Miyakogusa Predicted Gene

Lj0g3v0236509.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0236509.1 Non Characterized Hit- tr|H2XT65|H2XT65_CIOIN
Uncharacterized protein (Fragment) OS=Ciona
intestinal,45.9,5e-19,FAD/NAD(P)-binding domain,NULL; FAD
OXIDOREDUCTASE,NULL; FAD NAD BINDING OXIDOREDUCTASES,NULL;
DAO,F,CUFF.15488.1
         (159 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g094962.1 | FAD-dependent oxidoreductase | HC | chr4:39394...   203   6e-53
Medtr8g072720.1 | FAD-dependent oxidoreductase | HC | chr8:30754...   131   3e-31

>Medtr4g094962.1 | FAD-dependent oxidoreductase | HC |
           chr4:39394718-39392196 | 20130731
          Length = 406

 Score =  203 bits (516), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 103/123 (83%), Positives = 113/123 (91%)

Query: 36  SGEVYVCGMSSEEEVPDDRDEIRGKPESIEMLKRVAKTVSSHLGEETVKAEQACFLPCTD 95
           +GEVYVCGMS EEEVPDD +EIRG  ESI MLKRVAKTVSSHLGEE VK EQACFLPCTD
Sbjct: 283 TGEVYVCGMSKEEEVPDDPEEIRGNEESIAMLKRVAKTVSSHLGEEGVKVEQACFLPCTD 342

Query: 96  DGVPVIGEVPGIKGCYVATGHNCWGILNGPATGGAMAELIIDGNSSIVDLKRFSPARFVA 155
           DGVP+IGEVPG+KGCYVATGH+CWGILNGPATG A+AEL++DG+S+IVDLKRFSPARFV 
Sbjct: 343 DGVPIIGEVPGVKGCYVATGHSCWGILNGPATGAAVAELVLDGHSTIVDLKRFSPARFVG 402

Query: 156 PTK 158
            TK
Sbjct: 403 RTK 405


>Medtr8g072720.1 | FAD-dependent oxidoreductase | HC |
           chr8:30754461-30754156 | 20130731
          Length = 101

 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/71 (85%), Positives = 65/71 (91%), Gaps = 1/71 (1%)

Query: 57  IRGKPESIEMLKRVAKTVSSHLGEETVKAEQACFLPCTDDGVPVIGEVPGIKGCYVATGH 116
           IRG  ESI MLKRVAKTVSSHLGE  VK EQACFLPCTDDGVP+IGE+PG+KGCYVATGH
Sbjct: 32  IRGNSESIAMLKRVAKTVSSHLGE-GVKVEQACFLPCTDDGVPIIGEIPGVKGCYVATGH 90

Query: 117 NCWGILNGPAT 127
           +CWGILNGPAT
Sbjct: 91  SCWGILNGPAT 101