QFGEIVSVKVH-----PGKACGFVQFGARASAEEAIQKMQGK 292
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 89/216 (41%), Gaps = 43/216 (19%)
Query: 21 SLYVGDLDTEINDSQLYDLF-NQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
S++VGDL ++ D L + F G V +V D T +S GYG+V F++ + A+
Sbjct: 109 SIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMS 168
Query: 80 VLNFTPLNGKPIRIMYSHRD-------------------------------------PSV 102
+N + +P+RI + P
Sbjct: 169 EMNGVYCSTRPMRISAATPKKTTGYQQNPYAAVVAAAPVPKAIYPVPAYTTAPVNTVPPE 228
Query: 103 RKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQ 162
I+V NLD ++ + L FL FG I++ K+ K GFVQF SA+
Sbjct: 229 YDVNNTTIYVGNLDLNVSEEELKQNFLQFGEIVSVKVHP-----GKACGFVQFGARASAE 283
Query: 163 NAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGK 198
AI GK++G + + VS + + R++ G G+
Sbjct: 284 EAIQKMQGKILGQQVIRVSWGRPQTARQDVPGGWGQ 319
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 128/277 (46%), Gaps = 36/277 (12%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNF 168
I++ +L +D L++ F G + + K+ + +GQS+GYGFV+F A+ + NF
Sbjct: 118 IWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQNF 177
Query: 169 NGKLIGDKEVYVSHFQRKQDRENAALGGGKFNN--------VYVKNLSEAMTDDDLKKIF 220
NG ++ + + F+ +AA GGG+ + V+V +L+ +TD L++ F
Sbjct: 178 NGTMMPNTD---QAFRLNWATFSAAGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQETF 234
Query: 221 -SEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNG---------------- 262
S++ +I A V+ D + G+SK +GFV F + E +A+ +NG
Sbjct: 235 ASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRPMRVGVATPK 294
Query: 263 KKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLREL 322
K + + + Y Q Q D +++ LD ++ DE LR+
Sbjct: 295 KTYGNPQQYSSQAVVLAGGGGHSNGAMAQGSQSEGDS-NNTTIFVGGLDSDISDEDLRQP 353
Query: 323 FSEFGTITSCKIMRDPHGVSRGSGFVAFSTPEEATRA 359
F +FG + S KI V +G GFV + + A A
Sbjct: 354 FLQFGDVISVKIP-----VGKGCGFVQLADRKNAEEA 385
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 124/280 (44%), Gaps = 43/280 (15%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
++++GDL ++++ L++ F G+V S +V R+ T QS GYG+V F A L
Sbjct: 117 TIWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQN 176
Query: 81 LNFT--PLNGKPIRIMYSHRDPS----VRKSGAA----NIFVKNLDKSIDHKALYDTFLV 130
N T P + R+ ++ + R+S A ++FV +L + L +TF
Sbjct: 177 FNGTMMPNTDQAFRLNWATFSAAGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQETFAS 236
Query: 131 -FGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQD 188
F +I K+ D +G+SKGYGFV+F +E A+ NG + + V K+
Sbjct: 237 KFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRPMRVGVATPKKT 296
Query: 189 RENA----------ALGGGKFN----------------NVYVKNLSEAMTDDDLKKIFSE 222
N A GGG N ++V L ++D+DL++ F +
Sbjct: 297 YGNPQQYSSQAVVLAGGGGHSNGAMAQGSQSEGDSNNTTIFVGGLDSDISDEDLRQPFLQ 356
Query: 223 YGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNG 262
+G + S + K GFV + A +A+ LNG
Sbjct: 357 FGDVISVKIP-----VGKGCGFVQLADRKNAEEAIQGLNG 391
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 37/193 (19%)
Query: 21 SLYVGDLDTEINDSQLYDLF-NQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
S++VGDL ++ D+ L + F ++ + +V D T +S GYG+V F + + A+
Sbjct: 215 SVFVGDLAIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMT 274
Query: 80 VLNFTPLNGKPIRI-------------MYSHRDPSVRKSGA------------------A 108
+N + +P+R+ YS + + G
Sbjct: 275 EMNGVYCSSRPMRVGVATPKKTYGNPQQYSSQAVVLAGGGGHSNGAMAQGSQSEGDSNNT 334
Query: 109 NIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNF 168
IFV LD I + L FL FG++++ KI KG GFVQ + ++A+ AI
Sbjct: 335 TIFVGGLDSDISDEDLRQPFLQFGDVISVKIPV-----GKGCGFVQLADRKNAEEAIQGL 389
Query: 169 NGKLIGDKEVYVS 181
NG +IG + V +S
Sbjct: 390 NGTVIGKQTVRLS 402
>Medtr1723s0010.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | scaffold1723:1189-955 | 20130731
Length = 78
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 45/53 (84%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKD 73
SLYVGDL+ +N++QLY+LFNQIGQVVS+RVCRD + SLGY YVNF+N +D
Sbjct: 26 SLYVGDLEGNVNEAQLYELFNQIGQVVSIRVCRDQTMRLSLGYAYVNFSNARD 78
>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 354
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 17/247 (6%)
Query: 17 PMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAAT 76
P + +YVG + + L + +IG+VV VR+ + ++ G+ +V + N + A+
Sbjct: 107 PHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASK 166
Query: 77 ALDVLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFG-NIL 135
A++ LN T G+ I+ S +F+ N+ +S K L G +
Sbjct: 167 AIEELNNTEFKGRKIKCSTSQ--------AKNRLFIGNIPRSWGEKDLKKVVTDIGPGVT 218
Query: 136 TCKIATDGSGQS--KGYGFVQFENEESAQNAIDNFNGK--LIGDKEVYVSHFQRKQDREN 191
++ D S +G+ F+ + N + A+ +GD VS K +
Sbjct: 219 AVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWADPKNSDSS 278
Query: 192 AALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSK-CFGFVNFENA 250
A+ + VYVKNL + +T + LKK+F +G IT V+ G+ K GFV+F
Sbjct: 279 AS---SQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAER 335
Query: 251 DEAAKAV 257
A KA+
Sbjct: 336 SNAMKAL 342
>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 111/247 (44%), Gaps = 17/247 (6%)
Query: 17 PMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAAT 76
P + +YVG + + L + +IG+VV VR+ + ++ G+ +V + N + A+
Sbjct: 107 PHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASK 166
Query: 77 ALDVLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILT 136
A++ LN T G+ I+ S +F+ N+ +S K L G +T
Sbjct: 167 AIEELNNTEFKGRKIKCSTSQ--------AKNRLFIGNIPRSWGEKDLKKVVTDIGPGVT 218
Query: 137 C-KIATDGSGQS--KGYGFVQFENEESAQNAIDNFNGK--LIGDKEVYVSHFQRKQDREN 191
++ D S +G+ F+ + N + A+ +GD VS K +
Sbjct: 219 AVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWADPKNSDSS 278
Query: 192 AALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKC-FGFVNFENA 250
A+ + VYVKNL + +T + LKK+F +G IT V+ G+ K GFV+F
Sbjct: 279 AS---SQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAER 335
Query: 251 DEAAKAV 257
A KA+
Sbjct: 336 SNAMKAL 342
>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 111/247 (44%), Gaps = 17/247 (6%)
Query: 17 PMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAAT 76
P + +YVG + + L + +IG+VV VR+ + ++ G+ +V + N + A+
Sbjct: 107 PHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASK 166
Query: 77 ALDVLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILT 136
A++ LN T G+ I+ S +F+ N+ +S K L G +T
Sbjct: 167 AIEELNNTEFKGRKIKCSTSQ--------AKNRLFIGNIPRSWGEKDLKKVVTDIGPGVT 218
Query: 137 C-KIATDGSGQS--KGYGFVQFENEESAQNAIDNFNGK--LIGDKEVYVSHFQRKQDREN 191
++ D S +G+ F+ + N + A+ +GD VS K +
Sbjct: 219 AVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWADPKNSDSS 278
Query: 192 AALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKC-FGFVNFENA 250
A+ + VYVKNL + +T + LKK+F +G IT V+ G+ K GFV+F
Sbjct: 279 AS---SQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAER 335
Query: 251 DEAAKAV 257
A KA+
Sbjct: 336 SNAMKAL 342
>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 111/247 (44%), Gaps = 17/247 (6%)
Query: 17 PMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAAT 76
P + +YVG + + L + +IG+VV VR+ + ++ G+ +V + N + A+
Sbjct: 107 PHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASK 166
Query: 77 ALDVLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILT 136
A++ LN T G+ I+ S +F+ N+ +S K L G +T
Sbjct: 167 AIEELNNTEFKGRKIKCSTSQ--------AKNRLFIGNIPRSWGEKDLKKVVTDIGPGVT 218
Query: 137 C-KIATDGSGQS--KGYGFVQFENEESAQNAIDNFNGK--LIGDKEVYVSHFQRKQDREN 191
++ D S +G+ F+ + N + A+ +GD VS K +
Sbjct: 219 AVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWADPKNSDSS 278
Query: 192 AALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKC-FGFVNFENA 250
A+ + VYVKNL + +T + LKK+F +G IT V+ G+ K GFV+F
Sbjct: 279 AS---SQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAER 335
Query: 251 DEAAKAV 257
A KA+
Sbjct: 336 SNAMKAL 342
>Medtr1889s0010.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| LC | scaffold1889:421-1063 | 20130731
Length = 88
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 45/57 (78%)
Query: 20 TSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAAT 76
SLYVGDL+ ++N++QLY+ QIG V+SVRVCRD TQ SLGYGYVNF+N +D +
Sbjct: 20 ASLYVGDLERKVNEAQLYEPLYQIGHVISVRVCRDQMTQSSLGYGYVNFSNARDGSC 76
>Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991101 | 20130731
Length = 271
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 103/234 (44%), Gaps = 23/234 (9%)
Query: 11 AQEANQPMPT----SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYV 66
AQ QP +L++GDL ++++ LY F G++ SV+V R+ T QS GYG++
Sbjct: 47 AQPPQQPASADEVRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFI 106
Query: 67 NFTNPKDAATALDVLNFT--PLNGKPIRIMYSHRDPSVRKSGA-----ANIFVKNLDKSI 119
F A L N T P G+ R+ ++ R S IFV +L +
Sbjct: 107 EFNTRATAERVLQTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADV 166
Query: 120 DHKALYDTFLV-FGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKE 177
L +TF + ++ K+ D +G+SKGYGFV+F +E A+ G L +
Sbjct: 167 TDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRP 226
Query: 178 VYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVV 231
+ + K N A K EA++ L+ I +E TI V+
Sbjct: 227 MRIGPATNK----NPAA------TTQPKGCQEALSSRSLELISAEMVTILVHVL 270
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 85/170 (50%), Gaps = 5/170 (2%)
Query: 109 NIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDN 167
+++ +L +D LY F G + + K+ + + QS+GYGF++F +A+ +
Sbjct: 61 TLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQT 120
Query: 168 FNGKLI--GDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIF-SEYG 224
+NG ++ G + ++ ++ G + ++V +L+ +TD L++ F + Y
Sbjct: 121 YNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYN 180
Query: 225 TITSA-VVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYVG 273
++ A VV+ + G+SK +GFV F + E +A+ + G + +G
Sbjct: 181 SVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIG 230
>Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991094 | 20130731
Length = 271
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 103/234 (44%), Gaps = 23/234 (9%)
Query: 11 AQEANQPMPT----SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYV 66
AQ QP +L++GDL ++++ LY F G++ SV+V R+ T QS GYG++
Sbjct: 47 AQPPQQPASADEVRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFI 106
Query: 67 NFTNPKDAATALDVLNFT--PLNGKPIRIMYSHRDPSVRKSGA-----ANIFVKNLDKSI 119
F A L N T P G+ R+ ++ R S IFV +L +
Sbjct: 107 EFNTRATAERVLQTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADV 166
Query: 120 DHKALYDTFLV-FGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKE 177
L +TF + ++ K+ D +G+SKGYGFV+F +E A+ G L +
Sbjct: 167 TDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRP 226
Query: 178 VYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVV 231
+ + K N A K EA++ L+ I +E TI V+
Sbjct: 227 MRIGPATNK----NPAA------TTQPKGCQEALSSRSLELISAEMVTILVHVL 270
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 85/170 (50%), Gaps = 5/170 (2%)
Query: 109 NIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDN 167
+++ +L +D LY F G + + K+ + + QS+GYGF++F +A+ +
Sbjct: 61 TLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQT 120
Query: 168 FNGKLI--GDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIF-SEYG 224
+NG ++ G + ++ ++ G + ++V +L+ +TD L++ F + Y
Sbjct: 121 YNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYN 180
Query: 225 TITSA-VVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYVG 273
++ A VV+ + G+SK +GFV F + E +A+ + G + +G
Sbjct: 181 SVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIG 230
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 12/168 (7%)
Query: 107 AANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAI 165
A ++V NL S+ L D F G +++ +I D + +S+G+ FV ++ E A+ AI
Sbjct: 108 AGRLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAI 167
Query: 166 DNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFNN----------VYVKNLSEAMTDDD 215
F+G +G + V+ + + E +G N+ +Y NL M D
Sbjct: 168 RMFDGSQVGGRSAKVNFPEVPKGGERLVMGQKVRNSYRGFVDSPHKIYAGNLGWGMNSQD 227
Query: 216 LKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNG 262
L+ F E + A ++ + D G+S+ FGFV FE A+ A++A+NG
Sbjct: 228 LRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNAMNG 275
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 29/189 (15%)
Query: 7 TDAVAQEANQPMPTS-----LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSL 61
+D Q+ Q + TS LYVG+L + SQL D+F + G VVSV + D T +S
Sbjct: 91 SDKPKQDEEQKVTTSDDAGRLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSR 150
Query: 62 GYGYVNFTNPKDAATALDVLNFTPLNGKPIRIMYSHRDPSVRKSG--------------- 106
G+ +V + ++A A+ + + + + G+ ++ + P V K G
Sbjct: 151 GFAFVTMKSAEEAKEAIRMFDGSQVGGRSAKVNF----PEVPKGGERLVMGQKVRNSYRG 206
Query: 107 ----AANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESA 161
I+ NL ++ + L D F +L KI + +G+S+G+GFV FE E
Sbjct: 207 FVDSPHKIYAGNLGWGMNSQDLRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHL 266
Query: 162 QNAIDNFNG 170
+ A++ NG
Sbjct: 267 EAALNAMNG 275
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 79/173 (45%), Gaps = 7/173 (4%)
Query: 186 KQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGF 244
KQD E +YV NL +MT L IF+E GT+ S ++ D + +S+ F F
Sbjct: 95 KQDEEQKVTTSDDAGRLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAF 154
Query: 245 VNFENADEAAKAVDALNGKKFDDKEWYVGXXXXXXXXXXXXXXQH-EQSMQETVDKYQGA 303
V ++A+EA +A+ +G + + V Q S + VD
Sbjct: 155 VTMKSAEEAKEAIRMFDGSQVGGRSAKVNFPEVPKGGERLVMGQKVRNSYRGFVDSPH-- 212
Query: 304 NLYLKNLDDNVDDEKLRELFSEFGTITSCKIM--RDPHGVSRGSGFVAFSTPE 354
+Y NL ++ + LR+ F E + KI+ RD +G SRG GFV F T E
Sbjct: 213 KIYAGNLGWGMNSQDLRDAFDEQPGLLGAKIIYERD-NGRSRGFGFVTFETAE 264
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 14/172 (8%)
Query: 12 QEANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNP 71
QEA L+VG+L ++ SQL LF + G VVSV + D T +S G+ +V N
Sbjct: 100 QEAESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNV 159
Query: 72 KDAATALDVLNFTPLNGKPIRIMYSHRDPSVRKS------------GAANIFVKNLDKSI 119
+DA A+ + + T + G+ I++ + P V K I+ NL +
Sbjct: 160 EDAEEAIRMFDGTTVGGRAIKVNFPEV-PIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDM 218
Query: 120 DHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDNFNG 170
+ L F +L+ K+ + +G+S+GYGFV FE E + A+ NG
Sbjct: 219 TSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNG 270
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 84/161 (52%), Gaps = 8/161 (4%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNF 168
+FV NL S+ L F GN+++ +I D + +S+G+ FV N E A+ AI F
Sbjct: 110 LFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMF 169
Query: 169 NGKLIGDKEVYVSHFQRKQDRENAALGGG------KFNNVYVKNLSEAMTDDDLKKIFS- 221
+G +G + + V+ + + +G + +Y NL MT L+K F+
Sbjct: 170 DGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRKAFAK 229
Query: 222 EYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNG 262
+ G +++ VV +GKS+ +GFV+FE A++ A+ A+NG
Sbjct: 230 QPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNG 270
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 11/162 (6%)
Query: 202 VYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVDAL 260
++V NL +++ L ++F E G + S ++ D + +S+ F FV N ++A +A+
Sbjct: 110 LFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMF 169
Query: 261 NGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKY--QGANLYLKNLDDNVDDEK 318
+G VG M T Y +Y NL ++ +
Sbjct: 170 DGTT-------VGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQY 222
Query: 319 LRELFSEFGTITSCKIMRDPH-GVSRGSGFVAFSTPEEATRA 359
LR+ F++ + S K++ + + G SRG GFV+F T E+ A
Sbjct: 223 LRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVA 264
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 14/172 (8%)
Query: 12 QEANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNP 71
QEA L+VG+L ++ SQL LF + G VVSV + D T +S G+ +V N
Sbjct: 100 QEAESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNV 159
Query: 72 KDAATALDVLNFTPLNGKPIRIMYSHRDPSVRKS------------GAANIFVKNLDKSI 119
+DA A+ + + T + G+ I++ + P V K I+ NL +
Sbjct: 160 EDAEEAIRMFDGTTVGGRAIKVNFPEV-PIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDM 218
Query: 120 DHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDNFNG 170
+ L F +L+ K+ + +G+S+GYGFV FE E + A+ NG
Sbjct: 219 TSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNG 270
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 84/161 (52%), Gaps = 8/161 (4%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNF 168
+FV NL S+ L F GN+++ +I D + +S+G+ FV N E A+ AI F
Sbjct: 110 LFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMF 169
