Miyakogusa Predicted Gene
- Lj0g3v0236079.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0236079.1 Non Characterized Hit- tr|G7IP95|G7IP95_MEDTR
RNA-binding protein, putative OS=Medicago truncatula
G,79.63,0,RNA-binding domain, RBD,NULL; SUBFAMILY NOT NAMED,NULL;
FAMILY NOT NAMED,NULL; RRM,RNA recognition
m,NODE_13005_length_1565_cov_297.072845.path1.1
(476 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 698 0.0
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 698 0.0
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 698 0.0
Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 548 e-156
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 464 e-131
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 464 e-130
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 449 e-126
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 448 e-126
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 253 2e-67
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 253 2e-67
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 194 2e-49
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 170 2e-42
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 160 3e-39
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 139 6e-33
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 139 6e-33
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 139 6e-33
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 139 6e-33
Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 87 2e-17
Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 86 5e-17
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 86 6e-17
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 86 1e-16
Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 85 1e-16
Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 85 1e-16
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 84 2e-16
Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 83 6e-16
Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 83 6e-16
Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 82 1e-15
Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 82 1e-15
Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 82 2e-15
Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 82 2e-15
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 81 2e-15
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 80 3e-15
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 80 3e-15
Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 77 3e-14
Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 77 3e-14
Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 76 7e-14
Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 76 7e-14
Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 76 7e-14
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 73 6e-13
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 73 6e-13
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 1e-12
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 71 2e-12
Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 71 2e-12
Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein... 71 2e-12
Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 71 2e-12
Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 71 2e-12
Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 4e-12
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 70 5e-12
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 70 5e-12
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 68 2e-11
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 68 2e-11
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 68 2e-11
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 68 2e-11
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 68 2e-11
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 68 2e-11
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 68 2e-11
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 68 2e-11
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 4e-11
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 4e-11
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 6e-11
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 66 7e-11
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 8e-11
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 66 9e-11
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 66 9e-11
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 1e-10
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 1e-10
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 65 2e-10
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 2e-10
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 2e-10
Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 3e-10
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 4e-10
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 5e-10
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 63 5e-10
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 63 5e-10
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 62 1e-09
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 62 1e-09
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 62 1e-09
Medtr4g036415.1 | splicing factor-like protein | HC | chr4:13104... 62 2e-09
Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 3e-09
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 4e-09
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 4e-09
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 4e-09
Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 5e-09
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 5e-09
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 5e-09
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 5e-09
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 60 5e-09
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 60 6e-09
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 2e-08
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 58 2e-08
Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 2e-08
Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 2e-08
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 3e-08
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 3e-08
Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 4e-08
Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 4e-08
Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 4e-08
Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 4e-08
Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |... 57 6e-08
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 6e-08
Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |... 56 6e-08
Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |... 56 6e-08
Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 9e-08
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 56 1e-07
Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-07
Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-07
Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC | ch... 55 1e-07
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 55 1e-07
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 55 2e-07
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 55 2e-07
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 54 2e-07
Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |... 54 3e-07
Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |... 54 3e-07
Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |... 54 3e-07
Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |... 54 3e-07
Medtr7g094670.1 | mRNA capping enzyme, putative | LC | chr7:3777... 54 3e-07
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 7e-07
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 52 9e-07
Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-06
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 2e-06
Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 3e-06
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 49 9e-06
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/479 (74%), Positives = 393/479 (82%), Gaps = 7/479 (1%)
Query: 3 MDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 62
MDPGKLFIGGISWDTNE+RLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER
Sbjct: 1 MDPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 60
Query: 63 VVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 122
VVMEKHVIDGRTVEAKKAVPRDDQN RTKKIFVGGL ST+TES
Sbjct: 61 VVMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTES 120
Query: 123 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKR 182
DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFIT+DSEE VEKVL+KTFHELNGKMVEVKR
Sbjct: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKR 180
Query: 183 AVPKELSPSPSRGQLGGYSY-AMSRVGSFANGFTQGYNPGMVGGHGLRIDGRLSPVTVGR 241
AVPK+LSPSPSRGQLGG+SY MSRVGSF+NGF QGYNP ++GGHGLR+DGRLSP VGR
Sbjct: 181 AVPKDLSPSPSRGQLGGFSYGTMSRVGSFSNGFAQGYNPSLIGGHGLRLDGRLSPANVGR 240
Query: 242 SGYPLLSPNYGSELNFELPLSQNESANFTSNFVIGRALNSSYNGSPSRYNNAMGY-AGSS 300
SGY L SP+YG+ LNFE PL+QNE+ NFTSNF++GRAL+S Y+ SPSRYNNAM Y AGS+
Sbjct: 241 SGYSLFSPSYGTGLNFEPPLNQNENENFTSNFIMGRALSSPYSASPSRYNNAMAYAAGSN 300
Query: 301 IGNNATISSSSINQNLWGNGNLYGATNPATSNAFVGYGSENXXXXXXXXXXXX-XXXXXX 359
+GN++ ISS+ NQ+LWGNGNL A NPA+S+AF+GYGSEN
Sbjct: 301 VGNSSAISST--NQSLWGNGNLNYANNPASSDAFLGYGSENSSIGSFGNIGSLWSTSVGA 358
Query: 360 NNQAGTIGSGYGKGSLSYRSGDVILGSKTVDYGRSSESTVASAPLYTLSNGNYDEAFKDT 419
NQAGTIGSGYGK SL+YR GDVILGSK V YG++SES V S Y SNG+Y EA+K T
Sbjct: 359 ANQAGTIGSGYGKSSLNYRLGDVILGSKAVGYGKNSESNVESDSSYAFSNGSYGEAYKST 418
Query: 420 YEAGPFYRDQTWRSSASELDDSGSLGLGFENAVSDLMSK-GSGGHIGAY-AVASRQSNR 476
+EAGPFY+D TWR + SEL+DSG L G ENAVSDLM K S GHIGAY AVA+RQSNR
Sbjct: 419 FEAGPFYQDHTWRPTTSELEDSGPLSFGLENAVSDLMRKSSSSGHIGAYAAVANRQSNR 477
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/479 (74%), Positives = 393/479 (82%), Gaps = 7/479 (1%)
Query: 3 MDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 62
MDPGKLFIGGISWDTNE+RLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER
Sbjct: 1 MDPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 60
Query: 63 VVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 122
VVMEKHVIDGRTVEAKKAVPRDDQN RTKKIFVGGL ST+TES
Sbjct: 61 VVMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTES 120
Query: 123 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKR 182
DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFIT+DSEE VEKVL+KTFHELNGKMVEVKR
Sbjct: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKR 180
Query: 183 AVPKELSPSPSRGQLGGYSY-AMSRVGSFANGFTQGYNPGMVGGHGLRIDGRLSPVTVGR 241
AVPK+LSPSPSRGQLGG+SY MSRVGSF+NGF QGYNP ++GGHGLR+DGRLSP VGR
Sbjct: 181 AVPKDLSPSPSRGQLGGFSYGTMSRVGSFSNGFAQGYNPSLIGGHGLRLDGRLSPANVGR 240
Query: 242 SGYPLLSPNYGSELNFELPLSQNESANFTSNFVIGRALNSSYNGSPSRYNNAMGY-AGSS 300
SGY L SP+YG+ LNFE PL+QNE+ NFTSNF++GRAL+S Y+ SPSRYNNAM Y AGS+
Sbjct: 241 SGYSLFSPSYGTGLNFEPPLNQNENENFTSNFIMGRALSSPYSASPSRYNNAMAYAAGSN 300
Query: 301 IGNNATISSSSINQNLWGNGNLYGATNPATSNAFVGYGSENXXXXXXXXXXXX-XXXXXX 359
+GN++ ISS+ NQ+LWGNGNL A NPA+S+AF+GYGSEN
Sbjct: 301 VGNSSAISST--NQSLWGNGNLNYANNPASSDAFLGYGSENSSIGSFGNIGSLWSTSVGA 358
Query: 360 NNQAGTIGSGYGKGSLSYRSGDVILGSKTVDYGRSSESTVASAPLYTLSNGNYDEAFKDT 419
NQAGTIGSGYGK SL+YR GDVILGSK V YG++SES V S Y SNG+Y EA+K T
Sbjct: 359 ANQAGTIGSGYGKSSLNYRLGDVILGSKAVGYGKNSESNVESDSSYAFSNGSYGEAYKST 418
Query: 420 YEAGPFYRDQTWRSSASELDDSGSLGLGFENAVSDLMSK-GSGGHIGAY-AVASRQSNR 476
+EAGPFY+D TWR + SEL+DSG L G ENAVSDLM K S GHIGAY AVA+RQSNR
Sbjct: 419 FEAGPFYQDHTWRPTTSELEDSGPLSFGLENAVSDLMRKSSSSGHIGAYAAVANRQSNR 477
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/479 (74%), Positives = 393/479 (82%), Gaps = 7/479 (1%)
Query: 3 MDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 62
MDPGKLFIGGISWDTNE+RLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER
Sbjct: 1 MDPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 60
Query: 63 VVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 122
VVMEKHVIDGRTVEAKKAVPRDDQN RTKKIFVGGL ST+TES
Sbjct: 61 VVMEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTES 120
Query: 123 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKR 182
DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFIT+DSEE VEKVL+KTFHELNGKMVEVKR
Sbjct: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKR 180
Query: 183 AVPKELSPSPSRGQLGGYSY-AMSRVGSFANGFTQGYNPGMVGGHGLRIDGRLSPVTVGR 241
AVPK+LSPSPSRGQLGG+SY MSRVGSF+NGF QGYNP ++GGHGLR+DGRLSP VGR
Sbjct: 181 AVPKDLSPSPSRGQLGGFSYGTMSRVGSFSNGFAQGYNPSLIGGHGLRLDGRLSPANVGR 240
Query: 242 SGYPLLSPNYGSELNFELPLSQNESANFTSNFVIGRALNSSYNGSPSRYNNAMGY-AGSS 300
SGY L SP+YG+ LNFE PL+QNE+ NFTSNF++GRAL+S Y+ SPSRYNNAM Y AGS+
Sbjct: 241 SGYSLFSPSYGTGLNFEPPLNQNENENFTSNFIMGRALSSPYSASPSRYNNAMAYAAGSN 300
Query: 301 IGNNATISSSSINQNLWGNGNLYGATNPATSNAFVGYGSENXXXXXXXXXXXX-XXXXXX 359
+GN++ ISS+ NQ+LWGNGNL A NPA+S+AF+GYGSEN
Sbjct: 301 VGNSSAISST--NQSLWGNGNLNYANNPASSDAFLGYGSENSSIGSFGNIGSLWSTSVGA 358
Query: 360 NNQAGTIGSGYGKGSLSYRSGDVILGSKTVDYGRSSESTVASAPLYTLSNGNYDEAFKDT 419
NQAGTIGSGYGK SL+YR GDVILGSK V YG++SES V S Y SNG+Y EA+K T
Sbjct: 359 ANQAGTIGSGYGKSSLNYRLGDVILGSKAVGYGKNSESNVESDSSYAFSNGSYGEAYKST 418
Query: 420 YEAGPFYRDQTWRSSASELDDSGSLGLGFENAVSDLMSK-GSGGHIGAY-AVASRQSNR 476
+EAGPFY+D TWR + SEL+DSG L G ENAVSDLM K S GHIGAY AVA+RQSNR
Sbjct: 419 FEAGPFYQDHTWRPTTSELEDSGPLSFGLENAVSDLMRKSSSSGHIGAYAAVANRQSNR 477
>Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9464335-9461370 | 20130731
Length = 411
Score = 548 bits (1411), Expect = e-156, Method: Compositional matrix adjust.
Identities = 285/407 (70%), Positives = 321/407 (78%), Gaps = 7/407 (1%)
Query: 75 VEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKNYFDQFGTI 134
VEAKKAVPRDDQN RTKKIFVGGL ST+TESDFKNYFDQFGTI
Sbjct: 3 VEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFKNYFDQFGTI 62
Query: 135 TDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRAVPKELSPSPSR 194
TDVVVMYDHNTQRPRGFGFIT+DSEE VEKVL+KTFHELNGKMVEVKRAVPK+LSPSPSR
Sbjct: 63 TDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRAVPKDLSPSPSR 122
Query: 195 GQLGGYSY-AMSRVGSFANGFTQGYNPGMVGGHGLRIDGRLSPVTVGRSGYPLLSPNYGS 253
GQLGG+SY MSRVGSF+NGF QGYNP ++GGHGLR+DGRLSP VGRSGY L SP+YG+
Sbjct: 123 GQLGGFSYGTMSRVGSFSNGFAQGYNPSLIGGHGLRLDGRLSPANVGRSGYSLFSPSYGT 182
Query: 254 ELNFELPLSQNESANFTSNFVIGRALNSSYNGSPSRYNNAMGY-AGSSIGNNATISSSSI 312
LNFE PL+QNE+ NFTSNF++GRAL+S Y+ SPSRYNNAM Y AGS++GN++ ISS+
Sbjct: 183 GLNFEPPLNQNENENFTSNFIMGRALSSPYSASPSRYNNAMAYAAGSNVGNSSAISST-- 240
Query: 313 NQNLWGNGNLYGATNPATSNAFVGYGSENXXXXXXXXXXXX-XXXXXXNNQAGTIGSGYG 371
NQ+LWGNGNL A NPA+S+AF+GYGSEN NQAGTIGSGYG
Sbjct: 241 NQSLWGNGNLNYANNPASSDAFLGYGSENSSIGSFGNIGSLWSTSVGAANQAGTIGSGYG 300
Query: 372 KGSLSYRSGDVILGSKTVDYGRSSESTVASAPLYTLSNGNYDEAFKDTYEAGPFYRDQTW 431
K SL+YR GDVILGSK V YG++SES V S Y SNG+Y EA+K T+EAGPFY+D TW
Sbjct: 301 KSSLNYRLGDVILGSKAVGYGKNSESNVESDSSYAFSNGSYGEAYKSTFEAGPFYQDHTW 360
Query: 432 RSSASELDDSGSLGLGFENAVSDLMSK-GSGGHIGAY-AVASRQSNR 476
R + SEL+DSG L G ENAVSDLM K S GHIGAY AVA+RQSNR
Sbjct: 361 RPTTSELEDSGPLSFGLENAVSDLMRKSSSSGHIGAYAAVANRQSNR 407
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+GG++ E + YF FG + + V+M D T R RGFGF+ + E+V+ +
Sbjct: 37 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHK 96
Query: 67 K-HVIDGRTVEAKKAVPRD 84
H ++G+ VE K+AVP+D
Sbjct: 97 TFHELNGKMVEVKRAVPKD 115
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 464 bits (1194), Expect = e-131, Method: Compositional matrix adjust.
Identities = 269/479 (56%), Positives = 313/479 (65%), Gaps = 7/479 (1%)
Query: 1 MEMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVA 60
M+ D GKLFIGGISWDTNEERLR+YF +G+V EAVIMKDRTTGRARGFGFVVF DP+VA
Sbjct: 1 MQSDSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVA 60
Query: 61 ERVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTIT 120
+ VV EKH IDGR VEAKKAVPRDDQN RT+KIFVGGL ST+T
Sbjct: 61 DIVVQEKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPG--RTRKIFVGGLASTVT 118
Query: 121 ESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEV 180
ESDFK YFDQFGTITDVVVMYDHNTQRPRGFGFIT+DSEE V++VL KTFHELNGKMVEV
Sbjct: 119 ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEV 178
Query: 181 KRAVPKELSPSPSRGQLGGYSYAMSRVGSFANGFTQGYNPGMVGGHGLRIDGRLSPVTVG 240
KRAVPKELSP P+R L GY+Y +SRV SF NGF Q Y+P VGG+GLR+DGR SPV G
Sbjct: 179 KRAVPKELSPGPARSPLSGYNYGLSRVNSFLNGFNQSYSPSTVGGYGLRVDGRFSPVAGG 238
Query: 241 RSGYPLLSPNYGSELNFELPLSQ--NESANFTSNFVIGRALNSSYNGSPSRYNNAMGYAG 298
R+ Y YG +NFE LS +A+F N GR LN + G +R+ + +GY
Sbjct: 239 RNAYAPFGSGYGMGMNFEPGLSPGFGGNASFNGNLSYGRGLNPYFIGGSNRFGSPVGYES 298
Query: 299 SSIGNNATISSSSINQNLWGNGNLYGATNPATSNAFVGYGSENXXXXXXXXXXXXXXXXX 358
+ G+N+ SS+ +NLWGNG+L T+ A SNA++G GS N
Sbjct: 299 GNGGSNSFF--SSVTRNLWGNGSLNYGTSSANSNAYIGSGSGNVGGNAFGNTGVNWSSSP 356
Query: 359 XNNQAGTIGSGYGKGSLSYRSGDVILGSKTVDYGRSSESTVASAPLYTLSN-GNYDEAFK 417
+ G G G+L Y G+ G T YGRSS ST+A Y+ SN G D AF
Sbjct: 357 ISGHGGGNNVSQGSGNLGYGGGNNGYGLGTEGYGRSSGSTLAPTSSYSTSNGGGVDGAFA 416
Query: 418 DTYEAGPFYRDQTWRSSASELDDSGSLGLGFENAVSDLMSKGSGGHIGAYAVASRQSNR 476
D Y Y D TWRSS SE D SG G G A SD+ +K S G++G Y V RQ NR
Sbjct: 417 DFYNNNSVYGDTTWRSSNSERDGSGPFGYGLGGAPSDVSAKTSPGYVGGYTVNKRQPNR 475
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 464 bits (1193), Expect = e-130, Method: Compositional matrix adjust.
