Miyakogusa Predicted Gene
- Lj0g3v0236409.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0236409.1 tr|G7LG09|G7LG09_MEDTR DNA-directed RNA
polymerase OS=Medicago truncatula GN=MTR_8g038990 PE=3
SV=1,85.68,0,DNA-DIRECTED RNA POLYMERASE,NULL; beta and beta-prime
subunits of DNA dependent RNA-polymerase,NULL;,CUFF.15483.1
(435 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g038990.1 | DNA-directed RNA polymerase | HC | chr8:144590... 764 0.0
Medtr8g066100.1 | DNA-directed RNA polymerase, putative | HC | c... 264 1e-70
Medtr5g011000.1 | DNA-directed RNA polymerase | HC | chr5:306076... 156 3e-38
Medtr5g023020.1 | DNA-directed RNA polymerase | HC | chr5:913015... 116 4e-26
Medtr4g061700.1 | DNA-directed RNA polymerase I protein | HC | c... 112 8e-25
Medtr4g061800.1 | DNA-directed RNA polymerase I protein | HC | c... 107 2e-23
Medtr4g086290.2 | DNA-directed RNA polymerase I protein | HC | c... 104 2e-22
Medtr4g086290.1 | DNA-directed RNA polymerase I protein | HC | c... 104 2e-22
Medtr0002s0510.1 | DNA-directed RNA polymerase subunit beta | LC... 74 2e-13
Medtr4g051130.1 | DNA-directed RNA polymerase subunit beta | HC ... 71 2e-12
Medtr3g062790.1 | DNA-directed RNA polymerase subunit beta | HC ... 71 2e-12
Medtr3g062770.1 | DNA-directed RNA polymerase subunit beta | HC ... 71 2e-12
Medtr8g016510.1 | DNA-directed RNA polymerase subunit beta | HC ... 58 2e-08
>Medtr8g038990.1 | DNA-directed RNA polymerase | HC |
chr8:14459096-14475944 | 20130731
Length = 2010
Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/433 (85%), Positives = 407/433 (93%)
Query: 1 MSSDPSMTFLRKLLRKVEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQIRGCAKPARDI 60
MSSDP++T LRKLLRKVE+IRSSRSGEPNFESH+VEANDLQSVVDQYLQIRG +K ARDI
Sbjct: 256 MSSDPALTILRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGTSKAARDI 315
Query: 61 ETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRI 120
ETH+GVNKEL+D+S KAWL+KM++LFI KGSGFSSR+VITGDGYK+INEVGIPLE+AQRI
Sbjct: 316 ETHYGVNKELNDSSTKAWLEKMRTLFIRKGSGFSSRNVITGDGYKKINEVGIPLEVAQRI 375
Query: 121 TFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDI 180
TFEERV++HN+ +LQKLVDENLCL YKEG+STYSLREGSKGHTYLKPGQIVHRRIMDGD
Sbjct: 376 TFEERVSIHNIHYLQKLVDENLCLTYKEGMSTYSLREGSKGHTYLKPGQIVHRRIMDGDT 435
Query: 181 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 240
VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV
Sbjct: 436 VFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV 495
Query: 241 VELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKGFMDRAAANQLAMFLSLPLPRPAL 300
+ELFSVEKQLLSSHSGNLNLQLS DSLLSLKMLVK F+DR AANQ+AMFL LPLP PAL
Sbjct: 496 LELFSVEKQLLSSHSGNLNLQLSADSLLSLKMLVKSCFLDRVAANQMAMFLLLPLPMPAL 555
Query: 301 LKAGSGDSYWTSIQILQCALPLSFDCTGGRYLIRQSDILEFDLSRDVLPAVINEIAASVF 360
LKA +GDSYWTSIQILQCALP SFDCTGGRYLIRQ +ILEFD +RD+LP++INEIAAS+F
Sbjct: 556 LKATTGDSYWTSIQILQCALPFSFDCTGGRYLIRQREILEFDFTRDILPSIINEIAASIF 615
Query: 361 FGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLR 420
F KGPQEALNFFDV+QP LME+IF++GFSVGL DFSIS AVKRV +R+IGKVSPLL QLR
Sbjct: 616 FSKGPQEALNFFDVIQPFLMENIFAHGFSVGLQDFSISRAVKRVINRSIGKVSPLLRQLR 675
Query: 421 FIYNELVAQQLEK 433
+Y ELVAQQLEK
Sbjct: 676 GMYKELVAQQLEK 688
>Medtr8g066100.1 | DNA-directed RNA polymerase, putative | HC |
chr8:27456109-27455340 | 20130731