Query: 169 NGKLIGDKEVYVSHFQRKQDRENAALGGG------KFNNVYVKNLSEAMTDDDLKKIFS- 221
+G +G + + V+ + + +G + +Y NL MT L+K F+
Sbjct: 170 DGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRKAFAK 229
Query: 222 EYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNG 262
+ G +++ VV +GKS+ +GFV+FE A++ A+ A+NG
Sbjct: 230 QPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNG 270
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 11/162 (6%)
Query: 202 VYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVDAL 260
++V NL +++ L ++F E G + S ++ D + +S+ F FV N ++A +A+
Sbjct: 110 LFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMF 169
Query: 261 NGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKY--QGANLYLKNLDDNVDDEK 318
+G VG M T Y +Y NL ++ +
Sbjct: 170 DGTT-------VGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQY 222
Query: 319 LRELFSEFGTITSCKIMRDPH-GVSRGSGFVAFSTPEEATRA 359
LR+ F++ + S K++ + + G SRG GFV+F T E+ A
Sbjct: 223 LRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVA 264
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 12/170 (7%)
Query: 108 ANIFVKNLDKSIDHKALYDTFLVFGNILTCKIA----TDGSGQSKGYGFVQFENEESAQN 163
A +FV N +D + L ++FG T +IA + S+G+GFV E A++
Sbjct: 109 AKLFVGNFPFDVDSEKLA---MLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAES 165
Query: 164 AIDNFNGKLIGDKEVYVSHFQRKQDR----ENAALGGGKFNNVYVKNLSEAMTDDDLKKI 219
A++ FNG + + V+ K R E A +YV NL+ + + L+++
Sbjct: 166 AVEKFNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQV 225
Query: 220 FSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKFDDK 268
FSE+G I SA V+ D + G+S+ FGFV + E A+ AL+G+ + +
Sbjct: 226 FSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGR 275
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 22/189 (11%)
Query: 17 PMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAAT 76
P L+VG+ +++ +L LF Q G V V + T S G+G+V + ++A +
Sbjct: 106 PEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAES 165
Query: 77 ALDVLN-------------FTPLNGKPIRIMYSHR--DPSVRKSGAANIFVKNLDKSIDH 121
A++ N +P +P R + R +P +R I+V NL +D+
Sbjct: 166 AVEKFNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVLR------IYVANLAWEVDN 219
Query: 122 KALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYV 180
L F G I++ ++ D +G+S+G+GFV +E +AI +G+ + + + V
Sbjct: 220 SRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRV 279
Query: 181 SHFQRKQDR 189
S + + R
Sbjct: 280 SVAEDRPRR 288
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 11/153 (7%)
Query: 202 VYVKNLSEAMTDDDLKKIFSEYGTITSAVVM--RDVDGKSKCFGFVNFENADEAAKAVDA 259
++V N + + L +F + GT+ A V+ R D S+ FGFV +EA AV+
Sbjct: 111 LFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTD-LSRGFGFVTMSTVEEAESAVEK 169
Query: 260 LNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKL 319
NG ++ + V + E++ + +Y+ NL VD+ +L
Sbjct: 170 FNGYDYNGRSLVVNKASPKGS-------RPERTERAPRTFEPVLRIYVANLAWEVDNSRL 222
Query: 320 RELFSEFGTITSCKIMRDPH-GVSRGSGFVAFS 351
++FSE G I S +++ D G SRG GFV S
Sbjct: 223 EQVFSEHGKIVSARVVYDRETGRSRGFGFVTMS 255
>Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7990818 | 20130731
Length = 284
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 86/183 (46%), Gaps = 13/183 (7%)
Query: 11 AQEANQPMPT----SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYV 66
AQ QP +L++GDL ++++ LY F G++ SV+V R+ T QS GYG++
Sbjct: 47 AQPPQQPASADEVRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFI 106
Query: 67 NFTNPKDAATALDVLNFT--PLNGKPIRIMYSHRDPSVRKSGA-----ANIFVKNLDKSI 119
F A L N T P G+ R+ ++ R S IFV +L +
Sbjct: 107 EFNTRATAERVLQTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADV 166
Query: 120 DHKALYDTFLV-FGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKE 177
L +TF + ++ K+ D +G+SKGYGFV+F +E A+ G L +
Sbjct: 167 TDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRP 226
Query: 178 VYV 180
+ +
Sbjct: 227 MRI 229
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 85/170 (50%), Gaps = 5/170 (2%)
Query: 109 NIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDN 167
+++ +L +D LY F G + + K+ + + QS+GYGF++F +A+ +
Sbjct: 61 TLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQT 120
Query: 168 FNGKLI--GDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIF-SEYG 224
+NG ++ G + ++ ++ G + ++V +L+ +TD L++ F + Y
Sbjct: 121 YNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYN 180
Query: 225 TITSA-VVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYVG 273
++ A VV+ + G+SK +GFV F + E +A+ + G + +G
Sbjct: 181 SVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIG 230
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 112/253 (44%), Gaps = 22/253 (8%)
Query: 14 ANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKD 73
+ P + +++G L + +D + +L +G +V +++ +D T +S GY +V + +
Sbjct: 98 SRPPHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEV 157
Query: 74 AATALDVLNFTPLNGKPIRIMYS---HRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLV 130
A A+D ++ GK +R + S HR +F+ N+ K+
Sbjct: 158 AQKAIDDIHNKEFKGKTLRCLLSETKHR-----------LFIGNIPKTWTEDEFRKAVEG 206
Query: 131 FG-NILTCKIATDGSGQS--KGYGFVQFENEESA---QNAIDNFNGKLIGDKEVYVSHFQ 184
G + + + D QS +G+ FV + N A + + + KL G
Sbjct: 207 VGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPTVTWADP 266
Query: 185 RKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGF 244
+ ++AA + +YVKN+ E +T + LK++F +G +T V+ + FGF
Sbjct: 267 KTSPDQSAA--ASQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRDFGF 324
Query: 245 VNFENADEAAKAV 257
+++ A KAV
Sbjct: 325 IHYAERSSALKAV 337
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 117/266 (43%), Gaps = 37/266 (13%)
Query: 103 RKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESA 161
R + +F+ L + + + G+I+ K+ D +G+SKGY FV ++ +E A
Sbjct: 99 RPPHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVA 158
Query: 162 QNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFS 221
Q AID+ + K K + + K + +++ N+ + T+D+ +K
Sbjct: 159 QKAIDDIHNKEFKGKTLRCLLSETK-------------HRLFIGNIPKTWTEDEFRKAVE 205
Query: 222 EYGT-ITSAVVMRDVDGKSK--CFGFVNFEN---ADEAAKAVDALNGKKFDDKEWYVGXX 275
G + S +++D +S+ F FV + N AD + + + ++ G K D
Sbjct: 206 GVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSV-GFKLD--------- 255
Query: 276 XXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLRELFSEFGTITSCKIM 335
+ S ++ Q LY+KN+ +NV E+L+ELF G +T K++
Sbjct: 256 ---GITPTVTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQLKELFRRHGEVT--KVV 310
Query: 336 RDPHGVS--RGSGFVAFSTPEEATRA 359
P S R GF+ ++ A +A
Sbjct: 311 MPPGKASGKRDFGFIHYAERSSALKA 336
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 112/253 (44%), Gaps = 22/253 (8%)
Query: 14 ANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKD 73
+ P + +++G L + +D + +L +G +V +++ +D T +S GY +V + +
Sbjct: 98 SRPPHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEV 157
Query: 74 AATALDVLNFTPLNGKPIRIMYS---HRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLV 130
A A+D ++ GK +R + S HR +F+ N+ K+
Sbjct: 158 AQKAIDDIHNKEFKGKTLRCLLSETKHR-----------LFIGNIPKTWTEDEFRKAVEG 206
Query: 131 FG-NILTCKIATDGSGQS--KGYGFVQFENEESA---QNAIDNFNGKLIGDKEVYVSHFQ 184
G + + + D QS +G+ FV + N A + + + KL G
Sbjct: 207 VGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPTVTWADP 266
Query: 185 RKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGF 244
+ ++AA + +YVKN+ E +T + LK++F +G +T V+ + FGF
Sbjct: 267 KTSPDQSAA--ASQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRDFGF 324
Query: 245 VNFENADEAAKAV 257
+++ A KAV
Sbjct: 325 IHYAERSSALKAV 337
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 117/266 (43%), Gaps = 37/266 (13%)
Query: 103 RKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESA 161
R + +F+ L + + + G+I+ K+ D +G+SKGY FV ++ +E A
Sbjct: 99 RPPHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVA 158
Query: 162 QNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFS 221
Q AID+ + K K + + K + +++ N+ + T+D+ +K
Sbjct: 159 QKAIDDIHNKEFKGKTLRCLLSETK-------------HRLFIGNIPKTWTEDEFRKAVE 205
Query: 222 EYGT-ITSAVVMRDVDGKSK--CFGFVNFEN---ADEAAKAVDALNGKKFDDKEWYVGXX 275
G + S +++D +S+ F FV + N AD + + + ++ G K D
Sbjct: 206 GVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSV-GFKLD--------- 255
Query: 276 XXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLRELFSEFGTITSCKIM 335
+ S ++ Q LY+KN+ +NV E+L+ELF G +T K++
Sbjct: 256 ---GITPTVTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQLKELFRRHGEVT--KVV 310
Query: 336 RDPHGVS--RGSGFVAFSTPEEATRA 359
P S R GF+ ++ A +A
Sbjct: 311 MPPGKASGKRDFGFIHYAERSSALKA 336
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 112/253 (44%), Gaps = 22/253 (8%)
Query: 14 ANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKD 73
+ P + +++G L + +D + +L +G +V +++ +D T +S GY +V + +
Sbjct: 98 SRPPHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEV 157
Query: 74 AATALDVLNFTPLNGKPIRIMYS---HRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLV 130
A A+D ++ GK +R + S HR +F+ N+ K+
Sbjct: 158 AQKAIDDIHNKEFKGKTLRCLLSETKHR-----------LFIGNIPKTWTEDEFRKAVEG 206
Query: 131 FG-NILTCKIATDGSGQS--KGYGFVQFENEESA---QNAIDNFNGKLIGDKEVYVSHFQ 184
G + + + D QS +G+ FV + N A + + + KL G
Sbjct: 207 VGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPTVTWADP 266
Query: 185 RKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGF 244
+ ++AA + +YVKN+ E +T + LK++F +G +T V+ + FGF
Sbjct: 267 KTSPDQSAA--ASQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRDFGF 324
Query: 245 VNFENADEAAKAV 257
+++ A KAV
Sbjct: 325 IHYAERSSALKAV 337
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 117/266 (43%), Gaps = 37/266 (13%)
Query: 103 RKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESA 161
R + +F+ L + + + G+I+ K+ D +G+SKGY FV ++ +E A
Sbjct: 99 RPPHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVA 158
Query: 162 QNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFS 221
Q AID+ + K K + + K + +++ N+ + T+D+ +K
Sbjct: 159 QKAIDDIHNKEFKGKTLRCLLSETK-------------HRLFIGNIPKTWTEDEFRKAVE 205
Query: 222 EYGT-ITSAVVMRDVDGKSK--CFGFVNFEN---ADEAAKAVDALNGKKFDDKEWYVGXX 275
G + S +++D +S+ F FV + N AD + + + ++ G K D
Sbjct: 206 GVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSV-GFKLD--------- 255
Query: 276 XXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLRELFSEFGTITSCKIM 335
+ S ++ Q LY+KN+ +NV E+L+ELF G +T K++
Sbjct: 256 ---GITPTVTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQLKELFRRHGEVT--KVV 310
Query: 336 RDPHGVS--RGSGFVAFSTPEEATRA 359
P S R GF+ ++ A +A
Sbjct: 311 MPPGKASGKRDFGFIHYAERSSALKA 336
>Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 28/251 (11%)
Query: 17 PMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAAT 76
P + +Y+G + E ++ L +G+V VRV + +++ GY +V F + A+
Sbjct: 98 PHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEVRV---MKGKEAKGYAFVTFKTKELASK 154
Query: 77 ALDVLNFTPLNGKPIRIMYS---HRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFG- 132
AL LN + G+ I+ S HR +F+ ++ K + + G
Sbjct: 155 ALKELNNSEFKGRKIKCSPSQVKHR-----------LFIGSVPKEWTVEDMKKVVAKVGP 203
Query: 133 NILTCKIATD--GSGQSKGYGFVQFENE---ESAQNAIDNFNGKLIGDKEVYVSHFQRKQ 187
+++ ++ D S +++G+ F+++ N E ++ + N N KL + +
Sbjct: 204 GVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAI----VSWAD 259
Query: 188 DRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKC-FGFVN 246
R + + + VYVKNL E +T + LK++F +G IT + G+ K +GFV+
Sbjct: 260 PRNSESSSSSQVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVH 319
Query: 247 FENADEAAKAV 257
F + A KA+
Sbjct: 320 FADRSSAMKAL 330
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 93/220 (42%), Gaps = 33/220 (15%)
Query: 146 QSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVK 205
++KGY FV F+ +E A A+ N +++ S Q K + +++
Sbjct: 137 EAKGYAFVTFKTKELASKALKELNNSEFKGRKIKCSPSQVK-------------HRLFIG 183
Query: 206 NLSEAMTDDDLKKIFSEYGT-ITSAVVMRDVDGKSK--CFGFVNFENADEAAKAVDALNG 262
++ + T +D+KK+ ++ G + S +++D S+ F F+ + N A + ++
Sbjct: 184 SVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSN 243
Query: 263 K--KFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLR 320
K D+ + V + E+ Q +Y+KNL +N+ +L+
Sbjct: 244 SNFKLDNNDAIVSWA--------------DPRNSESSSSSQVKAVYVKNLPENITQNRLK 289
Query: 321 ELFSEFGTITSCKIMRDPHGVSRGS-GFVAFSTPEEATRA 359
ELF G IT + G + GFV F+ A +A
Sbjct: 290 ELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKA 329
>Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 28/251 (11%)
Query: 17 PMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAAT 76
P + +Y+G + E ++ L +G+V VRV + +++ GY +V F + A+
Sbjct: 98 PHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEVRV---MKGKEAKGYAFVTFKTKELASK 154
Query: 77 ALDVLNFTPLNGKPIRIMYS---HRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFG- 132
AL LN + G+ I+ S HR +F+ ++ K + + G
Sbjct: 155 ALKELNNSEFKGRKIKCSPSQVKHR-----------LFIGSVPKEWTVEDMKKVVAKVGP 203
Query: 133 NILTCKIATD--GSGQSKGYGFVQFENE---ESAQNAIDNFNGKLIGDKEVYVSHFQRKQ 187
+++ ++ D S +++G+ F+++ N E ++ + N N KL + +
Sbjct: 204 GVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAI----VSWAD 259
Query: 188 DRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKC-FGFVN 246
R + + + VYVKNL E +T + LK++F +G IT + G+ K +GFV+
Sbjct: 260 PRNSESSSSSQVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVH 319
Query: 247 FENADEAAKAV 257
F + A KA+
Sbjct: 320 FADRSSAMKAL 330
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 93/220 (42%), Gaps = 33/220 (15%)
Query: 146 QSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVK 205
++KGY FV F+ +E A A+ N +++ S Q K + +++
Sbjct: 137 EAKGYAFVTFKTKELASKALKELNNSEFKGRKIKCSPSQVK-------------HRLFIG 183
Query: 206 NLSEAMTDDDLKKIFSEYGT-ITSAVVMRDVDGKSK--CFGFVNFENADEAAKAVDALNG 262
++ + T +D+KK+ ++ G + S +++D S+ F F+ + N A + ++
Sbjct: 184 SVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSN 243
Query: 263 K--KFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLR 320
K D+ + V + E+ Q +Y+KNL +N+ +L+
Sbjct: 244 SNFKLDNNDAIVSWA--------------DPRNSESSSSSQVKAVYVKNLPENITQNRLK 289
Query: 321 ELFSEFGTITSCKIMRDPHGVSRGS-GFVAFSTPEEATRA 359
ELF G IT + G + GFV F+ A +A
Sbjct: 290 ELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKA 329
>Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42488464-42483010 | 20130731
Length = 477
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 28/251 (11%)
Query: 17 PMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAAT 76
P + +Y+G + E ++ L +G+V VRV + +++ GY +V F + A+
Sbjct: 98 PHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEVRV---MKGKEAKGYAFVTFKTKELASK 154
Query: 77 ALDVLNFTPLNGKPIRIMYS---HRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFG- 132
AL LN + G+ I+ S HR +F+ ++ K + + G
Sbjct: 155 ALKELNNSEFKGRKIKCSPSQVKHR-----------LFIGSVPKEWTVEDMKKVVAKVGP 203
Query: 133 NILTCKIATD--GSGQSKGYGFVQFENE---ESAQNAIDNFNGKLIGDKEVYVSHFQRKQ 187
+++ ++ D S +++G+ F+++ N E ++ + N N KL + +
Sbjct: 204 GVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAI----VSWAD 259
Query: 188 DRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKC-FGFVN 246
R + + + VYVKNL E +T + LK++F +G IT + G+ K +GFV+
Sbjct: 260 PRNSESSSSSQVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVH 319
Query: 247 FENADEAAKAV 257
F + A KA+
Sbjct: 320 FADRSSAMKAL 330
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 93/220 (42%), Gaps = 33/220 (15%)
Query: 146 QSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVK 205
++KGY FV F+ +E A A+ N +++ S Q K + +++
Sbjct: 137 EAKGYAFVTFKTKELASKALKELNNSEFKGRKIKCSPSQVK-------------HRLFIG 183
Query: 206 NLSEAMTDDDLKKIFSEYGT-ITSAVVMRDVDGKSK--CFGFVNFENADEAAKAVDALNG 262
++ + T +D+KK+ ++ G + S +++D S+ F F+ + N A + ++
Sbjct: 184 SVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSN 243
Query: 263 K--KFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLR 320
K D+ + V + E+ Q +Y+KNL +N+ +L+
Sbjct: 244 SNFKLDNNDAIVSWA--------------DPRNSESSSSSQVKAVYVKNLPENITQNRLK 289
Query: 321 ELFSEFGTITSCKIMRDPHGVSRGS-GFVAFSTPEEATRA 359
ELF G IT + G + GFV F+ A +A
Sbjct: 290 ELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKA 329
>Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 28/251 (11%)
Query: 17 PMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAAT 76
P + +Y+G + E ++ L +G+V VRV + +++ GY +V F + A+
Sbjct: 98 PHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEVRV---MKGKEAKGYAFVTFKTKELASK 154
Query: 77 ALDVLNFTPLNGKPIRIMYS---HRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFG- 132
AL LN + G+ I+ S HR +F+ ++ K + + G
Sbjct: 155 ALKELNNSEFKGRKIKCSPSQVKHR-----------LFIGSVPKEWTVEDMKKVVAKVGP 203