Identities = 269/479 (56%), Positives = 313/479 (65%), Gaps = 7/479 (1%)
Query: 1 MEMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVA 60
M+ D GKLFIGGISWDTNEERLR+YF +G+V EAVIMKDRTTGRARGFGFVVF DP+VA
Sbjct: 1 MQSDSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVA 60
Query: 61 ERVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTIT 120
+ VV EKH IDGR VEAKKAVPRDDQN RT+KIFVGGL ST+T
Sbjct: 61 DIVVQEKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPG--RTRKIFVGGLASTVT 118
Query: 121 ESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEV 180
ESDFK YFDQFGTITDVVVMYDHNTQRPRGFGFIT+DSEE V++VL KTFHELNGKMVEV
Sbjct: 119 ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEV 178
Query: 181 KRAVPKELSPSPSRGQLGGYSYAMSRVGSFANGFTQGYNPGMVGGHGLRIDGRLSPVTVG 240
KRAVPKELSP P+R L GY+Y +SRV SF NGF Q Y+P VGG+GLR+DGR SPV G
Sbjct: 179 KRAVPKELSPGPARSPLSGYNYGLSRVNSFLNGFNQSYSPSTVGGYGLRVDGRFSPVAGG 238
Query: 241 RSGYPLLSPNYGSELNFELPLSQ--NESANFTSNFVIGRALNSSYNGSPSRYNNAMGYAG 298
R+ Y YG +NFE LS +A+F N GR LN + G +R+ + +GY
Sbjct: 239 RNAYAPFGSGYGMGMNFEPGLSPGFGGNASFNGNLSYGRGLNPYFIGGSNRFGSPVGYES 298
Query: 299 SSIGNNATISSSSINQNLWGNGNLYGATNPATSNAFVGYGSENXXXXXXXXXXXXXXXXX 358
+ G+N+ SS+ +NLWGNG+L T+ A SNA++G GS N
Sbjct: 299 GNGGSNSFF--SSVTRNLWGNGSLNYGTSSANSNAYIGSGSGNVGGNAFGNTGVNWSSSP 356
Query: 359 XNNQAGTIGSGYGKGSLSYRSGDVILGSKTVDYGRSSESTVASAPLYTLSN-GNYDEAFK 417
+ G G G+L Y G+ G T YGRSS ST+A Y+ SN G D AF
Sbjct: 357 ISGHGGGNNVSQGSGNLGYGGGNNGYGLGTEGYGRSSGSTLAPTSSYSTSNGGGVDGAFA 416
Query: 418 DTYEAGPFYRDQTWRSSASELDDSGSLGLGFENAVSDLMSKGSGGHIGAYAVASRQSNR 476
D Y Y D TWRSS SE D SG G G A SD+ +K S G++G Y V RQ NR
Sbjct: 417 DFYNNNSVYGDTTWRSSNSERDGSGPFGYGLGGAPSDVSAKTSPGYVGGYTVNKRQPNR 475
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 449 bits (1154), Expect = e-126, Method: Compositional matrix adjust.
Identities = 259/483 (53%), Positives = 319/483 (66%), Gaps = 13/483 (2%)
Query: 1 MEMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVA 60
ME D GKLFIGGISWDT+EERL++YF +G+V+EAVIM+DR TGRARGFGFVVF+DP+VA
Sbjct: 1 MESDLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVA 60
Query: 61 ERVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTIT 120
ERV+++KH+IDGRTVEAKKAVPRDDQ RTKKIFVGGLPSTIT
Sbjct: 61 ERVIIDKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPG--RTKKIFVGGLPSTIT 118
Query: 121 ESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEV 180
ESDFK YFDQFGTITDVVVMYDHNTQRPRGFGFIT+DSEE V++VLYKTFHELNGKMVEV
Sbjct: 119 ESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEV 178
Query: 181 KRAVPKELSPSPSRGQLGGY-SYAM-SRVGSFANGFTQGYNPGMVGGHGLRIDGRLSPVT 238
KRAVPKELSP P+R L GY +Y++ SR S+ N + QGY+ +GG G+R+DGR SP+T
Sbjct: 179 KRAVPKELSPGPTRSPLIGYNNYSLNSRASSYLNNYGQGYSMSPIGGFGVRMDGRFSPLT 238
Query: 239 VGRSGY-PLLSPNYGSELNFELPLSQN--ESANFTSNFVIGRALNSSYNGSPSRYNNAMG 295
GR+G+ P + YG +N E LS N ++NF +N GR + Y+G+ SRY +G
Sbjct: 239 GGRTGFTPFGNTGYGMGMNLESGLSPNFGGNSNFGNNLGYGRIFSPFYSGNSSRYATPIG 298
Query: 296 YAGSSIGNNATISSSSINQNLWGNGNLYGATNPATSNAFVGYGSENXXXXXXXXXXXXXX 355
Y G + ++ ++S+S +N+WGNG L A NP + AF+G G
Sbjct: 299 YNGGNGRGDSLMNSTS--RNVWGNGGLSNANNPVSPGAFLGSGG--GAFGVSIGNSGTNW 354
Query: 356 XXXXNNQAGTIGSGYGKGSLSYRSGDVILGSKTVDYGRSSESTVASAPLYTLSNGNYDEA 415
Q G SGY G+ Y GD G V YGR+S + + + S G YD +
Sbjct: 355 GAAIQGQGGGAASGYATGNNVYEGGDSSFGLGGVGYGRNSNAVANPSSTFNASAGGYDGS 414
Query: 416 FKDTYE--AGPFYRDQTWRSSASELDDSGSLGLGFENAVSDLMSKGSGGHIGAYAVASRQ 473
+ D Y +G Y D WRS+ SE+D SGS G SD K S G+IG+Y VASRQ
Sbjct: 415 YGDLYRSGSGSVYNDSAWRSATSEIDGSGSFSYGLGGIASDDPVKTSEGYIGSYNVASRQ 474
Query: 474 SNR 476
NR
Sbjct: 475 PNR 477
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 448 bits (1152), Expect = e-126, Method: Compositional matrix adjust.