Length = 245
Score = 264 bits (675), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 132/178 (74%), Positives = 150/178 (84%), Gaps = 1/178 (0%)
Query: 80 DKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVD 139
+KM++LFI KGSGFSSR+VITGDGYK+INEVGIPLE+AQRITFEERV++ N+ +LQKLVD
Sbjct: 48 EKMRTLFIRKGSGFSSRTVITGDGYKKINEVGIPLEVAQRITFEERVSILNIHYLQKLVD 107
Query: 140 ENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVV 199
ENLCL YKEG+STYSLREGSKGHTYLKPGQIVH + G I+F + + +
Sbjct: 108 ENLCLTYKEGMSTYSLREGSKGHTYLKPGQIVHGGLWTG-ILFSSTDCQLPTSTPCKRLW 166
Query: 200 YIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGN 257
YI VKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV+ELFSVEKQLLSS+SGN
Sbjct: 167 YISMTTRVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSYSGN 224
>Medtr5g011000.1 | DNA-directed RNA polymerase | HC |
chr5:3060764-3075383 | 20130731
Length = 1519
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 121/380 (31%), Positives = 186/380 (48%), Gaps = 30/380 (7%)
Query: 37 ANDLQSVVDQYLQIRGCAKPAR---DIETHFGVNKELSDASNKAWLDKMKSLFISKGSGF 93
AN+L S V L+ P R +I T K +A N + L MK + + K +
Sbjct: 272 ANELSSRVLDCLRFSK-INPDRTPVNIFTELQQRKVGENACNSSGLRWMKDVVLGKRNDC 330
Query: 94 SSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHN-----MCFLQKLVDENLCLAYKE 148
+ R+V+ GD ++E+GIP +IA+ + E VN N C +L+++ +
Sbjct: 331 TFRTVVVGDPDLELSEIGIPCQIAEALQVSEYVNRQNRQNLLYCCELRLLEKGQINVRRN 390
Query: 149 G--VSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHD-DH 205
G V Y + L+ G I +R ++DGD V INRPP+ H+HS+ AL V +
Sbjct: 391 GNPVVLYKKED-------LQIGDIFYRPLVDGDKVLINRPPSIHQHSMIALTVRVLPISS 443
Query: 206 TVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQLSTD 265
V INP+ C PL DFDGDC+H + PQS+ A+ E+ EL ++++QL++ SG L LS D
Sbjct: 444 VVSINPICCSPLRGDFDGDCLHGYIPQSVGARVELNELVALDRQLINGQSGGNLLSLSQD 503
Query: 266 SLLSLKMLVKKGF-MDRAAANQLAMFLSLPLPRPALLKAGSGDS-YWTSIQILQCALPLS 323
SL + +L++ G + QL M + L PA+ KA S ++ +W+ Q+ LP
Sbjct: 504 SLTAAHLLLEDGVGFNIYQVQQLEMLCNKELTSPAIFKAPSSNTPFWSGKQLFSMLLPSK 563
Query: 324 FDCT--GGRYLIRQSDILEFDLSRDVLPAVINEIAASV---FFGKGPQEALNFFDVLQPV 378
FD ++ +++ S L N + S+ F GK L+ Q
Sbjct: 564 FDYAFPSNDVFVKDGELISCSESSGWLRDSENNVFQSLVEHFQGK----ILDVLHGAQKA 619
Query: 379 LMESIFSNGFSVGLHDFSIS 398
L E + GFSV L D +S
Sbjct: 620 LCEWLSMTGFSVSLSDLYLS 639
>Medtr5g023020.1 | DNA-directed RNA polymerase | HC |
chr5:9130153-9139413 | 20130731
Length = 1834
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 92/375 (24%), Positives = 165/375 (44%), Gaps = 34/375 (9%)
Query: 76 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQ 135
KA +++ + K FS+R+VIT D I+++G+P IA +T+ E V +N+ L+
Sbjct: 340 KAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLK 399
Query: 136 KLVDENLCLAYKEGVSTYSLREGSK----------GHTYLKPGQIVHRRIMDGDIVFINR 185
+LV+ + + Y +R+ + +L+ G V R + DGD V NR
Sbjct: 400 ELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNR 459
Query: 186 PPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFS 245
P+ HK S+ + I T ++N + P ADFDGD +++ PQS +AEV+EL
Sbjct: 460 QPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMM 519
Query: 246 VEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAAANQLAMF---LSLPLPRPALL 301
V K ++S + + + DSLL + + K+ F+ + + M+ +P P +L
Sbjct: 520 VPKCIVSPQANRPVMGIVQDSLLGCRKITKRDTFISKDVFMNILMWWEDFDGKVPAPTIL 579
