Miyakogusa Predicted Gene

Lj0g3v0238209.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0238209.1 tr|B6TTK7|B6TTK7_MAIZE Actin associated protein
OS=Zea mays PE=2 SV=1,39.87,3e-18,seg,NULL,CUFF.15615.1
         (123 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g127810.1 | hydroxyproline-rich glycoprotein family protei...   120   2e-28

>Medtr4g127810.1 | hydroxyproline-rich glycoprotein family protein |
           HC | chr4:53153847-53156561 | 20130731
          Length = 138

 Score =  120 bits (301), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/120 (55%), Positives = 71/120 (59%), Gaps = 5/120 (4%)

Query: 1   MAVNSESTPPP-VIGKIGPYTVFMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV- 58
           M++N ESTPPP VIGKIGPYTVFM                                  + 
Sbjct: 1   MSLNGESTPPPPVIGKIGPYTVFMTPPSTPKPSSSSDPVALHSPKPINNAKIAPPPPQIH 60

Query: 59  ---PSSAKSFSDGSVSGFFRNAVTKVHNAHSSLDDHLARWFGLNQSKYQWALDDYYESKG 115
              PSS    SD SV GFF+NAV KV  AHSSLDDHLARWFGLNQSKYQWALDDYYE+KG
Sbjct: 61  TPLPSSKTLSSDASVLGFFKNAVNKVQTAHSSLDDHLARWFGLNQSKYQWALDDYYETKG 120