Query: 133 NILTCKIATD--GSGQSKGYGFVQFENE---ESAQNAIDNFNGKLIGDKEVYVSHFQRKQ 187
+++ ++ D S +++G+ F+++ N E ++ + N N KL + +
Sbjct: 204 GVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAI----VSWAD 259
Query: 188 DRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKC-FGFVN 246
R + + + VYVKNL E +T + LK++F +G IT + G+ K +GFV+
Sbjct: 260 PRNSESSSSSQVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVH 319
Query: 247 FENADEAAKAV 257
F + A KA+
Sbjct: 320 FADRSSAMKAL 330
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 93/220 (42%), Gaps = 33/220 (15%)
Query: 146 QSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVK 205
++KGY FV F+ +E A A+ N +++ S Q K + +++
Sbjct: 137 EAKGYAFVTFKTKELASKALKELNNSEFKGRKIKCSPSQVK-------------HRLFIG 183
Query: 206 NLSEAMTDDDLKKIFSEYGT-ITSAVVMRDVDGKSK--CFGFVNFENADEAAKAVDALNG 262
++ + T +D+KK+ ++ G + S +++D S+ F F+ + N A + ++
Sbjct: 184 SVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSN 243
Query: 263 K--KFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLR 320
K D+ + V + E+ Q +Y+KNL +N+ +L+
Sbjct: 244 SNFKLDNNDAIVSWA--------------DPRNSESSSSSQVKAVYVKNLPENITQNRLK 289
Query: 321 ELFSEFGTITSCKIMRDPHGVSRGS-GFVAFSTPEEATRA 359
ELF G IT + G + GFV F+ A +A
Sbjct: 290 ELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKA 329
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 9/173 (5%)
Query: 190 ENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFE 248
E A + +YV N+ +++D+L+KI E+G + A VM D +S+ F FV +
Sbjct: 50 EQATVDSPALRKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMK 109
Query: 249 NADEAAKAVDALNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLK 308
++A A + LNG + +E V E + ++ K +Y+
Sbjct: 110 TVEDANAAAEKLNGTEIGGREIKVNITEKPLTTEGLPVQAGESTFVDSPYK-----VYVG 164
Query: 309 NLDDNVDDEKLRELFSEFGTITSCKIMRDPHGVSRGS--GFVAFSTPEEATRA 359
NL NV + L++ FSE G S K+ R P G S+ S GFV FS+ E+ A
Sbjct: 165 NLAKNVTSDSLKKFFSEKGNALSAKVSRAP-GTSKSSGFGFVTFSSDEDVEAA 216
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 89/176 (50%), Gaps = 12/176 (6%)
Query: 17 PMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAAT 76
P LYVG++ +++ +L + + G V V D +++S + +V +DA
Sbjct: 57 PALRKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANA 116
Query: 77 ALDVLNFTPLNGKPIRIMYSHRDPSVR----KSGAAN-------IFVKNLDKSIDHKALY 125
A + LN T + G+ I++ + + + ++G + ++V NL K++ +L
Sbjct: 117 AAEKLNGTEIGGREIKVNITEKPLTTEGLPVQAGESTFVDSPYKVYVGNLAKNVTSDSLK 176
Query: 126 DTFLVFGNILTCKIA-TDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYV 180
F GN L+ K++ G+ +S G+GFV F ++E + AI +FN L+ +++ V
Sbjct: 177 KFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKIRV 232
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 13/182 (7%)
Query: 99 DPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFEN 157
P++RK ++V N+ +++ + L G + ++ D S +S+ + FV +
Sbjct: 56 SPALRK-----LYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKT 110
Query: 158 EESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFN------NVYVKNLSEAM 211
E A A + NG IG +E+ V+ ++ E + G+ VYV NL++ +
Sbjct: 111 VEDANAAAEKLNGTEIGGREIKVNITEKPLTTEGLPVQAGESTFVDSPYKVYVGNLAKNV 170
Query: 212 TDDDLKKIFSEYGTITSAVVMRDV-DGKSKCFGFVNFENADEAAKAVDALNGKKFDDKEW 270
T D LKK FSE G SA V R KS FGFV F + ++ A+ + N + ++
Sbjct: 171 TSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKI 230
Query: 271 YV 272
V
Sbjct: 231 RV 232
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 108 ANIFVKNLDKSIDHKALYDTFLVFGNILTCKIA----TDGSGQSKGYGFVQFENEESAQN 163
A +FV N +D + L ++FG T +IA + S+G+GFV E A++
Sbjct: 109 AKLFVGNFPFDVDSEKLA---MLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAES 165
Query: 164 AIDNFNGKLIGDKEVYVSHFQRKQDR----ENAALGGGKFNNVYVKNLSEAMTDDDLKKI 219
A++ FNG + + V+ K R E A +YV NL+ + + L+++
Sbjct: 166 AVEKFNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQV 225
Query: 220 FSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGK 263
FSE+G I SA V+ D + G+S+ FGFV + E A+ AL+G+
Sbjct: 226 FSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQ 270
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 22/172 (12%)
Query: 17 PMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAAT 76
P L+VG+ +++ +L LF Q G V V + T S G+G+V + ++A +
Sbjct: 106 PEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAES 165
Query: 77 ALDVLN-------------FTPLNGKPIRIMYSHR--DPSVRKSGAANIFVKNLDKSIDH 121
A++ N +P +P R + R +P +R I+V NL +D+
Sbjct: 166 AVEKFNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVLR------IYVANLAWEVDN 219
Query: 122 KALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFNGKL 172
L F G I++ ++ D +G+S+G+GFV +E +AI +G++
Sbjct: 220 SRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQV 271
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 11/153 (7%)
Query: 202 VYVKNLSEAMTDDDLKKIFSEYGTITSAVVM--RDVDGKSKCFGFVNFENADEAAKAVDA 259
++V N + + L +F + GT+ A V+ R D S+ FGFV +EA AV+
Sbjct: 111 LFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTD-LSRGFGFVTMSTVEEAESAVEK 169
Query: 260 LNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKL 319
NG ++ + V + E++ + +Y+ NL VD+ +L
Sbjct: 170 FNGYDYNGRSLVVNKASPKGS-------RPERTERAPRTFEPVLRIYVANLAWEVDNSRL 222
Query: 320 RELFSEFGTITSCKIMRDPH-GVSRGSGFVAFS 351
++FSE G I S +++ D G SRG GFV S
Sbjct: 223 EQVFSEHGKIVSARVVYDRETGRSRGFGFVTMS 255
>Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr7:2533493-2542856 | 20130731
Length = 752
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 109/244 (44%), Gaps = 17/244 (6%)
Query: 20 TSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
+ +YVG + + L + IG+VV VR+ + ++ G+ +V + + + A+ A+
Sbjct: 350 SEVYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASENRGFAFVTYRSIELASKAIK 409
Query: 80 VLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTC-K 138
LN T I+ S + +F+ N+ +S K L G +T +
Sbjct: 410 ELNNTEFKAGKIKCSKSQ--------AKSRLFIGNIPRSWGEKDLKKVVSDIGPGVTAVE 461
Query: 139 IATDGSGQS--KGYGFVQFENEESAQNAIDNFNGK--LIGDKEVYVSHFQRKQDRENAAL 194
+ D S +GY F+ + N + A+ + +GD V+ + K +A+
Sbjct: 462 LIKDMKNISNNRGYAFIDYHNNQCAEYSRQKMTSPSFKLGDNFPTVNWAEPKNADSSAS- 520
Query: 195 GGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKC-FGFVNFENADEA 253
+ VYVKNL + +T + LKK+F +G IT V+ G+ K GFV+F A
Sbjct: 521 --SQVKEVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKNRIGFVHFAERSNA 578
Query: 254 AKAV 257
KA+
Sbjct: 579 MKAL 582
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 97/242 (40%), Gaps = 44/242 (18%)
Query: 130 VFGNILTCKI--ATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQ 187
G ++ +I D S +++G+ FV + + E A AI N ++ S Q K
Sbjct: 372 CIGEVVQVRIFKGKDAS-ENRGFAFVTYRSIELASKAIKELNNTEFKAGKIKCSKSQAK- 429
Query: 188 DRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGT-ITSAVVMRDVDGKS--KCFGF 244
+ +++ N+ + + DLKK+ S+ G +T+ +++D+ S + + F
Sbjct: 430 ------------SRLFIGNIPRSWGEKDLKKVVSDIGPGVTAVELIKDMKNISNNRGYAF 477
Query: 245 VNFENADEAAKAVDALN------GKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVD 298
+++ N A + + G F W E ++
Sbjct: 478 IDYHNNQCAEYSRQKMTSPSFKLGDNFPTVNWA------------------EPKNADSSA 519
Query: 299 KYQGANLYLKNLDDNVDDEKLRELFSEFGTITSCKIMRDPHGVSRGS-GFVAFSTPEEAT 357
Q +Y+KNL NV E+L++LF G IT + G + GFV F+ A
Sbjct: 520 SSQVKEVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKNRIGFVHFAERSNAM 579
Query: 358 RA 359
+A
Sbjct: 580 KA 581
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 21/184 (11%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGS-GQSKGYGFVQFENEESAQNAIDNF 168
+FV NL S+D L + F G++ ++ D S G+S+G+GFV + + A
Sbjct: 86 LFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQL 145
Query: 169 NGKLIGDKEVYVSHFQRKQDR-------ENAALGGGKF------------NNVYVKNLSE 209
NG ++ +E+ V+ R EN GG + N V+V NL+
Sbjct: 146 NGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLAW 205
Query: 210 AMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKFDDK 268
+ + L+ +F E G + A V+ D + G+S+ FGFV F +ADE A+ L+G + +
Sbjct: 206 GVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNGR 265
Query: 269 EWYV 272
V
Sbjct: 266 AIRV 269
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 21/184 (11%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGS-GQSKGYGFVQFENEESAQNAIDNF 168
+FV NL S+D L + F G++ ++ D S G+S+G+GFV + + A
Sbjct: 86 LFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQL 145
Query: 169 NGKLIGDKEVYVSHFQRKQDR-------ENAALGGGKF------------NNVYVKNLSE 209
NG ++ +E+ V+ R EN GG + N V+V NL+
Sbjct: 146 NGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLAW 205
Query: 210 AMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKFDDK 268
+ + L+ +F E G + A V+ D + G+S+ FGFV F +ADE A+ L+G + +
Sbjct: 206 GVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNGR 265
Query: 269 EWYV 272
V
Sbjct: 266 AIRV 269
>Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 126/275 (45%), Gaps = 20/275 (7%)
Query: 1 MAQIHETD--AVAQEANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQ 58
MA + E + V +E + ++VG LD + + L +F+++G V VR+ + T+
Sbjct: 193 MADVDEEEHREVVKERRKRKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTK 252
Query: 59 QSLGYGYVNFTNPKDAATALDVLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKS 118
++ G+ ++ F N + A A+ L +NGK + S + +++ N+ K+
Sbjct: 253 KNKGFAFLRFENVEQAKRAVAELKNPVINGKQCGVTPSQ--------DSDTLYLGNICKT 304
Query: 119 IDHKALYDTFLVFG--NILTCKIATDGS--GQSKGYGFVQFENEESAQNAIDNFNGKLIG 174
+AL + +G N+ + D + G ++G+ F++F + A +A + +
Sbjct: 305 WTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVT 364
Query: 175 ---DKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVV 231
DK VS D + + + V++ L + +D ++ + +YG + +
Sbjct: 365 FGVDKPAKVSFADSFIDPGDEIM--SQVKTVFIDALPPSWDEDYVRNLLKKYGEVEKIEL 422
Query: 232 MRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKF 265
R++ + K +GFV F + D A + D++ G +
Sbjct: 423 ARNMPAARRKDYGFVTFGSHDAAIRCADSITGTEL 457
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 29/160 (18%)
Query: 202 VYVKNLSEAMTDDDLKKIFSEYGTITSA-VVMRDVDGKSKCFGFVNFENADEAAKAVDAL 260
V+V L + T+DDL+K+FSE G +T ++M K+K F F+ FEN ++A +AV L
Sbjct: 216 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 275
Query: 261 NGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLR 320
+ K+ V LYL N+ E L+
Sbjct: 276 KNPVINGKQCGVTPSQDSD------------------------TLYLGNICKTWTKEALK 311
Query: 321 ELFSEFGT--ITSCKIMRDPH--GVSRGSGFVAFSTPEEA 356
E +G + ++ D + G +RG F+ FS+ +A
Sbjct: 312 EKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDA 351
>Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 126/275 (45%), Gaps = 20/275 (7%)
Query: 1 MAQIHETD--AVAQEANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQ 58
MA + E + V +E + ++VG LD + + L +F+++G V VR+ + T+
Sbjct: 193 MADVDEEEHREVVKERRKRKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTK 252
Query: 59 QSLGYGYVNFTNPKDAATALDVLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKS 118
++ G+ ++ F N + A A+ L +NGK + S + +++ N+ K+
Sbjct: 253 KNKGFAFLRFENVEQAKRAVAELKNPVINGKQCGVTPSQ--------DSDTLYLGNICKT 304
Query: 119 IDHKALYDTFLVFG--NILTCKIATDGS--GQSKGYGFVQFENEESAQNAIDNFNGKLIG 174
+AL + +G N+ + D + G ++G+ F++F + A +A + +
Sbjct: 305 WTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVT 364
Query: 175 ---DKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVV 231
DK VS D + + + V++ L + +D ++ + +YG + +
Sbjct: 365 FGVDKPAKVSFADSFIDPGDEIM--SQVKTVFIDALPPSWDEDYVRNLLKKYGEVEKIEL 422
Query: 232 MRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKF 265
R++ + K +GFV F + D A + D++ G +
Sbjct: 423 ARNMPAARRKDYGFVTFGSHDAAIRCADSITGTEL 457
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 29/160 (18%)
Query: 202 VYVKNLSEAMTDDDLKKIFSEYGTITSA-VVMRDVDGKSKCFGFVNFENADEAAKAVDAL 260
V+V L + T+DDL+K+FSE G +T ++M K+K F F+ FEN ++A +AV L
Sbjct: 216 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 275
Query: 261 NGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLR 320
+ K+ V LYL N+ E L+
Sbjct: 276 KNPVINGKQCGVTPSQDSD------------------------TLYLGNICKTWTKEALK 311
Query: 321 ELFSEFGT--ITSCKIMRDPH--GVSRGSGFVAFSTPEEA 356
E +G + ++ D + G +RG F+ FS+ +A
Sbjct: 312 EKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDA 351
>Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 126/275 (45%), Gaps = 20/275 (7%)
Query: 1 MAQIHETD--AVAQEANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQ 58
MA + E + V +E + ++VG LD + + L +F+++G V VR+ + T+
Sbjct: 194 MADVDEEEHREVVKERRKRKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTK 253
Query: 59 QSLGYGYVNFTNPKDAATALDVLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKS 118
++ G+ ++ F N + A A+ L +NGK + S + +++ N+ K+
Sbjct: 254 KNKGFAFLRFENVEQAKRAVAELKNPVINGKQCGVTPSQ--------DSDTLYLGNICKT 305
Query: 119 IDHKALYDTFLVFG--NILTCKIATDGS--GQSKGYGFVQFENEESAQNAIDNFNGKLIG 174
+AL + +G N+ + D + G ++G+ F++F + A +A + +
Sbjct: 306 WTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVT 365
Query: 175 ---DKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVV 231
DK VS D + + + V++ L + +D ++ + +YG + +
Sbjct: 366 FGVDKPAKVSFADSFIDPGDEIM--SQVKTVFIDALPPSWDEDYVRNLLKKYGEVEKIEL 423
Query: 232 MRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKF 265
R++ + K +GFV F + D A + D++ G +
Sbjct: 424 ARNMPAARRKDYGFVTFGSHDAAIRCADSITGTEL 458
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 29/160 (18%)
Query: 202 VYVKNLSEAMTDDDLKKIFSEYGTITSA-VVMRDVDGKSKCFGFVNFENADEAAKAVDAL 260
V+V L + T+DDL+K+FSE G +T ++M K+K F F+ FEN ++A +AV L
Sbjct: 217 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 276
Query: 261 NGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLR 320
+ K+ V LYL N+ E L+
Sbjct: 277 KNPVINGKQCGVTPSQDSD------------------------TLYLGNICKTWTKEALK 312
Query: 321 ELFSEFGT--ITSCKIMRDPH--GVSRGSGFVAFSTPEEA 356
E +G + ++ D + G +RG F+ FS+ +A
Sbjct: 313 EKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDA 352
>Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 126/275 (45%), Gaps = 20/275 (7%)
Query: 1 MAQIHETD--AVAQEANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQ 58
MA + E + V +E + ++VG LD + + L +F+++G V VR+ + T+
Sbjct: 194 MADVDEEEHREVVKERRKRKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTK 253
Query: 59 QSLGYGYVNFTNPKDAATALDVLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKS 118
++ G+ ++ F N + A A+ L +NGK + S + +++ N+ K+
Sbjct: 254 KNKGFAFLRFENVEQAKRAVAELKNPVINGKQCGVTPSQ--------DSDTLYLGNICKT 305
Query: 119 IDHKALYDTFLVFG--NILTCKIATDGS--GQSKGYGFVQFENEESAQNAIDNFNGKLIG 174
+AL + +G N+ + D + G ++G+ F++F + A +A + +
Sbjct: 306 WTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVT 365
Query: 175 ---DKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVV 231
DK VS D + + + V++ L + +D ++ + +YG + +
Sbjct: 366 FGVDKPAKVSFADSFIDPGDEIM--SQVKTVFIDALPPSWDEDYVRNLLKKYGEVEKIEL 423
Query: 232 MRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKF 265
R++ + K +GFV F + D A + D++ G +
Sbjct: 424 ARNMPAARRKDYGFVTFGSHDAAIRCADSITGTEL 458
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 29/160 (18%)
Query: 202 VYVKNLSEAMTDDDLKKIFSEYGTITSA-VVMRDVDGKSKCFGFVNFENADEAAKAVDAL 260
V+V L + T+DDL+K+FSE G +T ++M K+K F F+ FEN ++A +AV L
Sbjct: 217 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 276
Query: 261 NGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKLR 320
+ K+ V LYL N+ E L+
Sbjct: 277 KNPVINGKQCGVTPSQDSD------------------------TLYLGNICKTWTKEALK 312
Query: 321 ELFSEFGT--ITSCKIMRDPH--GVSRGSGFVAFSTPEEA 356
E +G + ++ D + G +RG F+ FS+ +A
Sbjct: 313 EKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDA 352
>Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 115/269 (42%), Gaps = 15/269 (5%)
Query: 6 ETDAVAQEANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGY 65
E +A+A++ ++VG LD + + L +F +IG+V+ VR+ ++ +T ++ GY
Sbjct: 404 EFEAIAKQRRIRKEHEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAV 463
Query: 66 VNFTNPKDAATALDVLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALY 125
V F N + A AL + + GK S + ++ N + K K + L
Sbjct: 464 VRFANKEHAKKALSEMKNPVIRGKRCGTSPSEDNDTLFLGNICNTWTKEAVK----QKLK 519
Query: 126 DTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFN--GKLIGDKE----VY 179
D + +T G S+G+ F++F A A G + G E V
Sbjct: 520 DYGVEGVENITLVPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPGVIFGHAERTAKVA 579
Query: 180 VSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GK 238
+ R+ D E A + +V++ L +D +++ YG I V+ R + K
Sbjct: 580 FAEPIREPDPEIMA----QVKSVFINGLPLHWDEDHVREHLKSYGEIVKIVLARKMSTSK 635
Query: 239 SKCFGFVNFENADEAAKAVDALNGKKFDD 267
K GFV+F + A VD +N + D
Sbjct: 636 RKDHGFVDFSTHEAALACVDGVNKSELGD 664
>Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 115/269 (42%), Gaps = 15/269 (5%)