Query: 302 KAGSGDSYWTSIQILQCALPLSFD---------------CTGGRYLIR--QSDILEFDLS 344
K + WT Q+ +P + T G ++R + ++L L
Sbjct: 580 KP---EPLWTGKQVFNLIIPKQINLIRYSSWHNENERGPITPGDTMVRIEKGELLTGTLC 636
Query: 345 RDVLPAVINEIAASVFFGKGPQEALNFFDVLQPVLMESIFSNGFSVGLHDFSISGAVKRV 404
+ L + ++ GP A F Q ++ + FS+G+ D +
Sbjct: 637 KKTLGTGTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMET 696
Query: 405 TDRNIGKVSPLLYQL 419
++ I + + QL
Sbjct: 697 INQTISQAKDKVKQL 711
>Medtr4g061700.1 | DNA-directed RNA polymerase I protein | HC |
chr4:22846383-22818964 | 20130731
Length = 1379
Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 14/224 (6%)
Query: 93 FSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDEN------LCLAY 146
++ R+VI+ D +I EV IP+ +A+ +T+ ERV HN+ L++ V +
Sbjct: 359 YTGRTVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCVRNGPDKYPGARMLK 418
Query: 147 KEGVSTYSLREGSKGHTY--LKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDD 204
+ G ++++LR S+ LK G IV R I DGDIV NR P+ H+ S+ + +
Sbjct: 419 EAGGNSWNLRVSSRTRRADELKFGDIVERHIEDGDIVIFNRQPSLHRMSMMSHRARVMPW 478
Query: 205 HTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQLST 264
T++ N +C P ADFDGD ++L PQ+ A+ E + L +V+ L + +G + + +
Sbjct: 479 RTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALLLMTVQNNLCTPKNGEILVASTQ 538
Query: 265 DSLLSLKMLVKKG-FMDRAAANQLAMFLS-----LPLPRPALLK 302
D L S ++ +K F DR++ + + ++ + LP PA++K
Sbjct: 539 DFLTSSFLITRKDTFYDRSSFSLICSYMGDGMDPIDLPTPAIIK 582
>Medtr4g061800.1 | DNA-directed RNA polymerase I protein | HC |
chr4:22876102-22852950 | 20130731
Length = 1388
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 125/242 (51%), Gaps = 17/242 (7%)
Query: 93 FSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDEN------LCLAY 146
++ R+VI+ D +I EV IP+ +A+ +T+ ERV HN+ L++ V +
Sbjct: 360 YTGRTVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCVRNGPDKYPGARMVK 419
Query: 147 KEGVSTYSLR--EGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDD 204
+ G ++++L+ ++ LK G IV R I DGD+V NR P+ H+ S+ +
Sbjct: 420 EAGGNSWNLKILTRTRRADELKFGDIVERHIEDGDVVLFNRQPSLHRMSMMCHRARVMPW 479
Query: 205 HTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQLST 264
T++ N +C P ADFDGD +++ PQ+ A+ E + L +V+ L + +G + + +
Sbjct: 480 RTLRFNESVCNPYNADFDGDEMNIHVPQTEEARTEALLLMTVQNNLCTPKNGEILVASTQ 539
Query: 265 DSLLSLKMLVKKG-FMDRAAANQLAMFLS-----LPLPRPALLKAGSGDSYWTSIQILQC 318
D L S ++ +K F DR+ + + ++ + LP PA++K W+ Q+
Sbjct: 540 DFLTSSFLITRKDTFYDRSTFSLICSYMGDGMDPVDLPTPAIIKPV---ELWSGKQLFNI 596
Query: 319 AL 320
L
Sbjct: 597 LL 598
>Medtr4g086290.2 | DNA-directed RNA polymerase I protein | HC |
chr4:33799127-33783168 | 20130731
Length = 1179
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 120/244 (49%), Gaps = 38/244 (15%)
Query: 79 LDKMKSLFISKGSG----FSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFL 134
LDK + +F K G ++ RSVI+ D Y +NE+GIP A R+T+ ERV N
Sbjct: 398 LDKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNSA-- 455
Query: 135 QKLVDENL--------CLAYKEGVSTYSLR-------------EGSKG--------HTYL 165
KL+D L + Y + ST L+ + S+G H +
Sbjct: 456 -KLMDAILNGPDTHPGAILYTDKTSTLRLQKDKSLRSSTSRRLQSSRGVIMHHGKIHEHE 514
Query: 166 KPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYI-HDDHTVKINPLICGPLGADFDGD 224
G++V+R + DGD+V +NR PT HK S+ A VV + + TV+++ C ADFDGD