Identities = 259/483 (53%), Positives = 319/483 (66%), Gaps = 13/483 (2%)
Query: 1 MEMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVA 60
ME D GKLFIGGISWDT+EERL++YF +G+V+EAVIM+DR TGRARGFGFVVF+DP+VA
Sbjct: 1 MESDLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVA 60
Query: 61 ERVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTIT 120
ERV+++KH+IDGRTVEAKKAVPRDDQ RTKKIFVGGLPSTIT
Sbjct: 61 ERVIIDKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPG--RTKKIFVGGLPSTIT 118
Query: 121 ESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEV 180
ESDFK YFDQFGTITDVVVMYDHNTQRPRGFGFIT+DSEE V++VLYKTFHELNGKMVEV
Sbjct: 119 ESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEV 178
Query: 181 KRAVPKELSPSPSRGQLGGY-SYAM-SRVGSFANGFTQGYNPGMVGGHGLRIDGRLSPVT 238
KRAVPKELSP P+R L GY +Y++ SR S+ N + QGY+ +GG G+R+DGR SP+T
Sbjct: 179 KRAVPKELSPGPTRSPLIGYNNYSLNSRASSYLNNYGQGYSMSPIGGFGVRMDGRFSPLT 238
Query: 239 VGRSGY-PLLSPNYGSELNFELPLSQN--ESANFTSNFVIGRALNSSYNGSPSRYNNAMG 295
GR+G+ P + YG +N E LS N ++NF +N GR + Y+G+ SRY +G
Sbjct: 239 GGRTGFTPFGNTGYGMGMNLESGLSPNFGGNSNFGNNLGYGRIFSPFYSGNSSRYATPIG 298
Query: 296 YAGSSIGNNATISSSSINQNLWGNGNLYGATNPATSNAFVGYGSENXXXXXXXXXXXXXX 355
Y G + ++ ++S+S +N+WGNG L A NP + AF+G G
Sbjct: 299 YNGGNGRGDSLMNSTS--RNVWGNGGLSNANNPVSPGAFLGSGG--GAFGVSIGNSGTNW 354
Query: 356 XXXXNNQAGTIGSGYGKGSLSYRSGDVILGSKTVDYGRSSESTVASAPLYTLSNGNYDEA 415
Q G SGY G+ Y GD G V YGR+S + + + S G YD +
Sbjct: 355 GAAIQGQGGGAASGYATGNNVYEGGDSSFGLGGVGYGRNSNAVANPSSTFNASAGGYDGS 414
Query: 416 FKDTYE--AGPFYRDQTWRSSASELDDSGSLGLGFENAVSDLMSKGSGGHIGAYAVASRQ 473
+ D Y +G Y D WRS+ SE+D SGS G SD K S G+IG+Y VASRQ
Sbjct: 415 YGDLYRSGSGSVYNDSAWRSATSEIDGSGSFSYGLGGIASDDPVKTSEGYIGSYNVASRQ 474
Query: 474 SNR 476
NR
Sbjct: 475 PNR 477
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 253 bits (647), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 115/194 (59%), Positives = 147/194 (75%), Gaps = 4/194 (2%)
Query: 1 MEMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVA 60
M+ D GKLFIGGISWDTNEE+L+++F N+GDV+ +M+++ TG+ RGFGFVVF+DPSV
Sbjct: 1 MDSDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVL 60
Query: 61 ERVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXX----XXRTKKIFVGGLP 116
+RV+ +KHVIDGRTV+AK+A R+DQ RTKKIFVGGLP
Sbjct: 61 DRVLEDKHVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLP 120
Query: 117 STITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGK 176
T+ E F+ YF+ +G +TDVVVMYD NT RPRGFGFITFD+EE V++VL+KTFH+LNGK
Sbjct: 121 PTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGK 180
Query: 177 MVEVKRAVPKELSP 190
VEVKRA+PK+ +P
Sbjct: 181 QVEVKRALPKDANP 194
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 253 bits (647), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 115/194 (59%), Positives = 147/194 (75%), Gaps = 4/194 (2%)
Query: 1 MEMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVA 60
M+ D GKLFIGGISWDTNEE+L+++F N+GDV+ +M+++ TG+ RGFGFVVF+DPSV
Sbjct: 1 MDSDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVL 60
Query: 61 ERVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXX----XXRTKKIFVGGLP 116
+RV+ +KHVIDGRTV+AK+A R+DQ RTKKIFVGGLP
Sbjct: 61 DRVLEDKHVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLP 120
Query: 117 STITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGK 176
T+ E F+ YF+ +G +TDVVVMYD NT RPRGFGFITFD+EE V++VL+KTFH+LNGK
Sbjct: 121 PTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGK 180
Query: 177 MVEVKRAVPKELSP 190
VEVKRA+PK+ +P
Sbjct: 181 QVEVKRALPKDANP 194
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 97/192 (50%), Positives = 126/192 (65%), Gaps = 5/192 (2%)
Query: 1 MEMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVA 60
M+ D KLF+GGIS +T E+ L+ +F +GDV+ + I DRTT RGFGFV F+D S A
Sbjct: 5 MDSDKAKLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSA 64
Query: 61 ERVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXX-----XXXXXXXXXXXXRTKKIFVGGL 115
+ + H I GR VE +KA+PR +Q RTKKIFVGGL
Sbjct: 65 HNALQDTHAILGRKVEVRKAIPRSEQLQQNQLQNRGGNSYSGYECGNEHIRTKKIFVGGL 124
Query: 116 PSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNG 175
P+ ++ +FK YF++FG ITDVVVM D T RPRGFGFITFDSE+ V+ V+ ++FH+LNG
Sbjct: 125 PANMSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQSVMMRSFHDLNG 184
Query: 176 KMVEVKRAVPKE 187
+ VEVKRAVP+E
Sbjct: 185 RQVEVKRAVPRE 196
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 124/191 (64%), Gaps = 16/191 (8%)
Query: 5 PGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV 64
PGK+FIGG++ +T + ++F +G++ ++VIMKDR TG+ RGFGF+ +ADPSV ++V+
Sbjct: 44 PGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVI 103
Query: 65 MEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
+ H+I+ + VE K+ +PR RTKKIFVGG+PS +TE +F
Sbjct: 104 EDSHIINSKQVEIKRTIPR--------------GAVGSKDFRTKKIFVGGIPSNVTEDEF 149
Query: 125 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL-YKTFHELNGKMVEVKRA 183
+++F ++G + D +M DH+T R RGFGF+TFD+EE V+ +L E G VE+K+A
Sbjct: 150 RDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSMGNKIEFAGTQVEIKKA 209
Query: 184 VPKEL-SPSPS 193
PK+ +P PS
Sbjct: 210 EPKKANAPPPS 220
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 160 bits (405), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/224 (39%), Positives = 134/224 (59%), Gaps = 16/224 (7%)
Query: 5 PGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV 64
PGK+FIGG++ DT E +YF+ +G++ ++VIMKDR TGR RGFGF+ +AD SV ++V+
Sbjct: 17 PGKIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVI 76
Query: 65 MEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
E H+I+ + VE K+ +P+ +TKKIFVGG+P+T++E +
Sbjct: 77 QENHIINDKQVEIKRTIPK--------------GASQTNDFKTKKIFVGGIPATVSEDEL 122
Query: 125 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK-TFHELNGKMVEVKRA 183
K +F + G + + ++ DH T+R RGFGF+ FDS++ V+ +L +++ VE+K+A
Sbjct: 123 KIFFSKHGNVVEHEIIRDHTTKRSRGFGFVVFDSDKAVDNLLADGNMIDMDDTQVEIKKA 182
Query: 184 VPKELSPSPSRGQLGGYSYAMSRVGSFANGFTQGYNPGMVGGHG 227
PK+ S S S G S A S G F GF Y GG+G
Sbjct: 183 EPKKSSNSSSFPSFGSDSRARSYNGGFG-GFDDSYGSFPGGGYG 225
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 117/200 (58%), Gaps = 17/200 (8%)
Query: 3 MDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 62
M+ KL + GI WD + E L++Y +G++ + ++MK+R+TGR+RGFG+V FA A+
Sbjct: 1 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKE 60
Query: 63 VVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 122
V+ +HV+ R +E K A P+++ + +IFV +P ++TE
Sbjct: 61 VLSGEHVLGDRMLEVKVATPKEEMR--------------APAKKVTRIFVARIPPSVTEE 106
Query: 123 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKR 182
F+++F+++G ITD+ + D ++ RG GFITF + E VE ++ +T HEL G V V R
Sbjct: 107 TFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSET-HELGGSAVVVDR 165
Query: 183 AVPKE--LSPSPSRGQLGGY 200
A PKE + P+ Q GGY
Sbjct: 166 ATPKEDDVKPTGRMSQGGGY 185
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 85/210 (40%), Gaps = 32/210 (15%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
++F+ I EE R +F+ +GD+ + + KD+ + RG GF+ F + E ++ E
Sbjct: 93 RIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSE 152
Query: 67 KHVIDGRTVEAKKAVPR-DDQNXXXXXXXXXXXXXXXXXXRT------------------ 107
H + G V +A P+ DD T
Sbjct: 153 THELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGP 212
Query: 108 ------------KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFIT 155
KKIFVG LP D + YF +FG I DV + D RGFGF+T
Sbjct: 213 IYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVT 272
Query: 156 FDSEEGVEKVLYKTFHELNGKMVEVKRAVP 185
F ++EGV + HE+ G V + A P
Sbjct: 273 F-ADEGVADRVSLRPHEICGHEVAIDSATP 301
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 44/79 (55%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+G + + N E LRQYF FG + + I +D RGFGFV FAD VA+RV +
Sbjct: 226 KIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLR 285
Query: 67 KHVIDGRTVEAKKAVPRDD 85
H I G V A P DD
Sbjct: 286 PHEICGHEVAIDSATPVDD 304
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 117/200 (58%), Gaps = 17/200 (8%)
Query: 3 MDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 62
M+ KL + GI WD + E L++Y +G++ + ++MK+R+TGR+RGFG+V FA A+
Sbjct: 1 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKE 60
Query: 63 VVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 122
V+ +HV+ R +E K A P+++ + +IFV +P ++TE
Sbjct: 61 VLSGEHVLGDRMLEVKVATPKEEMR--------------APAKKVTRIFVARIPPSVTEE 106
Query: 123 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKR 182
F+++F+++G ITD+ + D ++ RG GFITF + E VE ++ +T HEL G V V R
Sbjct: 107 TFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSET-HELGGSAVVVDR 165
Query: 183 AVPKE--LSPSPSRGQLGGY 200
A PKE + P+ Q GGY
Sbjct: 166 ATPKEDDVKPTGRMSQGGGY 185