Query: 6 ETDAVAQEANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGY 65
E +A+A++ ++VG LD + + L +F +IG+V+ VR+ ++ +T ++ GY
Sbjct: 404 EFEAIAKQRRIRKEHEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAV 463
Query: 66 VNFTNPKDAATALDVLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALY 125
V F N + A AL + + GK S + ++ N + K K + L
Sbjct: 464 VRFANKEHAKKALSEMKNPVIRGKRCGTSPSEDNDTLFLGNICNTWTKEAVK----QKLK 519
Query: 126 DTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFN--GKLIGDKE----VY 179
D + +T G S+G+ F++F A A G + G E V
Sbjct: 520 DYGVEGVENITLVPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPGVIFGHAERTAKVA 579
Query: 180 VSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GK 238
+ R+ D E A + +V++ L +D +++ YG I V+ R + K
Sbjct: 580 FAEPIREPDPEIMA----QVKSVFINGLPLHWDEDHVREHLKSYGEIVKIVLARKMSTSK 635
Query: 239 SKCFGFVNFENADEAAKAVDALNGKKFDD 267
K GFV+F + A VD +N + D
Sbjct: 636 RKDHGFVDFSTHEAALACVDGVNKSELGD 664
>Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 989
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 115/269 (42%), Gaps = 15/269 (5%)
Query: 6 ETDAVAQEANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGY 65
E +A+A++ ++VG LD + + L +F +IG+V+ VR+ ++ +T ++ GY
Sbjct: 404 EFEAIAKQRRIRKEHEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAV 463
Query: 66 VNFTNPKDAATALDVLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALY 125
V F N + A AL + + GK S + ++ N + K K + L
Sbjct: 464 VRFANKEHAKKALSEMKNPVIRGKRCGTSPSEDNDTLFLGNICNTWTKEAVK----QKLK 519
Query: 126 DTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFN--GKLIGDKE----VY 179
D + +T G S+G+ F++F A A G + G E V
Sbjct: 520 DYGVEGVENITLVPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPGVIFGHAERTAKVA 579
Query: 180 VSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GK 238
+ R+ D E A + +V++ L +D +++ YG I V+ R + K
Sbjct: 580 FAEPIREPDPEIMA----QVKSVFINGLPLHWDEDHVREHLKSYGEIVKIVLARKMSTSK 635
Query: 239 SKCFGFVNFENADEAAKAVDALNGKKFDD 267
K GFV+F + A VD +N + D
Sbjct: 636 RKDHGFVDFSTHEAALACVDGVNKSELGD 664
>Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 300
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 8/168 (4%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
+L+VGDL ++++ L+ F G++ S++V R+ T Q+ GYG+V FT+ A L
Sbjct: 94 TLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQT 153
Query: 81 LN--FTPLNGKPIRIMYSHRDPSVRKSG----AANIFVKNLDKSIDHKALYDTFL-VFGN 133
P +P R+ ++ K +IFV +L + L +TF + +
Sbjct: 154 YAGMLMPNTEQPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLLETFSDKYPS 213
Query: 134 ILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYV 180
+ K+ D +G+SKGYGFV+F ++ A++ NG + + +
Sbjct: 214 VKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRI 261
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 93/181 (51%), Gaps = 18/181 (9%)
Query: 95 YSHRDPSVRKSGAA----NIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKG 149
Y H P V +A ++V +L +D L+ F G I + K+ + + Q++G
Sbjct: 76 YLHHVPHVHHGSSAADNKTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEG 135
Query: 150 YGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFN------NVY 203
YGFV+F + +A+ + + G L+ + E + + + G K + +++
Sbjct: 136 YGFVEFTSHGTAEKVLQTYAGMLMPNTEQPF-----RLNWATFSTGDHKRSDNVPDLSIF 190
Query: 204 VKNLSEAMTDDDLKKIFSE-YGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALN 261
V +L+ +TD L + FS+ Y ++ +A V+ D + G+SK +GFV F + E +KA++ +N
Sbjct: 191 VGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMN 250
Query: 262 G 262
G
Sbjct: 251 G 251
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 86/165 (52%), Gaps = 9/165 (5%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNF 168
IFV NL +D + L F G + ++ + + +S+G+GFV E + A++ F
Sbjct: 124 IFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNKF 183
Query: 169 NGKLIGDKEVYVSHFQRKQDRENAALGGGK-FNN---VYVKNLSEAMTDDDLKKIFSEYG 224
+G + + + V+ + R L + FN+ YV NL + + L+++FSE+G
Sbjct: 184 SGFELDGRLLTVN---KAAPRGTPRLRQPRTFNSGLRAYVGNLPWDVDNSSLEQLFSEHG 240
Query: 225 TITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKFDDK 268
+ SA V+ D + G+S+ FGFV N E A+ AL+G+ F+ +
Sbjct: 241 KVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGR 285
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 85/176 (48%), Gaps = 9/176 (5%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
++VG+L +++ +L LF Q G V V + T +S G+G+V + ++ A++
Sbjct: 124 IFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNKF 183
Query: 82 NFTPLNGKPIRIMYSH-------RDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNI 134
+ L+G+ + + + R P SG +V NL +D+ +L F G +
Sbjct: 184 SGFELDGRLLTVNKAAPRGTPRLRQPRTFNSG-LRAYVGNLPWDVDNSSLEQLFSEHGKV 242
Query: 135 LTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDR 189
+ ++ D +G+S+G+GFV NE +AI +G+ + + V+ + + R
Sbjct: 243 ESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRVNVAEERPRR 298
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 14/157 (8%)
Query: 202 VYVKNLSEAMTDDDLKKIFSEYGTITSAVVM--RDVDGKSKCFGFVNFENADEAAKAVDA 259
++V NL + + L ++F + GT+ A V+ RD D +S+ FGFV ++E +AV+
Sbjct: 124 IFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTD-RSRGFGFVTMSTSEEVERAVNK 182
Query: 260 LNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEKL 319
+G + D + V + +++ G Y+ NL +VD+ L
Sbjct: 183 FSGFELDGRLLTVNKAAP----------RGTPRLRQPRTFNSGLRAYVGNLPWDVDNSSL 232
Query: 320 RELFSEFGTITSCKIMRDPH-GVSRGSGFVAFSTPEE 355
+LFSE G + S +++ D G SRG GFV S E
Sbjct: 233 EQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAE 269
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 94/191 (49%), Gaps = 16/191 (8%)
Query: 81 LNFTPLNGKPIRIMYSHRDPSVRKSGAAN---IFVKNLDKSIDHKALYDTFLVFGNILTC 137
L PL+G+ +S R S S N +FV ++ ++ + + F GN++
Sbjct: 58 LPPPPLSGQKRGFPFSGRGASPDHSDGGNFAKLFVGSVPRTATEEDIRPLFEEHGNVVEV 117
Query: 138 KIATD-GSGQSKGYGFVQFENEESAQNAIDNFNGKL-----IGDKEVYVSHFQRKQDREN 191
+ D +GQ +G F+++ E A AI + + +G +V R D E
Sbjct: 118 ALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNRHTLPGGVGPIQV------RYADGER 171
Query: 192 AALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENAD 251
LG ++ ++V +L++ + +++++FS+YG I +MRD +S+ GFV + + D
Sbjct: 172 ERLGAVEYK-LFVGSLNKQASVKEVEEVFSKYGRIEDVYLMRDDQKQSRGCGFVKYSHRD 230
Query: 252 EAAKAVDALNG 262
A A++ALNG
Sbjct: 231 MALAAINALNG 241
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 14/190 (7%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
L+VG + + + LF + G VV V + +D T Q G ++ + ++A A+ L
Sbjct: 90 LFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 149
Query: 82 N---FTPLNGKPIRIMYSHRDPSVRKSGAA--NIFVKNLDKSIDHKALYDTFLVFGNILT 136
+ P PI++ Y+ D + GA +FV +L+K K + + F +G I
Sbjct: 150 HNRHTLPGGVGPIQVRYA--DGERERLGAVEYKLFVGSLNKQASVKEVEEVFSKYGRIED 207
Query: 137 CKIATDGSGQSKGYGFVQFENEESAQNAIDNFNG--KLIGDKEVYVSHF-----QRKQDR 189
+ D QS+G GFV++ + + A AI+ NG + G ++ + F R+ D
Sbjct: 208 VYLMRDDQKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFADPKRPRQGDS 267
Query: 190 ENAALGGGKF 199
A G F
Sbjct: 268 RGPAFGSAGF 277
>Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176186 | 20130731
Length = 309
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 13/170 (7%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
+L++GDL + +++S L+ F G++ SV+V R+ + S GYG+ F + ATA V
Sbjct: 98 TLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFS---HATAEKV 154
Query: 81 LN-----FTPLNGKPIRI---MYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTF-LVF 131
L P + R+ +S D +IFV +L + L++TF +
Sbjct: 155 LQNYAGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSY 214
Query: 132 GNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYV 180
++ K+ D +G+SKGYGFV+F +E A+ NG + + +
Sbjct: 215 PSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRI 264
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 13/172 (7%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCK-IATDGSGQSKGYGFVQFENEESAQNAIDNF 168
+++ +L +D L+ F G I + K I SG S+GYGF +F + +A+ + N+
Sbjct: 99 LWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQNY 158
Query: 169 NGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNV-----YVKNLSEAMTDDDLKKIF-SE 222
G L+ + + + + + G +NV +V +L+ +TD L + F S
Sbjct: 159 AGILMPNADQAF-----RLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSS 213
Query: 223 YGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYVG 273
Y ++ +A V+ D + G+SK +GFV F + E ++A+ +NG + +G
Sbjct: 214 YPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIG 265
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 89/177 (50%), Gaps = 18/177 (10%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
+++ + + + +Y+ F++ G+V VR+ D +++S G GY+ F + A+
Sbjct: 203 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI-A 261
Query: 81 LNFTPLNGKPIRIMYSHRDPSVRKSGAAN--------------IFVKNLDKSIDHKALYD 126
L+ L G+P+ + S + ++ +S A++ ++V NL ++ L +
Sbjct: 262 LSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAVVGPYGAVDRKLYVGNLHFNMTEANLRE 321
Query: 127 TFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDNFNGKL-IGDKEVYVS 181
F FG I ++ D +G KG+GFVQF + E A+ A + NGKL I + + VS
Sbjct: 322 IFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAK-AAQSLNGKLEIAGRTIKVS 377
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 13/166 (7%)
Query: 109 NIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDN 167
+F + + +Y+ F G + ++ D S +SKG G+++F + S AI
Sbjct: 203 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI-A 261
Query: 168 FNGKLIGDKEVYV--SHFQRKQDRENAALG-------GGKFNNVYVKNLSEAMTDDDLKK 218
+G+L+ + V V S ++ + NA+ G G +YV NL MT+ +L++
Sbjct: 262 LSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAVVGPYGAVDRKLYVGNLHFNMTEANLRE 321
Query: 219 IFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGK 263
IF +G I + D++ G K FGFV F + E AKA +LNGK
Sbjct: 322 IFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHL-EHAKAAQSLNGK 366
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 15/174 (8%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDN- 167
+F+ + D + L + F +G ++ I D +G+++G+GFV F + A+ I +
Sbjct: 8 LFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIIDK 67
Query: 168 --FNGKLIGDKEVYVSHFQRKQDRENAAL----GGGKFNNVYVKNLSEAMTDDDLKKIFS 221
+G+ + K+ Q+ +R+ ++ G G+ ++V L +T+ D K F
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFKMYFD 127
Query: 222 EYGTITSAVVMRDVDG-KSKCFGFVNFENADEAA-----KAVDALNGKKFDDKE 269
++GTIT VVM D + + + FGF+ ++ ++EA K LNGK + K
Sbjct: 128 QFGTITDVVVMYDHNTQRPRGFGFITYD-SEEAVDRVLYKTFHELNGKMVEVKR 180
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 74/163 (45%), Gaps = 14/163 (8%)
Query: 202 VYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAV--- 257
+++ +S ++ LK+ F+ YG + AV+MRD G+++ FGFV F + A + +
Sbjct: 8 LFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIIDK 67
Query: 258 DALNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDE 317
++G+ + K+ + S+Q + + +++ L + +
Sbjct: 68 HIIDGRTVEAKK-------AVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITES 120
Query: 318 KLRELFSEFGTITSCKIMRDPHGV--SRGSGFVAFSTPEEATR 358
+ F +FGTIT +M D H RG GF+ + + E R
Sbjct: 121 DFKMYFDQFGTITDVVVMYD-HNTQRPRGFGFITYDSEEAVDR 162
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 15/174 (8%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDN- 167
+F+ + D + L + F +G ++ I D +G+++G+GFV F + A+ I +
Sbjct: 8 LFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIIDK 67
Query: 168 --FNGKLIGDKEVYVSHFQRKQDRENAAL----GGGKFNNVYVKNLSEAMTDDDLKKIFS 221
+G+ + K+ Q+ +R+ ++ G G+ ++V L +T+ D K F
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFKMYFD 127
Query: 222 EYGTITSAVVMRDVDG-KSKCFGFVNFENADEAA-----KAVDALNGKKFDDKE 269
++GTIT VVM D + + + FGF+ ++ ++EA K LNGK + K
Sbjct: 128 QFGTITDVVVMYDHNTQRPRGFGFITYD-SEEAVDRVLYKTFHELNGKMVEVKR 180
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 74/163 (45%), Gaps = 14/163 (8%)
Query: 202 VYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAV--- 257
+++ +S ++ LK+ F+ YG + AV+MRD G+++ FGFV F + A + +
Sbjct: 8 LFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIIDK 67
Query: 258 DALNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDE 317
++G+ + K+ + S+Q + + +++ L + +
Sbjct: 68 HIIDGRTVEAKK-------AVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITES 120
Query: 318 KLRELFSEFGTITSCKIMRDPHGV--SRGSGFVAFSTPEEATR 358
+ F +FGTIT +M D H RG GF+ + + E R
Sbjct: 121 DFKMYFDQFGTITDVVVMYD-HNTQRPRGFGFITYDSEEAVDR 162
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 19/178 (10%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
+++ + + + +Y+ F++ G+V VR+ D +++S G GY+ F + A+
Sbjct: 216 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI-A 274
Query: 81 LNFTPLNGKPIRIMYSHRDPSVRKS----GAANI-----------FVKNLDKSIDHKALY 125
L+ L G+P+ + S + ++ +S GAA + +V NL ++ L
Sbjct: 275 LSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQLR 334
Query: 126 DTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDNFNGKL-IGDKEVYVS 181
+ F FG + ++ D +G KG+GF+QF + E A+ A + NGKL I + + VS
Sbjct: 335 EIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAK-AAQSLNGKLEIAGRTIKVS 391
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 14/167 (8%)
Query: 109 NIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDN 167
+F + + +Y+ F G + ++ D S +SKG G+++F + S AI
Sbjct: 216 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI-A 274
Query: 168 FNGKLIGDKEVYV--SHFQRKQDRENAALG--------GGKFNNVYVKNLSEAMTDDDLK 217
+G+L+ + V V S ++ + N G G +YV NL MT+ L+
Sbjct: 275 LSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQLR 334
Query: 218 KIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGK 263
+IF +GT+ + D++ G K FGF+ F + E AKA +LNGK
Sbjct: 335 EIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHI-EHAKAAQSLNGK 380
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 19/178 (10%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
+++ + + + +Y+ F++ G+V VR+ D +++S G GY+ F + A+
Sbjct: 216 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI-A 274
Query: 81 LNFTPLNGKPIRIMYSHRDPSVRKS----GAANI-----------FVKNLDKSIDHKALY 125
L+ L G+P+ + S + ++ +S GAA + +V NL ++ L
Sbjct: 275 LSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQLR 334
Query: 126 DTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDNFNGKL-IGDKEVYVS 181
+ F FG + ++ D +G KG+GF+QF + E A+ A + NGKL I + + VS
Sbjct: 335 EIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAK-AAQSLNGKLEIAGRTIKVS 391
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 14/167 (8%)
Query: 109 NIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDN 167
+F + + +Y+ F G + ++ D S +SKG G+++F + S AI
Sbjct: 216 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI-A 274
Query: 168 FNGKLIGDKEVYV--SHFQRKQDRENAALG--------GGKFNNVYVKNLSEAMTDDDLK 217
+G+L+ + V V S ++ + N G G +YV NL MT+ L+
Sbjct: 275 LSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQLR 334
Query: 218 KIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGK 263
+IF +GT+ + D++ G K FGF+ F + E AKA +LNGK
Sbjct: 335 EIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHI-EHAKAAQSLNGK 380
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 19/178 (10%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
+++ + + + +Y+ F++ G+V VR+ D +++S G GY+ F + A+
Sbjct: 216 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI-A 274
Query: 81 LNFTPLNGKPIRIMYSHRDPSVRKS----GAANI-----------FVKNLDKSIDHKALY 125
L+ L G+P+ + S + ++ +S GAA + +V NL ++ L
Sbjct: 275 LSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQLR 334
Query: 126 DTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDNFNGKL-IGDKEVYVS 181
+ F FG + ++ D +G KG+GF+QF + E A+ A + NGKL I + + VS
Sbjct: 335 EIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAK-AAQSLNGKLEIAGRTIKVS 391
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 14/167 (8%)
Query: 109 NIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDN 167
+F + + +Y+ F G + ++ D S +SKG G+++F + S AI
Sbjct: 216 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI-A 274
Query: 168 FNGKLIGDKEVYV--SHFQRKQDRENAALG--------GGKFNNVYVKNLSEAMTDDDLK 217
+G+L+ + V V S ++ + N G G +YV NL MT+ L+
Sbjct: 275 LSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQLR 334
Query: 218 KIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGK 263
+IF +GT+ + D++ G K FGF+ F + E AKA +LNGK
Sbjct: 335 EIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHI-EHAKAAQSLNGK 380
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 89/180 (49%), Gaps = 15/180 (8%)
Query: 104 KSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQ 162
+S + +F+ + + + L + F +G + I D +G+++G+GFV F + A
Sbjct: 2 QSDSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVAD 61
