Miyakogusa Predicted Gene

Lj0g3v0238359.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0238359.1 Non Characterized Hit- tr|J3LVQ7|J3LVQ7_ORYBR
Uncharacterized protein OS=Oryza brachyantha GN=OB04G1,41.51,1e-18,no
description,HIP116, Rad5p N-terminal; HIRAN,HIP116, Rad5p
N-terminal,CUFF.15629.1
         (260 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g084630.1 | DNA/RNA helicase | HC | chr2:35865804-35875314...   363   e-101
Medtr2g084630.2 | DNA/RNA helicase | HC | chr2:35865773-35875405...   363   e-101
Medtr1g044120.1 | DNA repair helicase rad5,16, putative | HC | c...    81   1e-15

>Medtr2g084630.1 | DNA/RNA helicase | HC | chr2:35865804-35875314 |
           20130731
          Length = 1022

 Score =  363 bits (933), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/266 (70%), Positives = 210/266 (78%), Gaps = 14/266 (5%)

Query: 1   MGSKVSDHHLSTVRSIVGPEFTDMEIIRALHMAKNDVTAAINIIFDTQ-THTPKSKPTRS 59
           MGSKV+D +LSTVRSIVG EFTDMEIIRALH+AKNDVT+AINIIFDTQ    PKS P   
Sbjct: 1   MGSKVTDPNLSTVRSIVGSEFTDMEIIRALHLAKNDVTSAINIIFDTQRVSLPKSTPR-- 58

Query: 60  TATKPRRVSPPKSTPNAV--AAITDIDGGASS--------SCPVGPDDWWFVGCGEVAGV 109
            A+  +R SPP STP AV   A+T      S+        S  +   DWWFVG GEVAG+
Sbjct: 59  -ASNTQRGSPPNSTPRAVVPGAVTATATSKSNANAENNKCSVELESKDWWFVGSGEVAGL 117

Query: 110 ATCKGRTVKSGDAVVFRFPNKKPSASPSTAKGFGRAAATCTEIVRFSTEPAGEIGRIPNE 169
           +TCKGR +K+GD V+F+FP KK S SPS  KGFGRAAA+C+EIVRFS E   EIGRIPNE
Sbjct: 118 STCKGRNIKAGDKVIFKFPPKKVSVSPSPGKGFGRAAASCSEIVRFSNEQDWEIGRIPNE 177

Query: 170 WARCLLPLVRDNKVKVEGLCKFAPDVLGIMDTIALSVSVFINRSMFVKRHQVSLKDATSS 229
           WARCLLPLVRDNKV+VEG C+FAP+VLGIMD+I LS+SVFINRSMFVK HQVSLKDAT+S
Sbjct: 178 WARCLLPLVRDNKVRVEGKCEFAPNVLGIMDSINLSISVFINRSMFVKHHQVSLKDATNS 237

Query: 230 TDESVFHPLPTLFRLLGLSPFKKHHL 255
           TDESVFHPLP LFRLLGLSPFKK  L
Sbjct: 238 TDESVFHPLPALFRLLGLSPFKKAEL 263


>Medtr2g084630.2 | DNA/RNA helicase | HC | chr2:35865773-35875405 |
           20130731
          Length = 1025

 Score =  363 bits (933), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/266 (70%), Positives = 210/266 (78%), Gaps = 14/266 (5%)

Query: 1   MGSKVSDHHLSTVRSIVGPEFTDMEIIRALHMAKNDVTAAINIIFDTQ-THTPKSKPTRS 59
           MGSKV+D +LSTVRSIVG EFTDMEIIRALH+AKNDVT+AINIIFDTQ    PKS P   
Sbjct: 1   MGSKVTDPNLSTVRSIVGSEFTDMEIIRALHLAKNDVTSAINIIFDTQRVSLPKSTPR-- 58

Query: 60  TATKPRRVSPPKSTPNAV--AAITDIDGGASS--------SCPVGPDDWWFVGCGEVAGV 109
            A+  +R SPP STP AV   A+T      S+        S  +   DWWFVG GEVAG+
Sbjct: 59  -ASNTQRGSPPNSTPRAVVPGAVTATATSKSNANAENNKCSVELESKDWWFVGSGEVAGL 117

Query: 110 ATCKGRTVKSGDAVVFRFPNKKPSASPSTAKGFGRAAATCTEIVRFSTEPAGEIGRIPNE 169
           +TCKGR +K+GD V+F+FP KK S SPS  KGFGRAAA+C+EIVRFS E   EIGRIPNE
Sbjct: 118 STCKGRNIKAGDKVIFKFPPKKVSVSPSPGKGFGRAAASCSEIVRFSNEQDWEIGRIPNE 177

Query: 170 WARCLLPLVRDNKVKVEGLCKFAPDVLGIMDTIALSVSVFINRSMFVKRHQVSLKDATSS 229
           WARCLLPLVRDNKV+VEG C+FAP+VLGIMD+I LS+SVFINRSMFVK HQVSLKDAT+S
Sbjct: 178 WARCLLPLVRDNKVRVEGKCEFAPNVLGIMDSINLSISVFINRSMFVKHHQVSLKDATNS 237

Query: 230 TDESVFHPLPTLFRLLGLSPFKKHHL 255
           TDESVFHPLP LFRLLGLSPFKK  L
Sbjct: 238 TDESVFHPLPALFRLLGLSPFKKAEL 263


>Medtr1g044120.1 | DNA repair helicase rad5,16, putative | HC |
           chr1:16509136-16515621 | 20130731
          Length = 1153

 Score = 80.9 bits (198), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/162 (33%), Positives = 80/162 (49%), Gaps = 15/162 (9%)

Query: 92  PVGPDDWWFVGCGEVAGVATCKG-RTVKSGDAVVFRFPNKKPSASPSTAKGFGRAAATCT 150
           PV P  W  +G       +T KG R +   + + F FPN      P T+  F        
Sbjct: 245 PVEPG-WSLLGRKIEIATSTAKGVRRLVDNEIIYFDFPN------PHTSYKF-------Q 290

Query: 151 EIVRFSTEPAGEIGRIPNEWARCLLPLVRDNKVKVEGLCKFAPDVLGIMDTIALSVSVFI 210
            IVR ST+ +G +GR+P EWA+ ++PLV+   VKV G C   P  L +M  I L VS ++
Sbjct: 291 WIVRVSTKRSGVVGRLPMEWAKSVIPLVQSGNVKVRGRCIATPYKLEMMQEIMLLVSFYV 350

Query: 211 NRSMFVKRHQVSLKDATSSTDESVFHPLPTLFRLLGLSPFKK 252
           + S+F +    S +        S  +PL TL  +L + P++K
Sbjct: 351 HHSVFSESVDTSWRLEACGNVNSAAYPLLTLLNMLEIEPYRK 392