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 85/210 (40%), Gaps = 32/210 (15%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
++F+ I EE R +F+ +GD+ + + KD+ + RG GF+ F + E ++ E
Sbjct: 93 RIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSE 152
Query: 67 KHVIDGRTVEAKKAVPR-DDQNXXXXXXXXXXXXXXXXXXRT------------------ 107
H + G V +A P+ DD T
Sbjct: 153 THELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGP 212
Query: 108 ------------KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFIT 155
KKIFVG LP D + YF +FG I DV + D RGFGF+T
Sbjct: 213 IYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVT 272
Query: 156 FDSEEGVEKVLYKTFHELNGKMVEVKRAVP 185
F ++EGV + HE+ G V + A P
Sbjct: 273 F-ADEGVADRVSLRPHEICGHEVAIDSATP 301
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 44/79 (55%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+G + + N E LRQYF FG + + I +D RGFGFV FAD VA+RV +
Sbjct: 226 KIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLR 285
Query: 67 KHVIDGRTVEAKKAVPRDD 85
H I G V A P DD
Sbjct: 286 PHEICGHEVAIDSATPVDD 304
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 117/200 (58%), Gaps = 17/200 (8%)
Query: 3 MDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 62
M+ KL + GI WD + E L++Y +G++ + ++MK+R+TGR+RGFG+V FA A+
Sbjct: 1 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKE 60
Query: 63 VVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 122
V+ +HV+ R +E K A P+++ + +IFV +P ++TE
Sbjct: 61 VLSGEHVLGDRMLEVKVATPKEEMR--------------APAKKVTRIFVARIPPSVTEE 106
Query: 123 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKR 182
F+++F+++G ITD+ + D ++ RG GFITF + E VE ++ +T HEL G V V R
Sbjct: 107 TFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSET-HELGGSAVVVDR 165
Query: 183 AVPKE--LSPSPSRGQLGGY 200
A PKE + P+ Q GGY
Sbjct: 166 ATPKEDDVKPTGRMSQGGGY 185
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 85/210 (40%), Gaps = 32/210 (15%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
++F+ I EE R +F+ +GD+ + + KD+ + RG GF+ F + E ++ E
Sbjct: 93 RIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSE 152
Query: 67 KHVIDGRTVEAKKAVPR-DDQNXXXXXXXXXXXXXXXXXXRT------------------ 107
H + G V +A P+ DD T
Sbjct: 153 THELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGP 212
Query: 108 ------------KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFIT 155
KKIFVG LP D + YF +FG I DV + D RGFGF+T
Sbjct: 213 IYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVT 272
Query: 156 FDSEEGVEKVLYKTFHELNGKMVEVKRAVP 185
F ++EGV + HE+ G V + A P
Sbjct: 273 F-ADEGVADRVSLRPHEICGHEVAIDSATP 301
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 44/79 (55%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+G + + N E LRQYF FG + + I +D RGFGFV FAD VA+RV +
Sbjct: 226 KIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLR 285
Query: 67 KHVIDGRTVEAKKAVPRDD 85
H I G V A P DD
Sbjct: 286 PHEICGHEVAIDSATPVDD 304
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 117/200 (58%), Gaps = 17/200 (8%)
Query: 3 MDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 62
M+ KL + GI WD + E L++Y +G++ + ++MK+R+TGR+RGFG+V FA A+
Sbjct: 1 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKE 60
Query: 63 VVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 122
V+ +HV+ R +E K A P+++ + +IFV +P ++TE
Sbjct: 61 VLSGEHVLGDRMLEVKVATPKEEMR--------------APAKKVTRIFVARIPPSVTEE 106
Query: 123 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKR 182
F+++F+++G ITD+ + D ++ RG GFITF + E VE ++ +T HEL G V V R
Sbjct: 107 TFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSET-HELGGSAVVVDR 165
Query: 183 AVPKE--LSPSPSRGQLGGY 200
A PKE + P+ Q GGY
Sbjct: 166 ATPKEDDVKPTGRMSQGGGY 185
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 85/210 (40%), Gaps = 32/210 (15%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
++F+ I EE R +F+ +GD+ + + KD+ + RG GF+ F + E ++ E
Sbjct: 93 RIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSE 152
Query: 67 KHVIDGRTVEAKKAVPR-DDQNXXXXXXXXXXXXXXXXXXRT------------------ 107
H + G V +A P+ DD T
Sbjct: 153 THELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGP 212
Query: 108 ------------KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFIT 155
KKIFVG LP D + YF +FG I DV + D RGFGF+T
Sbjct: 213 IYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVT 272
Query: 156 FDSEEGVEKVLYKTFHELNGKMVEVKRAVP 185
F ++EGV + HE+ G V + A P
Sbjct: 273 F-ADEGVADRVSLRPHEICGHEVAIDSATP 301
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 44/79 (55%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+G + + N E LRQYF FG + + I +D RGFGFV FAD VA+RV +
Sbjct: 226 KIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLR 285
Query: 67 KHVIDGRTVEAKKAVPRDD 85
H I G V A P DD
Sbjct: 286 PHEICGHEVAIDSATPVDD 304
>Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54301450-54296178 | 20130731
Length = 281
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+GG++W+T E +R+YF+ FGD++EAV++ D+ TGR++G+GFV F DP A R +
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 89
Query: 67 K-HVIDGRTVEAKKA 80
VIDGR A
Sbjct: 90 PSPVIDGRRANCNLA 104
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 27/134 (20%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
K+FVGGL + YF+QFG I + VV+ D NT R +G+GF+TF E +
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 89
Query: 169 TFHELNGKMV------------------EVKRAVPKELSPSPSRGQ-LGGYSYAMSRVGS 209
++G+ V+ A P S P+RG +GGY Y
Sbjct: 90 PSPVIDGRRANCNLASHGRPRGPPISYGRVRPASPYVGSLQPARGAYVGGYGYQQP---- 145
Query: 210 FANGFTQGYNPGMV 223
+ GY GMV
Sbjct: 146 ----LSYGYQQGMV 155
>Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54300708-54296502 | 20130731
Length = 372
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+GG++W+T E +R+YF+ FGD++EAV++ D+ TGR++G+GFV F DP A R +
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 89
Query: 67 KH-VIDGRTVEAKKA 80
VIDGR A
Sbjct: 90 PSPVIDGRRANCNLA 104
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 27/134 (20%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
K+FVGGL + YF+QFG I + VV+ D NT R +G+GF+TF E +
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACAD 89
Query: 169 TFHELNGKMV------------------EVKRAVPKELSPSPSRGQ-LGGYSYAMSRVGS 209
++G+ V+ A P S P+RG +GGY Y
Sbjct: 90 PSPVIDGRRANCNLASHGRPRGPPISYGRVRPASPYVGSLQPARGAYVGGYGYQQP---- 145
Query: 210 FANGFTQGYNPGMV 223
+ GY GMV
Sbjct: 146 ----LSYGYQQGMV 155
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 96/191 (50%), Gaps = 19/191 (9%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
KLF+ G+S +T E LR F ++GD+ EA+++ D+ TGR++G+GFVV+
Sbjct: 77 KLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVY------------ 124
Query: 67 KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKN 126
+HV DG + K+ P + ++K+FVG +P ++ +
Sbjct: 125 RHV-DGAVLALKE--PSKKIDGRMTVTQLAAAGSTGGDVSSRKVFVGNVPFEVSAESLLS 181
Query: 127 YFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRAV-- 184
F ++G I + + +D + + RGF F + +EEG + + ++ ++G V K AV
Sbjct: 182 EFSKYGEIEEGPLGFDKASGKTRGFAFFVYKTEEGAKNSVAESMKTVDGHQVICKFAVDN 241
Query: 185 --PKELSPSPS 193
PK + +PS
Sbjct: 242 KKPKPVGQNPS 252
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 51/68 (75%), Gaps = 1/68 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+GG++W+T + +R YF+ FGD++EAVI+ D+ TG+++G+GFV F DP A R +
Sbjct: 17 KVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACAD 76
Query: 67 KH-VIDGR 73
+ VIDGR
Sbjct: 77 PNPVIDGR 84
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 166
K+FVGGL + + YF+QFG I + V++ D NT + +G+GF+TF E +
Sbjct: 17 KVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRAC 74
>Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 282
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
KLF+GG++W+T E +R YF+ FG+++EAV++ D+ TGR++G+GFV F DP A R
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQN 85
Query: 67 KH-VIDGRTVEAKKA 80
VIDGR A
Sbjct: 86 PSPVIDGRRANCNIA 100
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 166
K+FVGGL + YF+QFG I + VV+ D T R +G+GF+TF E +
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRAC 83
>Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 280
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
KLF+GG++W+T E +R YF+ FG+++EAV++ D+ TGR++G+GFV F DP A R
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQN 85
Query: 67 KH-VIDGRTVEAKKA 80
VIDGR A
Sbjct: 86 PSPVIDGRRANCNIA 100
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 166
K+FVGGL + YF+QFG I + VV+ D T R +G+GF+TF E +
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRAC 83
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
KLFI G+ WDT E LR F +G++ EA+++ D+ TG+++G+GFV F A + E
Sbjct: 74 KLFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFLHVDGALLALRE 133
Query: 67 K-HVIDGR-TVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