Query: 163 NAID---NFNGKLIGDKEVYVSHFQRKQDRENAAL----GGGKFNNVYVKNLSEAMTDDD 215
+ N +G+++ K+ Q R + ++ G G+ ++V L+ +T+ D
Sbjct: 62 IVVQEKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTESD 121
Query: 216 LKKIFSEYGTITSAVVMRDVDG-KSKCFGFVNFENADEAA-----KAVDALNGKKFDDKE 269
KK F ++GTIT VVM D + + + FGF+ ++ ++EA K LNGK + K
Sbjct: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYD-SEEAVDQVLLKTFHELNGKMVEVKR 180
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 89/180 (49%), Gaps = 15/180 (8%)
Query: 104 KSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQ 162
+S + +F+ + + + L + F +G + I D +G+++G+GFV F + A
Sbjct: 2 QSDSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVAD 61
Query: 163 NAID---NFNGKLIGDKEVYVSHFQRKQDRENAAL----GGGKFNNVYVKNLSEAMTDDD 215
+ N +G+++ K+ Q R + ++ G G+ ++V L+ +T+ D
Sbjct: 62 IVVQEKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTESD 121
Query: 216 LKKIFSEYGTITSAVVMRDVDG-KSKCFGFVNFENADEAA-----KAVDALNGKKFDDKE 269
KK F ++GTIT VVM D + + + FGF+ ++ ++EA K LNGK + K
Sbjct: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYD-SEEAVDQVLLKTFHELNGKMVEVKR 180
>Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:12627820-12622359 | 20130731
Length = 324
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 78/162 (48%), Gaps = 5/162 (3%)
Query: 109 NIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNF 168
N+ V NL S+ + D F G ++ +I G+ KGY FV ++ E AQ A+D F
Sbjct: 97 NLIVFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSKDGKGKGYTFVTMDSGEGAQAAVDKF 156
Query: 169 NGKLIGDKEVYVSH---FQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSE-YG 224
N I + + V F++ + A +Y NL+ L+ IF+E +
Sbjct: 157 NATEISGRILRVEFAKGFKKPRPPPPAPTPKEARYVIYASNLAWKARSTHLRDIFTENFK 216
Query: 225 TITSA-VVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKF 265
T SA VV + GKS +GFV++ +EA A+ AL GK+
Sbjct: 217 TPVSARVVFQVPGGKSAGYGFVSYHTEEEAEAAISALQGKEL 258
>Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:35718041-35708690 | 20130731
Length = 962
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 88 GKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQ 146
GK + M + D +V++ +FV NL S + L TF G + C + T GS Q
Sbjct: 2 GKKNKAMKENSDGTVKQC-PLTLFVSNLPYSFTNSQLEQTFSEVGPVRRCFMVTQKGSTQ 60
Query: 147 SKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDREN 191
+G+G+VQF E+ A AI+ N L+GD+++ V H + REN
Sbjct: 61 HRGFGYVQFAVEKDANQAIELKNSSLVGDRKIVVKHAIPRPPREN 105
>Medtr2g070540.1 | CTC-interacting domain protein | HC |
chr2:29723724-29729859 | 20130731
Length = 298
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 16/173 (9%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD- 79
++YV D+D + + +L LF GQV+ R+C D L + +V F + A AL+
Sbjct: 114 TVYVSDIDQHVTEERLAALFTNCGQVIDCRICGD--PHSVLRFAFVEFADEHGARAALNL 171
Query: 80 ---VLNFTPLNGKPIRIMYSHRDPSV-------RKSGAANIFVKNLDKSIDHKALYDTF- 128
VL + P+ P + +P+ R+ ++ N+DK I + + F
Sbjct: 172 GGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCTRTVYCTNIDKKISQAEVKNFFE 231
Query: 129 LVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVS 181
G + ++ D S FV+F ESA A+ N +G L+G + + VS
Sbjct: 232 SSCGEVTRLRLLGD-QVHSTRIAFVEFAMAESAIVAL-NCSGMLLGTQPIRVS 282
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 85/182 (46%), Gaps = 20/182 (10%)
Query: 108 ANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQ-SKGYGFVQFENEESAQNAID 166
A +FV + + L F +G++L I+ D + + +G+GFV F + SA NA+
Sbjct: 10 AKLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSAHNALQ 69
Query: 167 NFNGKLIGDKEVY--VSHFQRKQDRENAALGGGKFNN------------VYVKNLSEAMT 212
+ + L EV + ++ Q + GG ++ ++V L M+
Sbjct: 70 DTHAILGRKVEVRKAIPRSEQLQQNQLQNRGGNSYSGYECGNEHIRTKKIFVGGLPANMS 129
Query: 213 DDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEA----AKAVDALNGKKFDD 267
++ K+ F +G IT VVM+D + + + FGF+ F++ D ++ LNG++ +
Sbjct: 130 VEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQSVMMRSFHDLNGRQVEV 189
Query: 268 KE 269
K
Sbjct: 190 KR 191
>Medtr3g092550.1 | CTC-interacting domain protein | HC |
chr3:42290596-42284870 | 20130731
Length = 384
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 20/175 (11%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
++YV D+D ++ + QL LF GQVV RVC D L + +V FT+ A AL++
Sbjct: 200 TVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGD--PNSILRFAFVEFTDEVGARAALNL 257
Query: 81 ----LNFTPLNGKPIRIMYSHRDPSV-------RKSGAANIFVKNLDKSI---DHKALYD 126
L + PL P + + +P+ R+ I+ NLDK + D K ++
Sbjct: 258 SGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCTRTIYCTNLDKKLTQADVKHFFE 317
Query: 127 TFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVS 181
+ + G + ++ D S FV+F ESA A+ + +G ++G + VS
Sbjct: 318 S--ICGEVQRLRLLGD-YHHSTRIAFVEFAVAESAIAAL-SCSGVVLGSLPIRVS 368
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 19 PTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATAL 78
+ L++G L ++D L D F G VV RV D T +S G+G+VNFT+ + A +AL
Sbjct: 35 SSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL 94
Query: 79 DVLNFTPLNGKPIRIMYSH 97
++ LNG+ IR+ Y++
Sbjct: 95 S-MDGQDLNGRNIRVSYAN 112
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 61/99 (61%), Gaps = 6/99 (6%)
Query: 90 PIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSK 148
P+ M ++ +R ++ +F+ L ++D ++L D F +G+++ ++ TD +G+S+
Sbjct: 22 PVSSMLNY----LRHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSR 77
Query: 149 GYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQ 187
G+GFV F +EESA +A+ + +G+ + + + VS+ +Q
Sbjct: 78 GFGFVNFTSEESATSAL-SMDGQDLNGRNIRVSYANDRQ 115
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 58.5 bits (140), Expect = 9e-09, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 47/79 (59%)
Query: 20 TSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
T L++ L N++ L D F Q GQ++ V+V + T +S GYG+V F + AATA
Sbjct: 33 TKLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAATARK 92
Query: 80 VLNFTPLNGKPIRIMYSHR 98
L+ ++G+ IR+ Y+H+
Sbjct: 93 ELHGQIVDGRRIRVGYAHK 111
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 102 VRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCK-IATDGSGQSKGYGFVQFENEES 160
VR + +F+ L + + L DTF G I+ K I +G+SKGYGFV+F +E +
Sbjct: 27 VRHHSSTKLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETA 86
Query: 161 AQNAIDNFNGKLIGDKEVYVSHFQR 185
A A +G+++ + + V + +
Sbjct: 87 AATARKELHGQIVDGRRIRVGYAHK 111
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 10/165 (6%)
Query: 107 AANIFVKNLDKSIDHKALYDTF---LVFGNILTCKIAT---DGSGQSKGYGFVQFENEES 160
A ++FVKNL+ + L + F + G IL+ K+ +G S G+GFV+F++ E+
Sbjct: 640 ARSLFVKNLNFKTTDEVLREHFSEHMKEGRILSVKVKKHLKNGKNVSMGFGFVEFDSTET 699
Query: 161 AQNAIDNFNGKLIGDKEVYVS--HFQRKQDRENAALGGGKFNN-VYVKNLSEAMTDDDLK 217
A + ++ G ++ + + H + D+ + K + + VKN++ T+ DL+
Sbjct: 700 ATSVCNDLQGTVLDGHALILQLCHVKNDDDKVQKKVEKDKSSTKLLVKNVAFEATEKDLR 759
Query: 218 KIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNG 262
++FS +G I S + G + F FV + EA A+ AL+
Sbjct: 760 QLFSPFGQIKSLRLPMKF-GNHRGFAFVEYVTQQEAQNALTALSS 803
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 14/158 (8%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQI---GQVVSVRVCRDLATQQ--SLGYGYVNFTNPKDAA 75
SL+V +L+ + D L + F++ G+++SV+V + L + S+G+G+V F + + A
Sbjct: 642 SLFVKNLNFKTTDEVLREHFSEHMKEGRILSVKVKKHLKNGKNVSMGFGFVEFDSTETAT 701
Query: 76 TALDVLNFTPLNGKPIRIMYSH---RDPSVRK-----SGAANIFVKNLDKSIDHKALYDT 127
+ + L T L+G + + H D V+K + + VKN+ K L
Sbjct: 702 SVCNDLQGTVLDGHALILQLCHVKNDDDKVQKKVEKDKSSTKLLVKNVAFEATEKDLRQL 761
Query: 128 FLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAI 165
F FG I + ++ G +G+ FV++ ++ AQNA+
Sbjct: 762 FSPFGQIKSLRLPM-KFGNHRGFAFVEYVTQQEAQNAL 798
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 19/167 (11%)
Query: 201 NVYVKNLSEAMTDDDLKKIFSEY---GTITSAVVMRDV-DGK--SKCFGFVNFENADEAA 254
+++VKNL+ TD+ L++ FSE+ G I S V + + +GK S FGFV F++ + A
Sbjct: 642 SLFVKNLNFKTTDEVLREHFSEHMKEGRILSVKVKKHLKNGKNVSMGFGFVEFDSTETAT 701
Query: 255 KAVDALNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGAN-LYLKNLDDN 313
+ L G D + + +Q+ V+K + + L +KN+
Sbjct: 702 SVCNDLQGTVLDGHALIL---------QLCHVKNDDDKVQKKVEKDKSSTKLLVKNVAFE 752
Query: 314 VDDEKLRELFSEFGTITSCKI-MRDPHGVSRGSGFVAFSTPEEATRA 359
++ LR+LFS FG I S ++ M+ G RG FV + T +EA A
Sbjct: 753 ATEKDLRQLFSPFGQIKSLRLPMK--FGNHRGFAFVEYVTQQEAQNA 797
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 192 AALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENAD 251
A + G + + VKNL + + +D LK+ FS G IT +MR +GKS+ F F+ F
Sbjct: 17 AIILEGAMSRICVKNLPKYVAEDRLKQEFSRKGEITDVKLMRTKNGKSRQFAFIGFRTDQ 76
Query: 252 EAAKAVDALNGKKFD 266
EA A+ N D
Sbjct: 77 EAQAAIKYFNKSYLD 91
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 81/174 (46%), Gaps = 6/174 (3%)
Query: 20 TSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
T LY G+L ++ + L L + G + V D T +S G+ +V + +D +
Sbjct: 113 TKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQ 172
Query: 80 VLNFTPLNGKPIRIMYS----HRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNIL 135
L+ G+ +R+ +S ++P + +FV NL ++ ++L F G ++
Sbjct: 173 NLDGKEFMGRTLRVNFSDKPKPKEP-LYPETEYKLFVGNLAWTVTSESLTQAFQEHGTVV 231
Query: 136 TCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQD 188
++ DG +G+S+GYGFV + + A+ + + + + VS Q K+
Sbjct: 232 GARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVSLAQGKRS 285
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 79/165 (47%), Gaps = 4/165 (2%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNF 168
++ NL S+D L +G+ ++ D +G+S+G+ FV E I N
Sbjct: 115 LYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQNL 174
Query: 169 NGKLIGDKEVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITS 228
+GK + + V+ + + +E L ++V NL+ +T + L + F E+GT+
Sbjct: 175 DGKEFMGRTLRVNFSDKPKPKE--PLYPETEYKLFVGNLAWTVTSESLTQAFQEHGTVVG 232
Query: 229 AVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYV 272
A V+ D + GKS+ +GFV++ E A+ ++ + + + V
Sbjct: 233 ARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRV 277
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 68/158 (43%), Gaps = 15/158 (9%)
Query: 200 NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVD 258
+Y NL ++ L + EYG+ V+ D D GKS+ F FV ++ +
Sbjct: 113 TKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQ 172
Query: 259 ALNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANLYLKNLDDNVDDEK 318
L+GK+F + V E ET K L++ NL V E
Sbjct: 173 NLDGKEFMGRTLRVNFSDKPK--------PKEPLYPETEYK-----LFVGNLAWTVTSES 219
Query: 319 LRELFSEFGTITSCKIMRDPH-GVSRGSGFVAFSTPEE 355
L + F E GT+ +++ D G SRG GFV+++T E
Sbjct: 220 LTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSE 257
>Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:35593441-35588449 | 20130731
Length = 240
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
L+ GDL E+ND L F + RV RD T ++ GYG+++F NP D A AL +
Sbjct: 134 LFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPADLAAALKEM 193
Query: 82 NFTPLNGKPIRIMYS 96
N + +PI++ S
Sbjct: 194 NGKYVGNRPIKLRKS 208
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 104/275 (37%), Gaps = 58/275 (21%)
Query: 26 DLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD---VLN 82
D+DTE L + ++ G++ V ++ +T +S G+GYV F + DA L VL
Sbjct: 14 DVDTE----GLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSGEHVLG 69
Query: 83 FTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD 142
L K R P+ + IFV + S+ + F +G+I + D
Sbjct: 70 DRMLEVKVATPKEEMRAPAKK---VTRIFVARIPPSVTEETFRSHFEKYGDITDLYMPKD 126
Query: 143 -GSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQD------RENAALG 195
GS +G GF+ F N ES +N + + +G V V K+D R + G
Sbjct: 127 QGSKMHRGIGFITFGNAESVENLMSETH--ELGGSAVVVDRATPKEDDVKPTGRMSQGGG 184
Query: 196 GGKFN------------------------------------NVYVKNLSEAMTDDDLKKI 219
G +N ++V L +DL++
Sbjct: 185 YGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSEDLRQY 244
Query: 220 FSEYGTITSAVVMRDVDGKS-KCFGFVNFENADEA 253
F +G I + RD + FGFV F ADE
Sbjct: 245 FGRFGRIEDVYIPRDPKRTGHRGFGFVTF--ADEG 277
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 104/275 (37%), Gaps = 58/275 (21%)
Query: 26 DLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD---VLN 82
D+DTE L + ++ G++ V ++ +T +S G+GYV F + DA L VL
Sbjct: 14 DVDTE----GLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSGEHVLG 69
Query: 83 FTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD 142
L K R P+ + IFV + S+ + F +G+I + D
Sbjct: 70 DRMLEVKVATPKEEMRAPAKK---VTRIFVARIPPSVTEETFRSHFEKYGDITDLYMPKD 126
Query: 143 -GSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQD------RENAALG 195
GS +G GF+ F N ES +N + + +G V V K+D R + G
Sbjct: 127 QGSKMHRGIGFITFGNAESVENLMSETH--ELGGSAVVVDRATPKEDDVKPTGRMSQGGG 184
Query: 196 GGKFN------------------------------------NVYVKNLSEAMTDDDLKKI 219
G +N ++V L +DL++
Sbjct: 185 YGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSEDLRQY 244
Query: 220 FSEYGTITSAVVMRDVDGKS-KCFGFVNFENADEA 253
F +G I + RD + FGFV F ADE
Sbjct: 245 FGRFGRIEDVYIPRDPKRTGHRGFGFVTF--ADEG 277
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 104/275 (37%), Gaps = 58/275 (21%)
Query: 26 DLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD---VLN 82
D+DTE L + ++ G++ V ++ +T +S G+GYV F + DA L VL
Sbjct: 14 DVDTE----GLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSGEHVLG 69
Query: 83 FTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD 142
L K R P+ + IFV + S+ + F +G+I + D
Sbjct: 70 DRMLEVKVATPKEEMRAPAKK---VTRIFVARIPPSVTEETFRSHFEKYGDITDLYMPKD 126
Query: 143 -GSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQD------RENAALG 195
GS +G GF+ F N ES +N + + +G V V K+D R + G
Sbjct: 127 QGSKMHRGIGFITFGNAESVENLMSETH--ELGGSAVVVDRATPKEDDVKPTGRMSQGGG 184
Query: 196 GGKFN------------------------------------NVYVKNLSEAMTDDDLKKI 219
G +N ++V L +DL++
Sbjct: 185 YGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSEDLRQY 244
Query: 220 FSEYGTITSAVVMRDVDGKS-KCFGFVNFENADEA 253
F +G I + RD + FGFV F ADE
Sbjct: 245 FGRFGRIEDVYIPRDPKRTGHRGFGFVTF--ADEG 277
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 104/275 (37%), Gaps = 58/275 (21%)
Query: 26 DLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD---VLN 82
D+DTE L + ++ G++ V ++ +T +S G+GYV F + DA L VL
Sbjct: 14 DVDTE----GLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSGEHVLG 69
Query: 83 FTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD 142
L K R P+ + IFV + S+ + F +G+I + D
Sbjct: 70 DRMLEVKVATPKEEMRAPAKK---VTRIFVARIPPSVTEETFRSHFEKYGDITDLYMPKD 126
Query: 143 -GSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQD------RENAALG 195
GS +G GF+ F N ES +N + + +G V V K+D R + G
Sbjct: 127 QGSKMHRGIGFITFGNAESVENLMSETH--ELGGSAVVVDRATPKEDDVKPTGRMSQGGG 184
Query: 196 GGKFN------------------------------------NVYVKNLSEAMTDDDLKKI 219
G +N ++V L +DL++
Sbjct: 185 YGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSEDLRQY 244
Query: 220 FSEYGTITSAVVMRDVDGKS-KCFGFVNFENADEA 253
F +G I + RD + FGFV F ADE
Sbjct: 245 FGRFGRIEDVYIPRDPKRTGHRGFGFVTF--ADEG 277
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 108 ANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAID 166
AN+F+ ++ + + L + F FG +L+ K+ D +G SK +GFV +++ E+AQ+AI
Sbjct: 349 ANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 408
Query: 167 NFNGKLIGDKEVYVSH 182
NG +G K++ V H
Sbjct: 409 MMNGCQLGGKKLKVQH 424
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 201 NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVDA 259
N+++ ++ + D +L F +G + SA V D G SKCFGFV++++ + A A+
Sbjct: 350 NLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 409
Query: 260 LNGKKFDDKEWYV 272
+NG + K+ V
Sbjct: 410 MNGCQLGGKKLKV 422
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 48/83 (57%)
Query: 13 EANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPK 72
+A P +L++ + E D +L + F G+V+S +V D AT S +G+V++ +P+
Sbjct: 342 QAEGPPGANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPE 401
Query: 73 DAATALDVLNFTPLNGKPIRIMY 95
A +A+ ++N L GK +++ +
Sbjct: 402 AAQSAISMMNGCQLGGKKLKVQH 424
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 108 ANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAID 166
AN+F+ ++ + + L + F FG +L+ K+ D +G SK +GFV +++ E+AQ+AI
Sbjct: 348 ANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 407
Query: 167 NFNGKLIGDKEVYVSH 182
NG +G K++ V H
Sbjct: 408 MMNGCQLGGKKLKVQH 423
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 6/153 (3%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
L+VG + + + +L LF + V V + +D AT+ S G +V + +A A++
Sbjct: 18 LFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 77
Query: 82 N---FTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCK 138