Sbjct: 515 FEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCSTYNADFDGD 574
Query: 225 CVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAA 283
+++ +PQ ++AE + + Q + SG+ L D ++S +L KK F+
Sbjct: 575 EINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSCQE 634
Query: 284 ANQL 287
NQL
Sbjct: 635 FNQL 638
>Medtr4g086290.1 | DNA-directed RNA polymerase I protein | HC |
chr4:33799127-33783168 | 20130731
Length = 1628
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 120/244 (49%), Gaps = 38/244 (15%)
Query: 79 LDKMKSLFISKGSG----FSSRSVITGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFL 134
LDK + +F K G ++ RSVI+ D Y +NE+GIP A R+T+ ERV N
Sbjct: 398 LDKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNSA-- 455
Query: 135 QKLVDENL--------CLAYKEGVSTYSLR-------------EGSKG--------HTYL 165
KL+D L + Y + ST L+ + S+G H +
Sbjct: 456 -KLMDAILNGPDTHPGAILYTDKTSTLRLQKDKSLRSSTSRRLQSSRGVIMHHGKIHEHE 514
Query: 166 KPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYI-HDDHTVKINPLICGPLGADFDGD 224
G++V+R + DGD+V +NR PT HK S+ A VV + + TV+++ C ADFDGD
Sbjct: 515 FEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCSTYNADFDGD 574
Query: 225 CVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLVKKG-FMDRAA 283
+++ +PQ ++AE + + Q + SG+ L D ++S +L KK F+
Sbjct: 575 EINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSCQE 634
Query: 284 ANQL 287
NQL
Sbjct: 635 FNQL 638
>Medtr0002s0510.1 | DNA-directed RNA polymerase subunit beta | LC |
scaffold0002:218431-229740 | 20130731
Length = 3148
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 108/237 (45%), Gaps = 23/237 (9%)
Query: 40 LQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVI 99
+Q VD L +P RD H V K LSD + + + + K +S RSVI
Sbjct: 1429 VQEAVDTLLDSGSRGQPTRD--GHNKVYKSLSDVI-EGKEGRFRETLLGKRVDYSGRSVI 1485
Query: 100 TGDGYKRINEVGIPLEIAQRITFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGS 159
+++ G+PLEIA + L + ++ L+ + +T ++R
Sbjct: 1486 VVGPSLSLHQCGLPLEIA--------IKLFQLFVIRDLITKR---------ATSNVRIAK 1528
Query: 160 KGHTYLKP--GQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPL 217
+ +P +I+ + +M G V +NR PT H+ +QA + + T+ ++PL+C
Sbjct: 1529 RKIWEKEPIVWEIL-QEVMRGHPVLLNRAPTLHRLGIQAFQPTLVEGRTISLHPLVCKGF 1587
Query: 218 GADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLV 274
ADFDGD + + P SL A+AE L LLS G+ + D L+ L +L
Sbjct: 1588 NADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSPAIGDPICVPTQDMLIGLYVLT 1644
>Medtr4g051130.1 | DNA-directed RNA polymerase subunit beta | HC |
chr4:18155924-18149828 | 20130731
Length = 1748
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 126/279 (45%), Gaps = 28/279 (10%)
Query: 1 MSSDPSMTFLRKLLRK---VEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQ--IRGCAK 55
MSSD + + R + R ++++ +SRS P E + +Q VD L IRG +
Sbjct: 1368 MSSDINELYRRVIYRNNTLIDLLTTSRS-TPG-ELVMCQEKLVQEAVDTLLDNGIRG--Q 1423
Query: 56 PARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLE 115
P RD H V K SD + + + + K +S RSVI ++ G+P E
Sbjct: 1424 PMRD--GHNKVYKSFSDII-EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPRE 1480
Query: 116 IAQRITFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRI 175
IA + L ++ L+ ++ A GV+ +RE K + + + +
Sbjct: 1481 IA--------IELFQTFLIRGLIRKHF--ASNIGVAKSKIRE--KEPIVWE----ILQEV 1524