IDGR TV A N +KI+V +P +
Sbjct: 134 PSKRIDGRVTVTQLAAAGNSGSNTNAADVA------------QRKIYVSNVPPDLPGDKL 181
Query: 125 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRAV 184
+F +G I + + +D T R +GF + + EG + + + G+ + K A+
Sbjct: 182 LAHFSIYGEIEEGPLGFDKQTGRSKGFALFVYKTPEGANAAVSEPVKNVEGRQLNCKLAI 241
>Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:12141158-12149871 | 20130731
Length = 272
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+GG++W+T +E +++YF+ FG+++EAV++ D+ TGR++G+GFV F +P A R ++
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVD 76
Query: 67 -KHVIDGRTVEAKKA 80
+IDGR A
Sbjct: 77 AAPIIDGRRANCNLA 91
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
K+FVGGL + K YF+QFG I + VV+ D T R +G+GF+TF + +
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVD 76
Query: 169 TFHELNGKMVEVKRAVPKELSPSPSRGQLGGYSYAMSRVGSFANGF 214
++G+ A PS + GG + +GSF GF
Sbjct: 77 AAPIIDGRRANCNLASLGVQRSKPSTPKHGGGGRNIRVMGSFQTGF 122
>Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:12141158-12149871 | 20130731
Length = 267
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+GG++W+T +E +++YF+ FG+++EAV++ D+ TGR++G+GFV F +P A R ++
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVD 76
Query: 67 -KHVIDGRTVEAKKA 80
+IDGR A
Sbjct: 77 AAPIIDGRRANCNLA 91
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
K+FVGGL + K YF+QFG I + VV+ D T R +G+GF+TF + +
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVD 76
Query: 169 TFHELNGKMVEVKRAVPKELSPSPSRGQLGGYSYAMSRVGSFANGF 214
++G+ A PS + GG + +GSF GF
Sbjct: 77 AAPIIDGRRANCNLASLGVQRSKPSTPKHGGGGRNIRVMGSFQTGF 122
>Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+GG++W+T + L++YF FGD++EAV++ DRTTG+++G+GFV F DP+ A
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 67 KH-VIDGRTVEAKKAVPRDD 85
+ +IDGR A + D
Sbjct: 87 PNPMIDGRRANCNLAYQKPD 106
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITF 156
KIFVGGL K YFDQFG I + VV+ D T + +G+GF+TF
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTF 74
>Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+GG++W+T + L++YF FGD++EAV++ DRTTG+++G+GFV F DP+ A
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 67 KH-VIDGRTVEAKKAVPRDD 85
+ +IDGR A + D
Sbjct: 87 PNPMIDGRRANCNLAYQKPD 106
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITF 156
KIFVGGL K YFDQFG I + VV+ D T + +G+GF+TF
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTF 74
>Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251226-42253109 | 20130731
Length = 251
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+GG++W+T + L++YF FGD++EAV++ DRTTG+++G+GFV F DP+ A
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 67 KH-VIDGRTVEAKKAVPRDD 85
+ +IDGR A + D
Sbjct: 87 PNPMIDGRRANCNLAYQKPD 106
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITF 156
KIFVGGL K YFDQFG I + VV+ D T + +G+GF+TF
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTF 74
>Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253164 | 20130731
Length = 250
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+GG++W+T + L++YF FGD++EAV++ DRTTG+++G+GFV F DP+ A
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 67 KH-VIDGRTVEAKKAVPRDD 85
+ +IDGR A + D
Sbjct: 87 PNPMIDGRRANCNLAYQKPD 106
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITF 156
KIFVGGL K YFDQFG I + VV+ D T + +G+GF+TF
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTF 74
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 12/155 (7%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 64
K+F+G + +D + E+L Q F+ G V A ++ +R T R+RGFGFV + ER V
Sbjct: 123 KIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNK 182
Query: 65 MEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
+DGR + KA PR + +VG LP + S
Sbjct: 183 FSGFELDGRLLTVNKAAPRGTPRLRQPRTFNSGL----------RAYVGNLPWDVDNSSL 232
Query: 125 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSE 159
+ F + G + V+YD T R RGFGF+T +E
Sbjct: 233 EQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNE 267
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
KIFVG LP + F+Q GT+ V+Y+ +T R RGFGF+T + E VE+ + K
Sbjct: 123 KIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNK 182
Query: 169 -TFHELNGKMVEVKRAVPK 186
+ EL+G+++ V +A P+
Sbjct: 183 FSGFELDGRLLTVNKAAPR 201
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 3 MDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 62
M KLFIGG+S+ T+E LR+ F +GDV++A I+ DR TGR+RGFGF+ FA A
Sbjct: 37 MSSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASS 96
Query: 63 VV--MEKHVIDGRTVEAKKAVPR 83
+ M+ +DGRTV A R
Sbjct: 97 ALQAMDNKELDGRTVRVNYATER 119
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 107 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITF-DSEEGVEKV 165
+ K+F+GG+ + E+ + F ++G + D ++ D +T R RGFGFITF SEE +
Sbjct: 39 SAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSAL 98
Query: 166 LYKTFHELNGKMVEVKRAVPK 186
EL+G+ V V A +
Sbjct: 99 QAMDNKELDGRTVRVNYATER 119
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 3 MDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 62
M KLFIGG+S+ T+E LR+ F +GDV++A I+ DR TGR+RGFGF+ FA A
Sbjct: 37 MSSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASS 96
Query: 63 VV--MEKHVIDGRTVEAKKAVPR 83
+ M+ +DGRTV A R
Sbjct: 97 ALQAMDNKELDGRTVRVNYATER 119
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 107 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITF-DSEEGVEKV 165
+ K+F+GG+ + E+ + F ++G + D ++ D +T R RGFGFITF SEE +
Sbjct: 39 SAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSAL 98
Query: 166 LYKTFHELNGKMVEVKRAVPK 186
EL+G+ V V A +
Sbjct: 99 QAMDNKELDGRTVRVNYATER 119
>Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr7:48649576-48651271 | 20130731
Length = 253
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 52/68 (76%), Gaps = 1/68 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+GG++W+T ++ LR++F+ +GD++EAVI+ D+ TGR++G+GFV F D A++ E
Sbjct: 19 KVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACEE 78
Query: 67 KHV-IDGR 73
V I+GR
Sbjct: 79 PTVIINGR 86
>Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr7:48649613-48651189 | 20130731
Length = 256
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 52/68 (76%), Gaps = 1/68 (1%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+GG++W+T ++ LR++F+ +GD++EAVI+ D+ TGR++G+GFV F D A++ E
Sbjct: 19 KVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACEE 78
Query: 67 KHV-IDGR 73
V I+GR
Sbjct: 79 PTVIINGR 86
>Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 81/186 (43%), Gaps = 10/186 (5%)
Query: 2 EMDPG--KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSV 59
++DP K+F+ G+ WD E L F +G++ + + D+ +G+++G+ F++F +
Sbjct: 159 DVDPAHRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTG 218
Query: 60 AERVVME-KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPST 118
R + + + VI RT + A +KIFV + S
Sbjct: 219 CRRALKQPQKVIGNRTTSCQLA-------SAGPVPAPPPNAPPVSEYTQRKIFVSNVSSD 271
Query: 119 ITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 178
I +F QFG + D + D T +P+GF + + E +K L + G +
Sbjct: 272 IDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKVFEGHTL 331
Query: 179 EVKRAV 184
++AV
Sbjct: 332 YCQKAV 337
>Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 81/186 (43%), Gaps = 10/186 (5%)
Query: 2 EMDPG--KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSV 59
++DP K+F+ G+ WD E L F +G++ + + D+ +G+++G+ F++F +
Sbjct: 159 DVDPAHRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTG 218
Query: 60 AERVVME-KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPST 118
R + + + VI RT + A +KIFV + S
Sbjct: 219 CRRALKQPQKVIGNRTTSCQLA-------SAGPVPAPPPNAPPVSEYTQRKIFVSNVSSD 271
Query: 119 ITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 178
I +F QFG + D + D T +P+GF + + E +K L + G +
Sbjct: 272 IDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKVFEGHTL 331
Query: 179 EVKRAV 184
++AV
Sbjct: 332 YCQKAV 337
>Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 81/186 (43%), Gaps = 10/186 (5%)
Query: 2 EMDPG--KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSV 59
++DP K+F+ G+ WD E L F +G++ + + D+ +G+++G+ F++F +
Sbjct: 159 DVDPAHRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTG 218
Query: 60 AERVVME-KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPST 118
R + + + VI RT + A +KIFV + S
Sbjct: 219 CRRALKQPQKVIGNRTTSCQLA-------SAGPVPAPPPNAPPVSEYTQRKIFVSNVSSD 271
Query: 119 ITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 178
I +F QFG + D + D T +P+GF + + E +K L + G +
Sbjct: 272 IDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKVFEGHTL 331
Query: 179 EVKRAV 184
++AV
Sbjct: 332 YCQKAV 337
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 13/189 (6%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVF--ADPSVAERVV 64