+ P P+++ Y+ D + + +F+ L K+I + F +G I +
Sbjct: 78 HNKKTLPGASSPLQVKYA--DGELERL-EHKLFIGMLPKNISEVEVSALFSKYGTIKDLQ 134
Query: 139 IATDGSGQSKGYGFVQFENEESAQNAIDNFNGK 171
I SKG F+++E +E A A++ NGK
Sbjct: 135 ILRGSQQTSKGCAFLKYETKEQALAALEAINGK 167
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 201 NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVDA 259
N+++ ++ + D +L F +G + SA V D G SKCFGFV++++ + A A+
Sbjct: 349 NLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 408
Query: 260 LNGKKFDDKEWYV 272
+NG + K+ V
Sbjct: 409 MNGCQLGGKKLKV 421
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 48/83 (57%)
Query: 13 EANQPMPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPK 72
+A P +L++ + E D +L + F G+V+S +V D AT S +G+V++ +P+
Sbjct: 341 QAEGPPGANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPE 400
Query: 73 DAATALDVLNFTPLNGKPIRIMY 95
A +A+ ++N L GK +++ +
Sbjct: 401 AAQSAISMMNGCQLGGKKLKVQH 423
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 52/83 (62%)
Query: 20 TSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALD 79
T L++G + +++ L + F++ G+V+ R+ D T +S G+G++ F + ++A++A+
Sbjct: 42 TKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQ 101
Query: 80 VLNFTPLNGKPIRIMYSHRDPSV 102
L+ L+G+ +R+ Y++ P V
Sbjct: 102 ALDGQDLHGRRVRVNYANERPRV 124
>Medtr3g092510.1 | CTC-interacting domain protein | HC |
chr3:42267137-42262435 | 20130731
Length = 376
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 20/175 (11%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
++YV D+D + + QL LF GQVV RVC D L + ++ FT+ + A A+ +
Sbjct: 193 TVYVSDIDQLVTEEQLASLFLNCGQVVDCRVCGD--PNSILRFAFIEFTDEESARAAVSL 250
Query: 81 ----LNFTPLNGKPIRIMYSHRDPSV-------RKSGAANIFVKNLDKSI---DHKALYD 126
L + PL P + + +P+ R+ + I+ N+DK + D K ++
Sbjct: 251 SGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFE 310
Query: 127 TFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVS 181
+ + G + ++ D S FV+F ESA A+ +G ++G + VS
Sbjct: 311 S--ICGEVHRLRLLGDYQ-HSTRIAFVEFAVAESAIAALS-CSGVILGALPIRVS 361
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 82/175 (46%), Gaps = 15/175 (8%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDN- 167
+F+ + + L F FG+++ I D +G+++G+GFV F + A+ +
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
Query: 168 --FNGKLIGDKEVYVSHFQRKQDRENAALGGG------KFNNVYVKNLSEAMTDDDLKKI 219
+G+ + K+ Q R N++ G + ++V L+ +T+ D K
Sbjct: 66 HVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFKNY 125
Query: 220 FSEYGTITSAVVMRDVDG-KSKCFGFVNFENADEAAKAVDA----LNGKKFDDKE 269
F ++GTIT VVM D + + + FGF+ +++ + K + LNGK + K
Sbjct: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKR 180
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 23/176 (13%)
Query: 19 PTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATAL 78
P L++G + + N+ +L F G VV + +D T ++ G+G+V F +P A
Sbjct: 3 PGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV- 61
Query: 79 DVLNFTPLNGKPIRI----------------MYSHRDPSVRKSGAANIFVKNLDKSIDHK 122
V+ ++G+ + SH P+ IFV L ++
Sbjct: 62 -VMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTES 120
Query: 123 ALYDTFLVFGNILTCKIATDGSGQ-SKGYGFVQFENEESAQNAIDN----FNGKLI 173
+ F FG I + D + Q +G+GF+ +++EE+ + + NGK++
Sbjct: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMV 176
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 82/175 (46%), Gaps = 15/175 (8%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDN- 167
+F+ + + L F FG+++ I D +G+++G+GFV F + A+ +
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
Query: 168 --FNGKLIGDKEVYVSHFQRKQDRENAALGGG------KFNNVYVKNLSEAMTDDDLKKI 219
+G+ + K+ Q R N++ G + ++V L+ +T+ D K
Sbjct: 66 HVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFKNY 125
Query: 220 FSEYGTITSAVVMRDVDG-KSKCFGFVNFENADEAAKAVDA----LNGKKFDDKE 269
F ++GTIT VVM D + + + FGF+ +++ + K + LNGK + K
Sbjct: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKR 180
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 23/176 (13%)
Query: 19 PTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATAL 78
P L++G + + N+ +L F G VV + +D T ++ G+G+V F +P A
Sbjct: 3 PGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV- 61
Query: 79 DVLNFTPLNGKPIRI----------------MYSHRDPSVRKSGAANIFVKNLDKSIDHK 122
V+ ++G+ + SH P+ IFV L ++
Sbjct: 62 -VMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTES 120
Query: 123 ALYDTFLVFGNILTCKIATDGSGQ-SKGYGFVQFENEESAQNAIDN----FNGKLI 173
+ F FG I + D + Q +G+GF+ +++EE+ + + NGK++
Sbjct: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMV 176
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 82/175 (46%), Gaps = 15/175 (8%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDN- 167
+F+ + + L F FG+++ I D +G+++G+GFV F + A+ +
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
Query: 168 --FNGKLIGDKEVYVSHFQRKQDRENAALGGG------KFNNVYVKNLSEAMTDDDLKKI 219
+G+ + K+ Q R N++ G + ++V L+ +T+ D K
Sbjct: 66 HVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFKNY 125
Query: 220 FSEYGTITSAVVMRDVDG-KSKCFGFVNFENADEAAKAVDA----LNGKKFDDKE 269
F ++GTIT VVM D + + + FGF+ +++ + K + LNGK + K
Sbjct: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKR 180
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 23/176 (13%)
Query: 19 PTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATAL 78
P L++G + + N+ +L F G VV + +D T ++ G+G+V F +P A
Sbjct: 3 PGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV- 61
Query: 79 DVLNFTPLNGKPIRI----------------MYSHRDPSVRKSGAANIFVKNLDKSIDHK 122
V+ ++G+ + SH P+ IFV L ++
Sbjct: 62 -VMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTES 120
Query: 123 ALYDTFLVFGNILTCKIATDGSGQ-SKGYGFVQFENEESAQNAIDN----FNGKLI 173
+ F FG I + D + Q +G+GF+ +++EE+ + + NGK++
Sbjct: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMV 176
>Medtr7g096260.2 | multiple RNA-binding domain protein | HC |
chr7:38600263-38612243 | 20130731
Length = 723
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/375 (21%), Positives = 150/375 (40%), Gaps = 41/375 (10%)
Query: 19 PTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATAL 78
P L+V +L + +L + F+Q G V V + T++S G +++F+ P+ AA AL
Sbjct: 191 PCRLFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAFIHFSVPEFAARAL 250
Query: 79 DVLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCK 138
+ N + G+ +R++ + + + G+ + ++ +A DT +
Sbjct: 251 EESNNSIFQGRLLRVIPAKSNEENKDQGSKTHKQRREEERKAAEAKGDTRAWNSLFMRQD 310
Query: 139 IATDGSGQSKGYG---FVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALG 195
T+ + G + E ++ A N ++ K + + E A G
Sbjct: 311 TITENVTRKHGVSKSDLLGPEADDVAANVALGETDVILETKNAFKKAGVNVESLEELAEG 370
Query: 196 ---GGKFNN--VYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENA 250
G K +N + KNL T+++L ++F ++G++ ++ ++ V F
Sbjct: 371 KVYGVKRSNHVLLAKNLPYGATENELAEMFGKFGSLDKIIL-----PSTRTLALVIFLEP 425
Query: 251 DEAAKAVDALNGKKFDDKEWYVGXXXXXXXXXXXXXXQ-------HEQSMQETV------ 297
EA A L KK+ Y+ E+ ++ +
Sbjct: 426 AEAKAAFGGLAYKKYRAAPLYLEWAPSDVLSPKSQSKNDEVNNGISEKDVKRVILEKDVE 485
Query: 298 ---------DKYQGANLYLKNLDDNVDDEKLRELFSEF---GTITSC---KIMRDPHGVS 342
D+ + +L++KNL+ DE LRE FS+ G I S K ++ VS
Sbjct: 486 KISDVDIDPDRIEARSLFVKNLNFKTTDEGLREHFSKHMKEGRILSVKVKKHLKKGKNVS 545
Query: 343 RGSGFVAFSTPEEAT 357
G GFV F + E AT
Sbjct: 546 MGFGFVEFDSAETAT 560
>Medtr4g068120.2 | flowering time control FPA-like protein | HC |
chr4:25458538-25448035 | 20130731
Length = 973
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 110/286 (38%), Gaps = 63/286 (22%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
LYV +L ++ DS L DLF Q G + SV + + Y +V F DA A + L
Sbjct: 29 LYVANLSPDVTDSDLMDLFVQYGALDSV------TSYSARNYAFVFFKRIDDAKAAKNAL 82
Query: 82 NFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIAT 141
G +RI ++ + ++ ++V + ++ + L F FG + K
Sbjct: 83 QGFNFRGNSLRIEFARPAKTCKQ-----LWVGGISPAVTKEDLEADFRKFGKVEDFKFFR 137
Query: 142 DGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAAL------- 194
D + V+F N + A A+ NGK IG + + V + + + L
Sbjct: 138 D-----RNTACVEFFNLDDAIQAMKIMNGKHIGGENIRVDFLRSNYAKRDQGLDYGQFQG 192
Query: 195 -------------------------GGGKFNNV----YVKN--LSEAMTDDDLKKIFSEY 223
G G+ NN+ Y N + E M + + +F E
Sbjct: 193 KSFGPSDSYSGHKRPLNSQPLMRRKGDGQPNNILWIGYPPNVQIDEQMLHNAM-ILFGEI 251
Query: 224 GTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKFDDKE 269
I S S+ F FV F + DEA +A + L G+ F+D
Sbjct: 252 ERIKSV--------PSRNFSFVEFRSVDEARRAKEGLQGRLFNDPH 289
>Medtr4g068120.1 | flowering time control FPA-like protein | HC |
chr4:25458538-25450507 | 20130731
Length = 973
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 110/286 (38%), Gaps = 63/286 (22%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
LYV +L ++ DS L DLF Q G + SV + + Y +V F DA A + L
Sbjct: 29 LYVANLSPDVTDSDLMDLFVQYGALDSV------TSYSARNYAFVFFKRIDDAKAAKNAL 82
Query: 82 NFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIAT 141
G +RI ++ + ++ ++V + ++ + L F FG + K
Sbjct: 83 QGFNFRGNSLRIEFARPAKTCKQ-----LWVGGISPAVTKEDLEADFRKFGKVEDFKFFR 137
Query: 142 DGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAAL------- 194
D + V+F N + A A+ NGK IG + + V + + + L
Sbjct: 138 D-----RNTACVEFFNLDDAIQAMKIMNGKHIGGENIRVDFLRSNYAKRDQGLDYGQFQG 192
Query: 195 -------------------------GGGKFNNV----YVKN--LSEAMTDDDLKKIFSEY 223
G G+ NN+ Y N + E M + + +F E
Sbjct: 193 KSFGPSDSYSGHKRPLNSQPLMRRKGDGQPNNILWIGYPPNVQIDEQMLHNAM-ILFGEI 251
Query: 224 GTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKFDDKE 269
I S S+ F FV F + DEA +A + L G+ F+D
Sbjct: 252 ERIKSV--------PSRNFSFVEFRSVDEARRAKEGLQGRLFNDPH 289
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
L+VG L +++ L D F+ G V VR+ D + ++ G+G+V F+N A +A D +
Sbjct: 38 LFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDAM 97
Query: 82 NFTPLNGKPIRIMYSHRDP 100
+ L G+P+RI ++ P
Sbjct: 98 DGKALLGRPLRINFALEKP 116
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNF 168
+FV L S+D K+L D F FG++ +I D SG+++G+GFV F NE++A++A D
Sbjct: 38 LFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDAM 97
Query: 169 NGKLIGDKEVYV 180
+GK + + + +
Sbjct: 98 DGKALLGRPLRI 109
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 200 NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVD 258
N ++V LS ++ + LK FS +G +T ++ D D G+++ FGFV F N D A A D
Sbjct: 36 NKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKD 95
Query: 259 ALNGK 263
A++GK
Sbjct: 96 AMDGK 100
>Medtr8g031560.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:11851079-11853472 | 20130731
Length = 280
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 200 NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVD 258
N+V V NLSE + DL ++F +G+++ V D + G S+ FGFVNF N ++A +A++
Sbjct: 199 NSVRVTNLSEDTREPDLHELFGTFGSVSRVYVAIDKNTGTSRGFGFVNFVNREDAQRAIN 258
Query: 259 ALNGKKFDD 267
LNG +D+
Sbjct: 259 KLNGYGYDN 267
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 103 RKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESA 161
R++ ++ V NL + L++ F FG++ +A D +G S+G+GFV F N E A
Sbjct: 194 RRNDENSVRVTNLSEDTREPDLHELFGTFGSVSRVYVAIDKNTGTSRGFGFVNFVNREDA 253
Query: 162 QNAIDNFNG 170
Q AI+ NG
Sbjct: 254 QRAINKLNG 262
>Medtr7g096260.1 | multiple RNA-binding domain protein | HC |
chr7:38601352-38612085 | 20130731
Length = 709
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/375 (21%), Positives = 150/375 (40%), Gaps = 41/375 (10%)
Query: 19 PTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATAL 78
P L+V +L + +L + F+Q G V V + T++S G +++F+ P+ AA AL
Sbjct: 177 PCRLFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAFIHFSVPEFAARAL 236
Query: 79 DVLNFTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCK 138
+ N + G+ +R++ + + + G+ + ++ +A DT +
Sbjct: 237 EESNNSIFQGRLLRVIPAKSNEENKDQGSKTHKQRREEERKAAEAKGDTRAWNSLFMRQD 296
Query: 139 IATDGSGQSKGYG---FVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALG 195
T+ + G + E ++ A N ++ K + + E A G
Sbjct: 297 TITENVTRKHGVSKSDLLGPEADDVAANVALGETDVILETKNAFKKAGVNVESLEELAEG 356
Query: 196 ---GGKFNN--VYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENA 250
G K +N + KNL T+++L ++F ++G++ ++ ++ V F
Sbjct: 357 KVYGVKRSNHVLLAKNLPYGATENELAEMFGKFGSLDKIIL-----PSTRTLALVIFLEP 411
Query: 251 DEAAKAVDALNGKKFDDKEWYVGXXXXXXXXXXXXXXQ-------HEQSMQETV------ 297
EA A L KK+ Y+ E+ ++ +
Sbjct: 412 AEAKAAFGGLAYKKYRAAPLYLEWAPSDVLSPKSQSKNDEVNNGISEKDVKRVILEKDVE 471
Query: 298 ---------DKYQGANLYLKNLDDNVDDEKLRELFSEF---GTITSC---KIMRDPHGVS 342
D+ + +L++KNL+ DE LRE FS+ G I S K ++ VS
Sbjct: 472 KISDVDIDPDRIEARSLFVKNLNFKTTDEGLREHFSKHMKEGRILSVKVKKHLKKGKNVS 531
Query: 343 RGSGFVAFSTPEEAT 357
G GFV F + E AT
Sbjct: 532 MGFGFVEFDSAETAT 546
>Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 14/162 (8%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNF 168
IFV L L + F +G I CK TD SG+SKGYGF+ F+ A+NA+
Sbjct: 129 IFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEP 188
Query: 169 NGKLIGDKEVY-----VSHFQR----KQDRENAALGGGKFNN--VYVKNLSEAMTDDDLK 217
K IG++ + Q+ + G ++ +Y+ N+ + L
Sbjct: 189 QKK-IGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLF 247
Query: 218 KIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVD 258
FS +G I + D V GK K F +++A+ A +A++
Sbjct: 248 GFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALE 289
>Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 14/162 (8%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNF 168
IFV L L + F +G I CK TD SG+SKGYGF+ F+ A+NA+
Sbjct: 129 IFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEP 188
Query: 169 NGKLIGDKEVY-----VSHFQR----KQDRENAALGGGKFNN--VYVKNLSEAMTDDDLK 217
K IG++ + Q+ + G ++ +Y+ N+ + L
Sbjct: 189 QKK-IGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLF 247
Query: 218 KIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVD 258
FS +G I + D V GK K F +++A+ A +A++
Sbjct: 248 GFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALE 289
>Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 14/162 (8%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNF 168
IFV L L + F +G I CK TD SG+SKGYGF+ F+ A+NA+
Sbjct: 129 IFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEP 188
Query: 169 NGKLIGDKEVY-----VSHFQR----KQDRENAALGGGKFNN--VYVKNLSEAMTDDDLK 217
K IG++ + Q+ + G ++ +Y+ N+ + L
Sbjct: 189 QKK-IGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLF 247
Query: 218 KIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVD 258
FS +G I + D V GK K F +++A+ A +A++
Sbjct: 248 GFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALE 289
>Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 14/162 (8%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNF 168
IFV L L + F +G I CK TD SG+SKGYGF+ F+ A+NA+
Sbjct: 129 IFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEP 188
Query: 169 NGKLIGDKEVY-----VSHFQR----KQDRENAALGGGKFNN--VYVKNLSEAMTDDDLK 217
K IG++ + Q+ + G ++ +Y+ N+ + L
Sbjct: 189 QKK-IGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLF 247
Query: 218 KIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVD 258
FS +G I + D V GK K F +++A+ A +A++
Sbjct: 248 GFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALE 289
>Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304246-34300290 | 20130731
Length = 492
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 14/162 (8%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNF 168
IFV L L + F +G I CK TD SG+SKGYGF+ F+ A+NA+
Sbjct: 129 IFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEP 188
Query: 169 NGKLIGDKEVY-----VSHFQR----KQDRENAALGGGKFNN--VYVKNLSEAMTDDDLK 217
K IG++ + Q+ + G ++ +Y+ N+ + L
Sbjct: 189 QKK-IGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLF 247
Query: 218 KIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVD 258
FS +G I + D V GK K F +++A+ A +A++
Sbjct: 248 GFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALE 289
>Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 201 NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDA 259
++ V N++ T DDL +F +YG + + RD G+S+ F FV ++ ADEA+KAVD
Sbjct: 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDR 76
Query: 260 LNGKKFDDKEWYV 272
L+G+ D +E V
Sbjct: 77 LDGRMVDGREITV 89
>Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 201 NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDA 259
++ V N++ T DDL +F +YG + + RD G+S+ F FV ++ ADEA+KAVD
Sbjct: 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDR 76
Query: 260 LNGKKFDDKEWYV 272
L+G+ D +E V
Sbjct: 77 LDGRMVDGREITV 89
>Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 201 NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDA 259
++ V N++ T DDL +F +YG + + RD G+S+ F FV ++ ADEA+KAVD
