Miyakogusa Predicted Gene

Lj0g3v0238659.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0238659.1 Non Characterized Hit- tr|D8TAB8|D8TAB8_SELML
Putative uncharacterized protein OS=Selaginella
moelle,50,0.000000000000005,seg,NULL,CUFF.15650.1
         (166 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g083500.2 | mediator of RNA polymerase II transcription su...   290   5e-79
Medtr3g083500.1 | mediator of RNA polymerase II transcription su...   290   5e-79

>Medtr3g083500.2 | mediator of RNA polymerase II transcription
           subunit 13 | HC | chr3:37686050-37663910 | 20130731
          Length = 1942

 Score =  290 bits (741), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 136/165 (82%), Positives = 141/165 (85%)

Query: 1   MWTNVFKLGGLHQISWFQFLPHEPDLNPLPDKSSKVDQKDAAMLLVLQSHLQLQKEGFLS 60
           MWTNVFK+G LHQISWFQFLPHEPDLNPLPDKS K DQKDAAML+VL SHLQLQKEGFLS
Sbjct: 1   MWTNVFKIGSLHQISWFQFLPHEPDLNPLPDKSVKADQKDAAMLVVLSSHLQLQKEGFLS 60

Query: 61  TWTNSFVGPWDPSQGLHNPDEKIKLWLFLPGRHSSVVETAQPAVSGLRVVASGLWLAPGD 120
            WTNSFVGPWDPSQGLHNPDEKIKLWLFLPGRH +V ETAQPA++GLR VASGLWLAPGD
Sbjct: 61  AWTNSFVGPWDPSQGLHNPDEKIKLWLFLPGRHLTVSETAQPALTGLRAVASGLWLAPGD 120

Query: 121 XXXXXXXXXXXXRNRIERALLGLYYMRFGDVFSKFHQFQSEELFR 165
                       RN IERALLGLYYMRFGDVF K HQFQSEEL R
Sbjct: 121 SEEVAAALSQALRNCIERALLGLYYMRFGDVFLKVHQFQSEELLR 165


>Medtr3g083500.1 | mediator of RNA polymerase II transcription
           subunit 13 | HC | chr3:37686039-37663914 | 20130731
          Length = 1942

 Score =  290 bits (741), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 136/165 (82%), Positives = 141/165 (85%)

Query: 1   MWTNVFKLGGLHQISWFQFLPHEPDLNPLPDKSSKVDQKDAAMLLVLQSHLQLQKEGFLS 60
           MWTNVFK+G LHQISWFQFLPHEPDLNPLPDKS K DQKDAAML+VL SHLQLQKEGFLS
Sbjct: 1   MWTNVFKIGSLHQISWFQFLPHEPDLNPLPDKSVKADQKDAAMLVVLSSHLQLQKEGFLS 60

Query: 61  TWTNSFVGPWDPSQGLHNPDEKIKLWLFLPGRHSSVVETAQPAVSGLRVVASGLWLAPGD 120
            WTNSFVGPWDPSQGLHNPDEKIKLWLFLPGRH +V ETAQPA++GLR VASGLWLAPGD
Sbjct: 61  AWTNSFVGPWDPSQGLHNPDEKIKLWLFLPGRHLTVSETAQPALTGLRAVASGLWLAPGD 120

Query: 121 XXXXXXXXXXXXRNRIERALLGLYYMRFGDVFSKFHQFQSEELFR 165
                       RN IERALLGLYYMRFGDVF K HQFQSEEL R
Sbjct: 121 SEEVAAALSQALRNCIERALLGLYYMRFGDVFLKVHQFQSEELLR 165