+LF+G + + + +L + F+N GDV ++ D++TGR+RGFGFV A A
Sbjct: 85 RLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQ 144
Query: 65 MEKHVIDGRTVEAKKAVP--------RDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLP 116
+ +V+DGR + P R +N ++ VG L
Sbjct: 145 LNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLA 204
Query: 117 STITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFH--ELN 174
+ ++ F + G + + V+YD + R RGFGF+TF S + V+ + +T +LN
Sbjct: 205 WGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAI-RTLDGADLN 263
Query: 175 GKMVEVKRA 183
G+ + V A
Sbjct: 264 GRAIRVSPA 272
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 13/189 (6%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVF--ADPSVAERVV 64
+LF+G + + + +L + F+N GDV ++ D++TGR+RGFGFV A A
Sbjct: 85 RLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQ 144
Query: 65 MEKHVIDGRTVEAKKAVP--------RDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLP 116
+ +V+DGR + P R +N ++ VG L
Sbjct: 145 LNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLA 204
Query: 117 STITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFH--ELN 174
+ ++ F + G + + V+YD + R RGFGF+TF S + V+ + +T +LN
Sbjct: 205 WGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAI-RTLDGADLN 263
Query: 175 GKMVEVKRA 183
G+ + V A
Sbjct: 264 GRAIRVSPA 272
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 2 EMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVF-ADPSVA 60
M KLFIGG+S++ +++ LR F +GDVVEA ++ DR TGR+RGFGFV F ++ S
Sbjct: 32 HMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESAT 91
Query: 61 ERVVMEKHVIDGRTVEAKKAVPR 83
+ M+ ++GR + A R
Sbjct: 92 SALSMDGQDLNGRNIRVSYANDR 114
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 107 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 166
+ K+F+GGL + + ++ F +G + + V+ D T R RGFGF+ F SEE L
Sbjct: 35 SSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL 94
Query: 167 YKTFHELNGKMVEVKRAVPKE 187
+LNG+ + V A ++
Sbjct: 95 SMDGQDLNGRNIRVSYANDRQ 115
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 13/174 (7%)
Query: 8 LFIGGISWDTNEERLRQYFQN-FGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
+F+G ++ D + L + F + + V A ++ D TGR++G+GFV F D S + + +
Sbjct: 192 IFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQ 251
Query: 67 KH--VIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
+ R + A PR IFVGGL S +T+ D
Sbjct: 252 MNGVYCSSRPMRIGAATPRKSSGHQPGGQSNGTSSQSEADSTNTTIFVGGLDSNVTDEDL 311
Query: 125 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 178
K F Q+G I V + +G GF+ F + E+ L K LNG M+
Sbjct: 312 KQTFSQYGEIASVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTMI 355
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 85/200 (42%), Gaps = 19/200 (9%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 67
L+IG + +E L + F + G++ +++++ +G + G+GF F + AE+V+
Sbjct: 99 LWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQNY 158
Query: 68 HVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKNY 127
A +P DQ IFVG L + +T+S
Sbjct: 159 ---------AGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHET 209
Query: 128 F-DQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNG-----KMVEVK 181
F + ++ V+YD NT R +G+GF+ F G E + ++NG + + +
Sbjct: 210 FSSSYPSVKAAKVVYDANTGRSKGYGFVRF----GDESERSQAMTQMNGVYCSSRPMRIG 265
Query: 182 RAVPKELSPSPSRGQLGGYS 201
A P++ S GQ G S
Sbjct: 266 AATPRKSSGHQPGGQSNGTS 285
>Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 77/179 (43%), Gaps = 1/179 (0%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+ G+ WDT L F +G++ + + D+ +G+++G+GF++F S A + E
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKE 187
Query: 67 -KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 125
+ I R + A Q +KI++ + +
Sbjct: 188 PQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLF 247
Query: 126 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRAV 184
+F +FG I + + D T +P+GF + S E + L + E G ++ ++A+
Sbjct: 248 GFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAI 306
>Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 77/179 (43%), Gaps = 1/179 (0%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+ G+ WDT L F +G++ + + D+ +G+++G+GF++F S A + E
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKE 187
Query: 67 -KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 125
+ I R + A Q +KI++ + +
Sbjct: 188 PQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLF 247
Query: 126 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRAV 184
+F +FG I + + D T +P+GF + S E + L + E G ++ ++A+
Sbjct: 248 GFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAI 306
>Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 77/179 (43%), Gaps = 1/179 (0%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+ G+ WDT L F +G++ + + D+ +G+++G+GF++F S A + E
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKE 187
Query: 67 -KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 125
+ I R + A Q +KI++ + +
Sbjct: 188 PQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLF 247
Query: 126 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRAV 184
+F +FG I + + D T +P+GF + S E + L + E G ++ ++A+
Sbjct: 248 GFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAI 306
>Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 77/179 (43%), Gaps = 1/179 (0%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+ G+ WDT L F +G++ + + D+ +G+++G+GF++F S A + E
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKE 187
Query: 67 -KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 125
+ I R + A Q +KI++ + +
Sbjct: 188 PQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLF 247
Query: 126 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRAV 184
+F +FG I + + D T +P+GF + S E + L + E G ++ ++A+
Sbjct: 248 GFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAI 306
>Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304246-34300290 | 20130731
Length = 492
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 81/189 (42%), Gaps = 4/189 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
K+F+ G+ WDT L F +G++ + + D+ +G+++G+GF++F S A + E
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKE 187
Query: 67 -KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 125
+ I R + A Q +KI++ + +
Sbjct: 188 PQKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLF 247
Query: 126 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRAVP 185
+F +FG I + + D T +P+GF + S E + L + E G ++ ++A+
Sbjct: 248 GFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAID 307
Query: 186 KELSPSPSR 194
P P++
Sbjct: 308 ---GPKPTK 313
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 9/174 (5%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 67
+++ IS + +E L+Q F FG + A +MKD G++R FGFV F P A V +
Sbjct: 211 VYVKNISEASTDEDLKQLFGPFGMITSATVMKD-ANGKSRCFGFVNFQSPDSAAAAVEKL 269
Query: 68 H---VIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
+ + D + + +A + ++ + +++ L E
Sbjct: 270 NGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGANLYLKNLDDDFNEEKL 329
Query: 125 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 178
K+ F +FGT+T VM D + +G GF+ F + E K L +E+NGK+V
Sbjct: 330 KDLFSEFGTVTSCRVMLDSHGHS-KGSGFVAFSTPEEANKAL----NEMNGKLV 378
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 16/173 (9%)
Query: 6 GKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVM 65
G +FI + + + L F FG V+ + D G+++G+GFV F + A+ +
Sbjct: 118 GNVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALD-GNGQSKGYGFVQFDNEEAAKSAIK 176
Query: 66 EKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 125
+ +DG + D Q + ++V + T+ D K
Sbjct: 177 Q---LDGMLIN-------DKQVYVGFFVRHQERARTNGSPKFTNVYVKNISEASTDEDLK 226
Query: 126 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 178
F FG IT VM D N + R FGF+ F S + + K LNG +
Sbjct: 227 QLFGPFGMITSATVMKDANG-KSRCFGFVNFQSPDSAAAAVEK----LNGTAI 274
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 9/174 (5%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 67
+++ IS + +E L+Q F FG + A +MKD G++R FGFV F P A V +
Sbjct: 211 VYVKNISEASTDEDLKQLFGPFGMITSATVMKD-ANGKSRCFGFVNFQSPDSAAAAVEKL 269
Query: 68 H---VIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
+ + D + + +A + ++ + +++ L E
Sbjct: 270 NGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGANLYLKNLDDDFNEEKL 329
Query: 125 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 178
K+ F +FGT+T VM D + +G GF+ F + E K L +E+NGK+V
Sbjct: 330 KDLFSEFGTVTSCRVMLDSHGHS-KGSGFVAFSTPEEANKAL----NEMNGKLV 378
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 16/173 (9%)
Query: 6 GKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVM 65
G +FI + + + L F FG V+ + D G+++G+GFV F + A+ +
Sbjct: 118 GNVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALD-GNGQSKGYGFVQFDNEEAAKSAIK 176