Sbjct: 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDR 76
Query: 260 LNGKKFDDKEWYV 272
L+G+ D +E V
Sbjct: 77 LDGRMVDGREITV 89
>Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 201 NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDA 259
++ V N++ T DDL +F +YG + + RD G+S+ F FV ++ ADEA+KAVD
Sbjct: 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDR 76
Query: 260 LNGKKFDDKEWYV 272
L+G+ D +E V
Sbjct: 77 LDGRMVDGREITV 89
>Medtr7g094670.1 | mRNA capping enzyme, putative | LC |
chr7:37775862-37750453 | 20130731
Length = 1678
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 79/361 (21%), Positives = 151/361 (41%), Gaps = 50/361 (13%)
Query: 40 FNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVLNFTPLNGKPIRIMYS--- 96
F+Q G V V + D T++S G +++F+ P+ AA AL+ + + G+ + ++ +
Sbjct: 1228 FSQFGSVSQVHLVVDKDTKRSKGRAFIHFSVPEFAARALEESDNSIFQGRLLHVIAAIPI 1287
Query: 97 HRDPSVRKS-GAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYG---- 151
H + K+ G+ + + +++ +A DT N L + T S+ YG
Sbjct: 1288 HSNNEENKNQGSKTLKQRRVEERKAAEAKGDTRA--WNSLFMRPDTIAENASRKYGVSKS 1345
Query: 152 -FVQFENEESAQNAIDNFNGKLIGDKEVYVS---HFQRKQDRENAALGGGKFNN--VYVK 205
F+ E ++ A + K + + + ++ N + G K +N + K
Sbjct: 1346 DFLDPEADDLASRHSLAQTQVIFETKNAFKKAGVNVESLEELVNCKVDGVKRSNHVLLAK 1405
Query: 206 NLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKF 265
NL T+++L K+F ++G++ ++ +K V F EA A L K++
Sbjct: 1406 NLPYGATENELAKMFGKFGSLDKIIL-----PSTKTLALVIFLEPAEAKAAFRGLAYKRY 1460
Query: 266 DDKEWYVGXXXXXXXXXXXXXXQHE-------QSMQETV---------------DKYQGA 303
++ Y+ +E + ++ + D+ +
Sbjct: 1461 NEAPLYLEWAPSDILTSKSTSINNEVNSGIGGKDVKRVILEKDVERISDADIDPDRIEAR 1520
Query: 304 NLYLKNLDDNVDDEKLRELFSEF---GTITSCKI----MRDPHGVSRGSGFVAFSTPEEA 356
+L++KNL+ DE LRE E G I S K+ +++ VS G GFV F + E A
Sbjct: 1521 SLFVKNLNFKTTDEGLREHIREHMKEGRILSVKVKKKHLKNGKNVSMGFGFVEFDSTETA 1580
Query: 357 T 357
T
Sbjct: 1581 T 1581
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 79/375 (21%), Positives = 162/375 (43%), Gaps = 41/375 (10%)
Query: 19 PTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATAL 78
P L+V +L + +L + F+Q G V V + D T++S G +++F+ P+ AA AL
Sbjct: 898 PCRLFVRNLPYSTTEEELEEHFSQFGSVSQVHLVVDKDTKRSKGRAFIHFSVPEFAARAL 957
Query: 79 DVLNFTPLNGKPIRIMYS---HRDPSVRKS-GAANIFVKNLDKSIDHKALYDTFLVFGNI 134
+ + + G+ + ++ + H + K+ G+ + + +++ +A DT N
Sbjct: 958 EESDNSIFQGRLLHVIAAIPIHSNNEENKNQGSKTLKQRRVEERKAAEAKGDTRA--WNS 1015
Query: 135 LTCKIATDGSGQSKGYG-----FVQFENEESAQNAIDNFNGKLIGDKEVYVS---HFQRK 186
L + T S+ YG F+ E ++ A + K + + +
Sbjct: 1016 LFMRPDTIAENASRKYGVSKSDFLDPEADDLASRHSLAQTQVIFETKNAFKKAGVNVESL 1075
Query: 187 QDRENAALGGGKFNN--VYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVDGKSKCFGF 244
++ N + G K +N + KNL T+++L K+F ++G++ ++ +K
Sbjct: 1076 EELVNCKVDGVKRSNHVLLAKNLPYGATENELAKMFGKFGSLDKIIL-----PSTKTLAL 1130
Query: 245 VNFENADEAAKAVDALNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQS------------ 292
V F EA A L K++++ Y+ +E +
Sbjct: 1131 VIFLEPAEAKAAFRGLAYKRYNEAPLYLEWAPSDILTSKSTSINNEVNSGIGGKDVKRVI 1190
Query: 293 MQETVDKYQGANLYLKNLD-------DNVDDEKLRELFSEFGTITSCKIMRDP-HGVSRG 344
+++ V++ A++ ++ + +E+L E FS+FG+++ ++ D S+G
Sbjct: 1191 LEKDVERISDADIDPDRIEVWPIFTILLLYEEELEEHFSQFGSVSQVHLVVDKDTKRSKG 1250
Query: 345 SGFVAFSTPEEATRA 359
F+ FS PE A RA
Sbjct: 1251 RAFIHFSVPEFAARA 1265
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 10 VAQEANQPMPTS-LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNF 68
+A +A + M ++ LYVG + +D+ L + F + G V+ RV D +S G+G+V F
Sbjct: 29 LAFQAIRSMSSAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTF 88
Query: 69 TNPKDAATALDVLNFTPLNGKPIRIMYSHRDP 100
++A+ AL ++ L+G+ +R+ Y+ P
Sbjct: 89 ATSEEASAALQAMDNQELHGRTVRVNYAQERP 120
>Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 588
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 88/171 (51%), Gaps = 15/171 (8%)
Query: 102 VRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESA 161
+ SG+ +FV NL S+ + F G ++ + ++D G+ KG+G V+F + E+A
Sbjct: 323 IENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAA 382
Query: 162 QNAIDNFNGKLIGDKEVYV------SHFQRKQDRENAALGGGK--FNNVYVKNLSEAMTD 213
Q+A++ NG+ + + V + F + +A GG+ V+V+ + + +
Sbjct: 383 QSALE-MNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQSQTVFVRGFDKNLGE 441
Query: 214 DDLKKIFSEY-----GTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVD 258
D+++ E+ G T + +D + G SK F +++F+++D +KA++
Sbjct: 442 DEIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKALE 492
>Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 600
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 88/171 (51%), Gaps = 15/171 (8%)
Query: 102 VRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESA 161
+ SG+ +FV NL S+ + F G ++ + ++D G+ KG+G V+F + E+A
Sbjct: 335 IENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAA 394
Query: 162 QNAIDNFNGKLIGDKEVYV------SHFQRKQDRENAALGGGK--FNNVYVKNLSEAMTD 213
Q+A++ NG+ + + V + F + +A GG+ V+V+ + + +
Sbjct: 395 QSALE-MNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQSQTVFVRGFDKNLGE 453
Query: 214 DDLKKIFSEY-----GTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVD 258
D+++ E+ G T + +D + G SK F +++F+++D +KA++
Sbjct: 454 DEIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKALE 504
>Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 13/180 (7%)
Query: 99 DPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFEN 157
DP+ RK IFV L + L TF +G I CK TD SG+SKGY F+ F++
Sbjct: 161 DPAHRK-----IFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKH 215
Query: 158 EESAQNAIDNFNGKLIGDK----EVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTD 213
+ A+ K+IG++ ++ + + ++V N+S +
Sbjct: 216 RTGCRRALKQPQ-KVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDP 274
Query: 214 DDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYV 272
L + F ++G + + D GK K F ++ + A KA++ N K F+ Y
Sbjct: 275 QKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPN-KVFEGHTLYC 333
>Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 13/180 (7%)
Query: 99 DPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFEN 157
DP+ RK IFV L + L TF +G I CK TD SG+SKGY F+ F++
Sbjct: 161 DPAHRK-----IFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKH 215
Query: 158 EESAQNAIDNFNGKLIGDK----EVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTD 213
+ A+ K+IG++ ++ + + ++V N+S +
Sbjct: 216 RTGCRRALKQPQ-KVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDP 274
Query: 214 DDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYV 272
L + F ++G + + D GK K F ++ + A KA++ N K F+ Y
Sbjct: 275 QKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPN-KVFEGHTLYC 333
>Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 13/180 (7%)
Query: 99 DPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFEN 157
DP+ RK IFV L + L TF +G I CK TD SG+SKGY F+ F++
Sbjct: 161 DPAHRK-----IFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKH 215
Query: 158 EESAQNAIDNFNGKLIGDK----EVYVSHFQRKQDRENAALGGGKFNNVYVKNLSEAMTD 213
+ A+ K+IG++ ++ + + ++V N+S +
Sbjct: 216 RTGCRRALKQPQ-KVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDP 274
Query: 214 DDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVDALNGKKFDDKEWYV 272
L + F ++G + + D GK K F ++ + A KA++ N K F+ Y
Sbjct: 275 QKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPN-KVFEGHTLYC 333
>Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499515-37504601 | 20130731
Length = 280
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 201 NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDA 259
++ V N++ T DDL +F +YG + + +D G+S+ F FV ++ ADEA+KAVD
Sbjct: 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDR 76
Query: 260 LNGKKFDDKEWYV 272
L+G+ D +E V
Sbjct: 77 LDGRMVDGREITV 89
>Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499504-37504601 | 20130731
Length = 280
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 201 NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDA 259
++ V N++ T DDL +F +YG + + +D G+S+ F FV ++ ADEA+KAVD
Sbjct: 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDR 76
Query: 260 LNGKKFDDKEWYV 272
L+G+ D +E V
Sbjct: 77 LDGRMVDGREITV 89
>Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504526 | 20130731
Length = 281
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 201 NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDA 259
++ V N++ T DDL +F +YG + + +D G+S+ F FV ++ ADEA+KAVD
Sbjct: 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDR 76
Query: 260 LNGKKFDDKEWYV 272
L+G+ D +E V
Sbjct: 77 LDGRMVDGREITV 89
>Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504601 | 20130731
Length = 281
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 201 NVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDA 259
++ V N++ T DDL +F +YG + + +D G+S+ F FV ++ ADEA+KAVD
Sbjct: 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDR 76
Query: 260 LNGKKFDDKEWYV 272
L+G+ D +E V
Sbjct: 77 LDGRMVDGREITV 89
>Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567463-28562229 | 20130731
Length = 623
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 88/171 (51%), Gaps = 15/171 (8%)
Query: 102 VRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESA 161
+ SG+ +FV NL S+ + F G ++ + ++D G+ KG+G V+F + E+A
Sbjct: 358 IENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAA 417
Query: 162 QNAIDNFNGKLIGDKEVYV------SHFQRKQDRENAALGGGK--FNNVYVKNLSEAMTD 213
Q+A++ NG+ + + V + F + +A GG+ V+V+ + + +
Sbjct: 418 QSALE-MNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQSQTVFVRGFDKNLGE 476
Query: 214 DDLKKIFSEY-----GTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVD 258
D+++ E+ G T + +D + G SK F +++F+++D +KA++
Sbjct: 477 DEIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKALE 527
>Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 635
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 88/171 (51%), Gaps = 15/171 (8%)
Query: 102 VRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESA 161
+ SG+ +FV NL S+ + F G ++ + ++D G+ KG+G V+F + E+A
Sbjct: 370 IENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAA 429
Query: 162 QNAIDNFNGKLIGDKEVYV------SHFQRKQDRENAALGGGK--FNNVYVKNLSEAMTD 213
Q+A++ NG+ + + V + F + +A GG+ V+V+ + + +
Sbjct: 430 QSALE-MNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQSQTVFVRGFDKNLGE 488
Query: 214 DDLKKIFSEY-----GTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVD 258
D+++ E+ G T + +D + G SK F +++F+++D +KA++
Sbjct: 489 DEIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKALE 539
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
L+VG L + L D F+ GQVV +V D +++S GYG+V F + +A A+ +
Sbjct: 34 LFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITEM 93
Query: 82 NFTPLNGKPIRIMYSHRD 99
N LNG+ + + Y+ D
Sbjct: 94 NEKALNGRVVFVDYAKPD 111
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 101 SVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEE 159
+ R++ A +FV L K L D F +G ++ K+ TD S +SKGYGFV F +++
Sbjct: 25 TFRRAIAFKLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQD 84
Query: 160 SAQNAIDNFNGKLIGDKEVYVSH 182
A+ AI N K + + V+V +
Sbjct: 85 EAEKAITEMNEKALNGRVVFVDY 107
>Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like
protein | HC | chr5:19719748-19722666 | 20130731
Length = 170
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
+LYVG L E+N+S L+ F G + V+ D ATQ+ +G+V F +DA+ A+D
Sbjct: 11 TLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDN 70
Query: 81 LNFTPLNGKPIRIMYS 96
++ L G+ + + Y+
Sbjct: 71 MDGAELYGRVLTVNYA 86
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 17/170 (10%)
Query: 97 HRDPSVRKSGAA--NIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFV 153
H S+ GA+ IF+ L + F +G I I D +GQ +G+GF+
Sbjct: 32 HNSQSLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFI 91
Query: 154 QFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGGKFNN--VYVKNLSEAM 211
+ + I++ + +I K+V + K+ A+G F ++V + +
Sbjct: 92 TYADPSVVDKVIEDSH--IINSKQVEI-----KRTIPRGAVGSKDFRTKKIFVGGIPSNV 144
Query: 212 TDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVDAL 260
T+D+ + F+ YG + +MRD +S+ FGFV F+ + AVD L
Sbjct: 145 TEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEE----AVDDL 190
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 69/150 (46%), Gaps = 5/150 (3%)
Query: 19 PTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATAL 78
P +++G L E +Q F + G++ + +D T Q G+G++ + +P +
Sbjct: 44 PGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVI 103
Query: 79 DVLNFTPLNGKPIRIMYSHRDPSV--RKSGAANIFVKNLDKSIDHKALYDTFLVFGNILT 136
+ + +N K + I + +V + IFV + ++ D F +G +
Sbjct: 104 EDSHI--INSKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKD 161
Query: 137 CKIATDGS-GQSKGYGFVQFENEESAQNAI 165
+I D S +S+G+GFV F+ EE+ + +
Sbjct: 162 HQIMRDHSTNRSRGFGFVTFDTEEAVDDLL 191
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 55/85 (64%), Gaps = 6/85 (7%)
Query: 90 PIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSK 148
P+ M ++ +R ++ +F+ L ++D ++L D F +G+++ ++ TD +G+S+
Sbjct: 22 PVSSMLNY----LRHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSR 77
Query: 149 GYGFVQFENEESAQNAIDNFNGKLI 173
G+GFV F +EESA +A+ + +G+++
Sbjct: 78 GFGFVNFTSEESATSAL-SMDGQVV 101
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
L++G L ++D L D F G VV RV D T +S G+G+VNFT+ + A +AL +
Sbjct: 38 LFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALSM 96
>Medtr8g032590.6 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:12497703-12493893 | 20130731
Length = 294
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 24/169 (14%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFN 169
IF NLD + F +G I + + G+ F+ E+E A+ AI +
Sbjct: 4 IFCGNLDFDARQSDVERLFRKYGKIDRVDLKS-------GFAFIYMEDERDAEYAIRRLD 56
Query: 170 GKLIGDKEVYVSHFQRKQDRENAALGG---------GKFNNVYVKNLSEAMTD-DDLKKI 219
G K + K +R+N GG +++ N T DL++
Sbjct: 57 QTEFGRKGRRIRVEWTKAERDNRRSGGDSKKSSTNTKPSKTLFIINFDPVHTRTRDLERH 116
Query: 220 FSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKFDDK 268
F YG I++ + R+ F F+ FE +EA KA++A N KF D+
Sbjct: 117 FDPYGKISNLRIRRN-------FAFIQFETQEEATKALEATNLSKFMDR 158
>Medtr8g032590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:12497703-12493893 | 20130731
Length = 294
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 24/169 (14%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFN 169
IF NLD + F +G I + + G+ F+ E+E A+ AI +
Sbjct: 4 IFCGNLDFDARQSDVERLFRKYGKIDRVDLKS-------GFAFIYMEDERDAEYAIRRLD 56
Query: 170 GKLIGDKEVYVSHFQRKQDRENAALGG---------GKFNNVYVKNLSEAMTD-DDLKKI 219
G K + K +R+N GG +++ N T DL++
Sbjct: 57 QTEFGRKGRRIRVEWTKAERDNRRSGGDSKKSSTNTKPSKTLFIINFDPVHTRTRDLERH 116
Query: 220 FSEYGTITSAVVMRDVDGKSKCFGFVNFENADEAAKAVDALNGKKFDDK 268
F YG I++ + R+ F F+ FE +EA KA++A N KF D+
Sbjct: 117 FDPYGKISNLRIRRN-------FAFIQFETQEEATKALEATNLSKFMDR 158
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 16/167 (9%)
Query: 202 VYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENA---DEAAKAV 257
+++ +S ++ LK+ FS YG + + VMR+ + GK + FGFV F + D +
Sbjct: 8 LFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLEDK 67
Query: 258 DALNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANL-----YLKNLDD 312
++G+ D K + + ++ G N+ ++ L
Sbjct: 68 HVIDGRTVDAKRAF------SREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPP 121
Query: 313 NVDDEKLRELFSEFGTITSCKIMRDPH-GVSRGSGFVAFSTPEEATR 358
+ +EK R+ F +G +T +M D + G RG GF+ F T E R
Sbjct: 122 TLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDR 168
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 79/173 (45%), Gaps = 19/173 (10%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDN- 167
+F+ + + + L + F +G++L + + +G+ +G+GFV F + +++
Sbjct: 8 LFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLEDK 67
Query: 168 --FNGKLIGDKEVYVSHFQR---------KQDRENAALGGG-KFNNVYVKNLSEAMTDDD 215
+G+ + K + Q+ N+ GG + ++V L + ++
Sbjct: 68 HVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPPTLAEEK 127
Query: 216 LKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKFDD 267
++ F YG +T VVM D + G+ + FGF+ F+ + AVD + K F D
Sbjct: 128 FRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEE----AVDRVLHKTFHD 176
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 16/167 (9%)
Query: 202 VYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENA---DEAAKAV 257
+++ +S ++ LK+ FS YG + + VMR+ + GK + FGFV F + D +
Sbjct: 8 LFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLEDK 67
Query: 258 DALNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKYQGANL-----YLKNLDD 312
++G+ D K + + ++ G N+ ++ L
Sbjct: 68 HVIDGRTVDAKRAF------SREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPP 121