Query: 176 MDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLA 235
M G V +NR PT H+ +QA + + + ++PL+C ADFDGD + + P SL
Sbjct: 1525 MRGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE 1584
Query: 236 AKAEVVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLV 274
A+AE L LLS G+ + D L+ L +L
Sbjct: 1585 AQAEARLLMFSHTNLLSPAIGDPISVPTQDMLIGLYVLT 1623
>Medtr3g062790.1 | DNA-directed RNA polymerase subunit beta | HC |
chr3:28379539-28382385 | 20130731
Length = 710
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 124/282 (43%), Gaps = 34/282 (12%)
Query: 1 MSSDPSMTFLRKLLRK---VEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQ--IRGCAK 55
MSSD + + R + R ++++ +SRS P E + +Q VD L IRG +
Sbjct: 316 MSSDINELYRRVIYRNNTLIDLLTTSRS-TPG-ELVMCQEKLVQEAVDTLLDNGIRG--Q 371
Query: 56 PARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLE 115
P RD H V K SD + + + K +S RSVI ++ G+P E
Sbjct: 372 PMRD--GHNKVYKSFSDIIEGK-EGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPRE 428
Query: 116 IAQRITFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVH--- 172
IA + L ++ L+ ++ A GV+ +RE IV
Sbjct: 429 IA--------IELFQTFLIRGLIRKHF--ASNIGVAKSKIREKEP---------IVWEIL 469
Query: 173 RRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQ 232
+ +M G V +NR PT H+ +QA + + + ++PL+C ADFDGD + + P
Sbjct: 470 QEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 529
Query: 233 SLAAKAEVVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLV 274
SL A+AE L LLS G+ + D L+ L +L
Sbjct: 530 SLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDMLIGLYVLT 571
>Medtr3g062770.1 | DNA-directed RNA polymerase subunit beta | HC |
chr3:28371717-28374673 | 20130731
Length = 710
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 124/282 (43%), Gaps = 34/282 (12%)
Query: 1 MSSDPSMTFLRKLLRK---VEIIRSSRSGEPNFESHEVEANDLQSVVDQYLQ--IRGCAK 55
MSSD + + R + R ++++ +SRS P E + +Q VD L IRG +
Sbjct: 316 MSSDINELYRRVIYRNNTLIDLLTTSRS-TPG-ELVMCQEKLVQEAVDTLLDNGIRG--Q 371
Query: 56 PARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPLE 115
P RD H V K SD + + + K +S RSVI ++ G+P E
Sbjct: 372 PMRD--GHNKVYKSFSDIIEGK-EGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPRE 428
Query: 116 IAQRITFEERVNLHNMCFLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVH--- 172
IA + L ++ L+ ++ A GV+ +RE IV
Sbjct: 429 IA--------IELFQTFLIRGLIRKHF--ASNIGVAKSKIREKEP---------IVWEIL 469
Query: 173 RRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQ 232
+ +M G V +NR PT H+ +QA + + + ++PL+C ADFDGD + + P
Sbjct: 470 QEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 529
Query: 233 SLAAKAEVVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLV 274
SL A+AE L LLS G+ + D L+ L +L
Sbjct: 530 SLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDMLIGLYVLT 571
>Medtr8g016510.1 | DNA-directed RNA polymerase subunit beta | HC |
chr8:5581059-5582468 | 20130731
Length = 404
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 51/100 (51%)
Query: 175 IMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSL 234
+M G V +NR PT H+ +QA + + + ++PL+C ADFDGD + + P SL
Sbjct: 189 VMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSL 248
Query: 235 AAKAEVVELFSVEKQLLSSHSGNLNLQLSTDSLLSLKMLV 274
A+ E L + LLS G+ + D L+ L +L
Sbjct: 249 EAQVEARLLMFSDTNLLSPAIGDPISVPTQDMLIRLYVLT 288