Query: 313 NVDDEKLRELFSEFGTITSCKIMRDPH-GVSRGSGFVAFSTPEEATR 358
+ +EK R+ F +G +T +M D + G RG GF+ F T E R
Sbjct: 122 TLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDR 168
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 79/173 (45%), Gaps = 19/173 (10%)
Query: 110 IFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAIDN- 167
+F+ + + + L + F +G++L + + +G+ +G+GFV F + +++
Sbjct: 8 LFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLEDK 67
Query: 168 --FNGKLIGDKEVYVSHFQR---------KQDRENAALGGG-KFNNVYVKNLSEAMTDDD 215
+G+ + K + Q+ N+ GG + ++V L + ++
Sbjct: 68 HVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPPTLAEEK 127
Query: 216 LKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVDALNGKKFDD 267
++ F YG +T VVM D + G+ + FGF+ F+ + AVD + K F D
Sbjct: 128 FRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEE----AVDRVLHKTFHD 176
>Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649576-48651271 | 20130731
Length = 253
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 194 LGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADE 252
G V+V L+ D L++ F +YG I AV++ D V G+SK +GFV F++AD
Sbjct: 12 FGDTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADS 71
Query: 253 AAKAVD----ALNGKK 264
A KA + +NG++
Sbjct: 72 AKKACEEPTVIINGRR 87
>Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649613-48651189 | 20130731
Length = 256
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 194 LGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADE 252
G V+V L+ D L++ F +YG I AV++ D V G+SK +GFV F++AD
Sbjct: 12 FGDTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADS 71
Query: 253 AAKAVD----ALNGKK 264
A KA + +NG++
Sbjct: 72 AKKACEEPTVIINGRR 87
>Medtr4g117350.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:48659959-48661848 | 20130731
Length = 162
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 107 AANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAI 165
+ IF+K L S L F +FG + K+ D +GQS G+ ++ F E+SAQ+A
Sbjct: 70 STKIFIKGLPLSTTELHLTKVFSMFGEVTQVKLLIDKKTGQSLGFAYIWFVEEDSAQSAA 129
Query: 166 DNFNGKLIGDKEVYVS 181
NGKL + +YV+
Sbjct: 130 KEMNGKLFYGRFIYVT 145
>Medtr8g107310.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:45339610-45341085 | 20130731
Length = 292
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 200 NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFGFVNFENADEAAKAVD 258
N+V V NLSE + DL ++F +G ++ V D G S+ FGFVNF + ++A +A++
Sbjct: 211 NSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVSREDAQRAIN 270
Query: 259 ALNGKKFDD 267
LNG +D+
Sbjct: 271 KLNGYGYDN 279
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 49/81 (60%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
L V + +++ L + F++ G+V+ R+ D T +S G+G++ F + ++A++A+ L
Sbjct: 52 LSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQAL 111
Query: 82 NFTPLNGKPIRIMYSHRDPSV 102
+ L+G+ +R+ Y++ P V
Sbjct: 112 DGQDLHGRRVRVNYANERPRV 132
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 200 NNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRD-VDGKSKCFGFVNFENADEAAKAVD 258
N++V LS+ T + L++ F ++G + A V+ D V G SK FGFV + ++AAK ++
Sbjct: 51 TNLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGIE 110
Query: 259 ALNGK 263
++GK
Sbjct: 111 GMDGK 115
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 107 AANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAI 165
+ N+FV L K + L + F FG ++ ++ TD SG SKG+GFV++ E A I
Sbjct: 50 STNLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGI 109
Query: 166 DNFNGKLIGDKEVYVSHFQRKQDRENAAL 194
+ +GK + + V + + R + A+
Sbjct: 110 EGMDGKFL-EGWVIFAEYARPRPPPGEAV 137
>Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 362
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 6/153 (3%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
L+VG + + + +L LF + V V + +D AT+ S G +V + +A A++
Sbjct: 18 LFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 77
Query: 82 N---FTPLNGKPIRIMYSHRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTCK 138
+ P P+++ Y+ D + + +F+ L K+I + F +G I +
Sbjct: 78 HNKKTLPGASSPLQVKYA--DGELERL-EHKLFIGMLPKNISEVEVSALFSKYGTIKDLQ 134
Query: 139 IATDGSGQSKGYGFVQFENEESAQNAIDNFNGK 171
I SKG F+++E +E A A++ NGK
Sbjct: 135 ILRGSQQTSKGCAFLKYETKEQALAALEAINGK 167
>Medtr1g101520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:45856698-45851996 | 20130731
Length = 388
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 87/188 (46%), Gaps = 32/188 (17%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATA--- 77
+++ G+ + + +S+L LF + G+V V D+ G+ ++ + +DA A
Sbjct: 3 AIFCGNFEYDCRESELERLFRRYGKVDRV----DMKA----GFAFIYMEDERDAEAAIRA 54
Query: 78 LDVLNFTPLNGKPIRIMYSHRDPSVR------KSGAAN------IFVKNLDK-SIDHKAL 124
LD + F G+ +R+ ++ ++ VR K +AN +FV N D + L
Sbjct: 55 LDRIEFG-RKGRRLRVEWTKQERGVRRPAERPKRSSANARPSKTLFVINFDTYQTRTRDL 113
Query: 125 YDTFLVFGNILTCKIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQ 184
F +G I++ +I K + FVQ+E+E+ A A++ N + D+ + V
Sbjct: 114 ERHFEPYGKIVSVRI-------RKNFAFVQYESEDDACKALEATNNSKLMDRVISVEFAA 166
Query: 185 RKQDRENA 192
R DR N
Sbjct: 167 RDDDRRNG 174
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 111 FVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFN 169
FV L + D++AL F +G I+ KI D +G+S+G+GFV F NE+S +AI+ N
Sbjct: 9 FVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAMN 68
Query: 170 GKLIGDKEVYVSHFQ 184
G+ + + + V+ Q
Sbjct: 69 GQDLDGRNITVNQAQ 83
>Medtr1g054675.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:23814162-23811233 | 20130731
Length = 220
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%)
Query: 18 MPTSLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATA 77
+PTSL V +L + L+D F Q G V V + RD T + G+G+V F +P DAA A
Sbjct: 41 LPTSLLVRNLAKDCRPEDLHDPFGQFGPVKDVYLPRDYYTGEPRGFGFVQFVDPADAADA 100
>Medtr3g086380.1 | RNA recognition motif 1 in terminal EAR1-like
protein, putative | HC | chr3:39136472-39139376 |
20130731
Length = 524
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 114/281 (40%), Gaps = 44/281 (15%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDV 80
+L V +LD +++ QL +F G + VR QS +V F + +DA AL
Sbjct: 153 TLVVFNLDDDVSSDQLQQVFGAFGAIKEVRDTPWKKRNQS----FVEFFDIRDAEKALKE 208
Query: 81 LNFTPLNGKPIRIMYS-----HRDPSVRKSGAANIFVKNLDKSIDHK----------ALY 125
LN +NGKPI I +S H +P+ S F NL+ + L
Sbjct: 209 LNGKEINGKPIAIEFSKPKLFHSEPNAYISNKP--FNYNLNPPPSPRRHFASQPHSPQLS 266
Query: 126 DTFLVFGNILTCKIATDGS--GQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHF 183
L F + +I + GS G+ + Y FV+ ++ ES + ++ GKL E + F
Sbjct: 267 HKSLTFNRVNHNRIGSMGSLKGEER-YPFVRVQSRESFGESAWSWKGKLAKRHE---NRF 322
Query: 184 QRKQDR-----ENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYG---TITSA-VVMRD 234
K+D L N Y + L M D+ + G ++S V
Sbjct: 323 LIKEDAIVESDPRTTLMIKNIPNKYSQKLLLNMLDNHCVHCNEQLGDGEPLSSYDFVYLP 382
Query: 235 VDGKSKC---FGFVNFENADEAAKAVDALNGKKFDDKEWYV 272
+D K+KC +GFVN + + + K F + W V
Sbjct: 383 IDFKNKCNVGYGFVNMTSPEATLRFY-----KAFQHQHWEV 418
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 111 FVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFN 169
FV L + D++AL F +G I+ KI D +G+S+G+GFV F NE+S +AI+ N
Sbjct: 9 FVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAMN 68
Query: 170 GKLIGDKEVYVSHFQ 184
G+ + + + V+ Q
Sbjct: 69 GQDLDGRNITVNQAQ 83
>Medtr3g448370.5 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16171071-16165361 | 20130731
Length = 876
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 95/208 (45%), Gaps = 24/208 (11%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQ-QSLGYGYVNFTNPKDAATALD 79
+L+V ++++ + DS+L LF Q G + R L T + G+ +++ + + A TA+
Sbjct: 199 TLFVRNINSNVEDSELRTLFEQYGDI------RTLYTACKHRGFVMISYYDIRAARTAMR 252
Query: 80 VLNFTPLNGKPIRIMYS--HRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTC 137
L PL + + I +S +PS + + V NLD S+ + L F +G +
Sbjct: 253 ALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEI 312
Query: 138 KIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGG 197
+ + + + F++F + +A A+ N I K + + E + GG
Sbjct: 313 R----ETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKL---------EPSRPGGA 359
Query: 198 KFNNVYVKNLSEAMTDDDLKKIFSEYGT 225
+ N ++ LS+ + D+ + S+ G+
Sbjct: 360 RRN--LMQQLSQELEQDEARTFRSQVGS 385
>Medtr3g448370.2 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16171071-16165028 | 20130731
Length = 853
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 94/208 (45%), Gaps = 24/208 (11%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSV-RVCRDLATQQSLGYGYVNFTNPKDAATALD 79
+L+V ++++ + DS+L LF Q G + ++ C+ G+ +++ + + A TA+
Sbjct: 196 TLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKH------RGFVMISYYDIRAARTAMR 249
Query: 80 VLNFTPLNGKPIRIMYS--HRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTC 137
L PL + + I +S +PS + + V NLD S+ + L F +G +
Sbjct: 250 ALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEI 309
Query: 138 KIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGG 197
+ + + F++F + +A A+ N I K + + E + GG
Sbjct: 310 RETP----HKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKL---------EPSRPGGA 356
Query: 198 KFNNVYVKNLSEAMTDDDLKKIFSEYGT 225
+ N ++ LS+ + D+ + S+ G+
Sbjct: 357 RRN--LMQQLSQELEQDEARTFRSQVGS 382
>Medtr3g448370.3 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16170586-16165028 | 20130731
Length = 751
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 94/208 (45%), Gaps = 24/208 (11%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSV-RVCRDLATQQSLGYGYVNFTNPKDAATALD 79
+L+V ++++ + DS+L LF Q G + ++ C+ G+ +++ + + A TA+
Sbjct: 94 TLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKH------RGFVMISYYDIRAARTAMR 147
Query: 80 VLNFTPLNGKPIRIMYS--HRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTC 137
L PL + + I +S +PS + + V NLD S+ + L F +G +
Sbjct: 148 ALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEI 207
Query: 138 KIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGG 197
+ + + F++F + +A A+ N I K + + E + GG
Sbjct: 208 RETP----HKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKL---------EPSRPGGA 254
Query: 198 KFNNVYVKNLSEAMTDDDLKKIFSEYGT 225
+ N ++ LS+ + D+ + S+ G+
Sbjct: 255 RRN--LMQQLSQELEQDEARTFRSQVGS 280
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 111 FVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFN 169
FV L + D +AL F FG I K+ D +G+S+G+GFV F E+S ++AI+ N
Sbjct: 11 FVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEEMN 70
Query: 170 GKLIGDKEVYVSHFQ 184
G+ I + + V+ Q
Sbjct: 71 GQDIDGRNITVNEAQ 85
>Medtr3g448370.1 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16171071-16165028 | 20130731
Length = 856
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 94/208 (45%), Gaps = 24/208 (11%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSV-RVCRDLATQQSLGYGYVNFTNPKDAATALD 79
+L+V ++++ + DS+L LF Q G + ++ C+ G+ +++ + + A TA+
Sbjct: 199 TLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKH------RGFVMISYYDIRAARTAMR 252
Query: 80 VLNFTPLNGKPIRIMYS--HRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTC 137
L PL + + I +S +PS + + V NLD S+ + L F +G +
Sbjct: 253 ALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEI 312
Query: 138 KIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGG 197
+ + + F++F + +A A+ N I K + + E + GG
Sbjct: 313 RETP----HKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKL---------EPSRPGGA 359
Query: 198 KFNNVYVKNLSEAMTDDDLKKIFSEYGT 225
+ N ++ LS+ + D+ + S+ G+
Sbjct: 360 RRN--LMQQLSQELEQDEARTFRSQVGS 385
>Medtr3g448370.4 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16172198-16165028 | 20130731
Length = 867
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 94/208 (45%), Gaps = 24/208 (11%)
Query: 21 SLYVGDLDTEINDSQLYDLFNQIGQVVSV-RVCRDLATQQSLGYGYVNFTNPKDAATALD 79
+L+V ++++ + DS+L LF Q G + ++ C+ G+ +++ + + A TA+
Sbjct: 210 TLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKH------RGFVMISYYDIRAARTAMR 263
Query: 80 VLNFTPLNGKPIRIMYS--HRDPSVRKSGAANIFVKNLDKSIDHKALYDTFLVFGNILTC 137
L PL + + I +S +PS + + V NLD S+ + L F +G +
Sbjct: 264 ALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEI 323
Query: 138 KIATDGSGQSKGYGFVQFENEESAQNAIDNFNGKLIGDKEVYVSHFQRKQDRENAALGGG 197
+ + + F++F + +A A+ N I K + + E + GG
Sbjct: 324 RETP----HKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKL---------EPSRPGGA 370
Query: 198 KFNNVYVKNLSEAMTDDDLKKIFSEYGT 225
+ N ++ LS+ + D+ + S+ G+
Sbjct: 371 RRN--LMQQLSQELEQDEARTFRSQVGS 396
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 111 FVKNLDKSIDHKALYDTFLVFGNILTCKIATDG-SGQSKGYGFVQFENEESAQNAIDNFN 169
FV L + D +AL F +G I+ KI D +G+S+G+GFV F +E+S ++AI+ N
Sbjct: 11 FVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEGMN 70
Query: 170 GKLIGDKEVYVSHFQ 184
G+ + + + V+ Q
Sbjct: 71 GQDMDGRNITVNEAQ 85
>Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:40168782-40171275 | 20130731
Length = 141
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 107 AANIFVKNLDKSIDHKALYDTFLVFGNILTCKIATD-GSGQSKGYGFVQFENEESAQNAI 165
+ +F+ L + + L + F FG +L K+ TD GSG+SKG+ FV + E A+ A
Sbjct: 34 SPKLFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAEKAR 93
Query: 166 DNFNGKLIGDKEVYVSHFQRKQDR 189
+ N K + ++V + ++ R
Sbjct: 94 EGMNAKFLDGWVIFVDPAKPREPR 117
>Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 134
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 200 NNVYVKNLSEAMTDDDLKKIFSEYGTITSA-VVMRDVDGKSKCFGFVNFENADEAAKAVD 258
+ ++VK L+ + T++ L + FS+YG + A +V+ + K FG+V F +EA KA
Sbjct: 32 SKIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQI 91
Query: 259 ALNGKKFDDKEWYV 272
+NGK + YV
Sbjct: 92 GMNGKILHGRVLYV 105
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 46/75 (61%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
L++G + +++ L + F++ G V+ ++ D T +S G+G++ F ++A++AL +
Sbjct: 42 LFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQAM 101
Query: 82 NFTPLNGKPIRIMYS 96
+ L+G+ +R+ Y+
Sbjct: 102 DNKELDGRTVRVNYA 116
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 46/75 (61%)
Query: 22 LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQSLGYGYVNFTNPKDAATALDVL 81
L++G + +++ L + F++ G V+ ++ D T +S G+G++ F ++A++AL +
Sbjct: 42 LFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQAM 101
Query: 82 NFTPLNGKPIRIMYS 96
+ L+G+ +R+ Y+
Sbjct: 102 DNKELDGRTVRVNYA 116
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 81/174 (46%), Gaps = 27/174 (15%)
Query: 185 RKQDRENAALGGGKFNNVYVKNLSEAMTDDDLKKIFSEYGTITSAVVMRDVD-GKSKCFG 243
RK D ++ G +++ L++ T ++ K F YG IT +V+M+D G+ + FG
Sbjct: 4 RKSDNPHSGDGASP-GKIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFG 62
Query: 244 FVNFENA---DEAAKAVDALNGKKFDDKEWYVGXXXXXXXXXXXXXXQHEQSMQETVDKY 300
F+ + +A D+ + +N K+ + K + +T D +
Sbjct: 63 FITYADASVVDQVIQENHIINDKQVEIKRTI------------------PKGASQTND-F 103
Query: 301 QGANLYLKNLDDNVDDEKLRELFSEFGTITSCKIMRDPHGV--SRGSGFVAFST 352
+ +++ + V +++L+ FS+ G + +I+RD H SRG GFV F +
Sbjct: 104 KTKKIFVGGIPATVSEDELKIFFSKHGNVVEHEIIRD-HTTKRSRGFGFVVFDS 156
>Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 87/196 (44%), Gaps = 14/196 (7%)
Query: 1 MAQIHETDAVAQEANQPMPTS-LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQ 59
A E QE + + T+ L ++ + LF + G+V+ V + +
Sbjct: 69 FASTSEQQVTTQEQTEELSTTRLLAQNVPWSSTTEDVRSLFEKYGKVLHVELSM-YNKNR 127
Query: 60 SLGYGYVNFTNPKDAATALDVLNFTPLNGKPIRIMYSHRDPSV------RKSGAANIFVK 113
+ G +V +P++A+ AL+ L +G+ I I Y+ RK N+FV
Sbjct: 128 NRGLAFVEMGSPEEASEALNSLQSYEFDGRIINIQYAKPKKEKIPPPVERKPITYNLFVA 187
Query: 114 NLD---KSIDHKALYDTFLVFGNILTCK-IATDGSGQSKGYGFVQFENEESAQNAIDNFN 169
N +S D K +D+ G +++ + I + + GYGFV +++++ A A+ F
Sbjct: 188 NFPYEARSKDVKEFFDSGT--GKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEALAEFQ 245
Query: 170 GKLIGDKEVYVSHFQR 185
GK + + V+ +R
Sbjct: 246 GKNFMGRPLRVAPSKR 261
>Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 87/196 (44%), Gaps = 14/196 (7%)
Query: 1 MAQIHETDAVAQEANQPMPTS-LYVGDLDTEINDSQLYDLFNQIGQVVSVRVCRDLATQQ 59
A E QE + + T+ L ++ + LF + G+V+ V + +
Sbjct: 69 FASTSEQQVTTQEQTEELSTTRLLAQNVPWSSTTEDVRSLFEKYGKVLHVELSM-YNKNR 127
Query: 60 SLGYGYVNFTNPKDAATALDVLNFTPLNGKPIRIMYSHRDPSV------RKSGAANIFVK 113
+ G +V +P++A+ AL+ L +G+ I I Y+ RK N+FV
Sbjct: 128 NRGLAFVEMGSPEEASEALNSLQSYEFDGRIINIQYAKPKKEKIPPPVERKPITYNLFVA 187
Query: 114 NLD---KSIDHKALYDTFLVFGNILTCK-IATDGSGQSKGYGFVQFENEESAQNAIDNFN 169
N +S D K +D+ G +++ + I + + GYGFV +++++ A A+ F
Sbjct: 188 NFPYEARSKDVKEFFDSGT--GKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEALAEFQ 245
Query: 170 GKLIGDKEVYVSHFQR 185
GK + + V+ +R
Sbjct: 246 GKNFMGRPLRVAPSKR 261