Query: 66 EKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 125
+ +DG + D Q + ++V + T+ D K
Sbjct: 177 Q---LDGMLIN-------DKQVYVGFFVRHQERARTNGSPKFTNVYVKNISEASTDEDLK 226
Query: 126 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 178
F FG IT VM D N + R FGF+ F S + + K LNG +
Sbjct: 227 QLFGPFGMITSATVMKDANG-KSRCFGFVNFQSPDSAAAAVEK----LNGTAI 274
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 2 EMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVF-ADPSVA 60
M KLFIGG+S++ +++ LR F +GDVVEA ++ DR TGR+RGFGFV F ++ S
Sbjct: 32 HMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESAT 91
Query: 61 ERVVMEKHVI 70
+ M+ V+
Sbjct: 92 SALSMDGQVV 101
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 107 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 166
+ K+F+GGL + + ++ F +G + + V+ D T R RGFGF+ F SEE L
Sbjct: 35 SSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL 94
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 78/181 (43%), Gaps = 10/181 (5%)
Query: 6 GKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVM 65
KLF+G +D + E+L F G V A ++ +R T +RGFGFV + AE V
Sbjct: 109 AKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVE 168
Query: 66 EKHVID--GRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESD 123
+ + D GR++ KA P+ + +I+V L + S
Sbjct: 169 KFNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVL-------RIYVANLAWEVDNSR 221
Query: 124 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITF-DSEEGVEKVLYKTFHELNGKMVEVKR 182
+ F + G I V+YD T R RGFGF+T D E + + L G+ + V
Sbjct: 222 LEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVSV 281
Query: 183 A 183
A
Sbjct: 282 A 282
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 64
++++ ++W+ + RL Q F G +V A ++ DR TGR+RGFGFV +D + +
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAA 266
Query: 65 MEKHVIDGRTVEAKKAVPR 83
++ ++GRT+ A R
Sbjct: 267 LDGQSLEGRTIRVSVAEDR 285
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 69/156 (44%), Gaps = 9/156 (5%)
Query: 6 GKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVM 65
KLF+G +D + E+L F G V A ++ +R T +RGFGFV + AE V
Sbjct: 109 AKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVE 168
Query: 66 EKHVID--GRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESD 123
+ + D GR++ KA P+ + +I+V L + S
Sbjct: 169 KFNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVL-------RIYVANLAWEVDNSR 221
Query: 124 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSE 159
+ F + G I V+YD T R RGFGF+T E
Sbjct: 222 LEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDE 257
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 3 MDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFA--DPSVA 60
M KL++GGIS+ T++ LR+ F +GDV++A ++ DR GR++GFGFV FA + + A
Sbjct: 37 MSSAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASA 96
Query: 61 ERVVMEKHVIDGRTVEAKKAVPR 83
M+ + GRTV A R
Sbjct: 97 ALQAMDNQELHGRTVRVNYAQER 119
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 74/154 (48%), Gaps = 28/154 (18%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
++FIGG+ DT+++ +R+ + GD+VE ++KDR TG ++G+ FV + VA++ + +
Sbjct: 105 EVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDD 164
Query: 67 KH--VIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
H G+T+ ++F+G +P T TE +F
Sbjct: 165 IHNKEFKGKTLRC------------------------LLSETKHRLFIGNIPKTWTEDEF 200
Query: 125 KNYFDQFGT-ITDVVVMYD-HNTQRPRGFGFITF 156
+ + G + + ++ D N R RGF F+ +
Sbjct: 201 RKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLY 234
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 74/154 (48%), Gaps = 28/154 (18%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
++FIGG+ DT+++ +R+ + GD+VE ++KDR TG ++G+ FV + VA++ + +
Sbjct: 105 EVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDD 164
Query: 67 KH--VIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
H G+T+ ++F+G +P T TE +F
Sbjct: 165 IHNKEFKGKTLRC------------------------LLSETKHRLFIGNIPKTWTEDEF 200
Query: 125 KNYFDQFGT-ITDVVVMYD-HNTQRPRGFGFITF 156
+ + G + + ++ D N R RGF F+ +
Sbjct: 201 RKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLY 234
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 74/154 (48%), Gaps = 28/154 (18%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
++FIGG+ DT+++ +R+ + GD+VE ++KDR TG ++G+ FV + VA++ + +
Sbjct: 105 EVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDD 164
Query: 67 KH--VIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
H G+T+ ++F+G +P T TE +F
Sbjct: 165 IHNKEFKGKTLRC------------------------LLSETKHRLFIGNIPKTWTEDEF 200
Query: 125 KNYFDQFGT-ITDVVVMYD-HNTQRPRGFGFITF 156
+ + G + + ++ D N R RGF F+ +
Sbjct: 201 RKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLY 234
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
KLF+GG+SW +E+ L+ F +FGDV E I+ D+ +GRARGFGFV+F++ A+
Sbjct: 37 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSA--- 93
Query: 67 KHVIDGRTV 75
K +DG+ +
Sbjct: 94 KDAMDGKAL 102
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 37/55 (67%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVE 163
K+FVGGL ++ E K+ F FG +T+V ++YD ++ R RGFGF+ F +E+ +
Sbjct: 37 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAK 91
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
KLFIGG+S+ T+E LR+ F +G+V++A I+ DR TGR+RGFGF+ F A +
Sbjct: 43 KLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAI-- 100
Query: 67 KHVIDGRTVEAKK 79
+DG+ + ++
Sbjct: 101 -QALDGQDLHGRR 112
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 107 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDS-EEGVEKV 165
T K+F+GG+ + E+ + F ++G + D ++ D T R RGFGFITF+S EE +
Sbjct: 41 TTKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAI 100
Query: 166 LYKTFHELNGKMVEVKRA 183
+L+G+ V V A
Sbjct: 101 QALDGQDLHGRRVRVNYA 118
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 64
+ F+GG++W T+ E L + F +G+++++ I+ DR TGR+RGFGFV FAD +
Sbjct: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
Query: 65 MEKHVIDGRTVEAKKA 80
M +DGR + +A
Sbjct: 69 MNGQDMDGRNITVNEA 84
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 64
+ F+GG++W T+ + L Q F FG++ ++ ++ DR TGR+RGFGFV FA+ +
Sbjct: 9 RCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEE 68
Query: 65 MEKHVIDGRTVEAKKA 80
M IDGR + +A
Sbjct: 69 MNGQDIDGRNITVNEA 84
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
+ FVGGL + F +FG ITD V+ D T R RGFGF+TF EK +
Sbjct: 9 RCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTF----AEEKSMRD 64
Query: 169 TFHELNGKMVE 179
E+NG+ ++
Sbjct: 65 AIEEMNGQDID 75
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 86/184 (46%), Gaps = 7/184 (3%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--M 65
L++ + D +E LR+ F +FG ++ + KD + G ++GFGFV F +P A+R + M
Sbjct: 191 LYMKNLDLDISETLLREKFSSFGKIISLAVAKD-SNGMSKGFGFVNFDNPEDAKRAMETM 249
Query: 66 EKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 125
+ + + +A + ++ + I+V + +++ +
Sbjct: 250 NGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDEGLR 309
Query: 126 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFH--ELNGKMVEVKRA 183
++F GTIT +M D + +GFGF+ F + E K + +FH +GK + V A
Sbjct: 310 DHFSVCGTITSAKIMRD-DKGISKGFGFVCFSTPEEANKAV-NSFHGFMFHGKPLYVSLA 367
Query: 184 VPKE 187
KE
Sbjct: 368 QRKE 371
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 81/177 (45%), Gaps = 25/177 (14%)
Query: 5 PGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV 64
P L++G + D ++ +L F +F + I +D ++G++ +G+V F P A R +
Sbjct: 9 PASLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAI 68
Query: 65 MEKH--VIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 122
K+ ++G+ + + R D + +FV L +I S
Sbjct: 69 EVKNHSTLNGKAIRVMWS--RRDPDARKSCIG--------------NVFVKNLAESIDNS 112
Query: 123 DFKNYFDQFGTI-TDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 178
++ F +FG I + VVM + + +G+GF+ F++EE + + LNG +V
Sbjct: 113 GLEDMFKKFGNILSSKVVMSEDG--KSKGYGFVQFETEESANAAIER----LNGYLV 163
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 86/186 (46%), Gaps = 21/186 (11%)
Query: 6 GKLFIGGISWDTNEERLRQYFQNFGDVVEA-VIMKDRTTGRARGFGFVVFADPSVAERVV 64
G +F+ ++ + L F+ FG+++ + V+M + G+++G+GFV F A +
Sbjct: 98 GNVFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSE--DGKSKGYGFVQFETEESANAAI 155
Query: 65 --MEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 122
+ +++ + + K V + D+ R +++ L I+E+
Sbjct: 156 ERLNGYLVGDKQIYVGKFVKKSDR------------ISSGPDTRYTNLYMKNLDLDISET 203
Query: 123 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFH--ELNGKMVEV 180
+ F FG I + V D N +GFGF+ FD+ E ++ + +T + +L K++ V
Sbjct: 204 LLREKFSSFGKIISLAVAKDSNGMS-KGFGFVNFDNPEDAKRAM-ETMNGLQLGSKILYV 261
Query: 181 KRAVPK 186
RA K
Sbjct: 262 ARAQKK 267
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 64
KLF+GG+S+ T E+ L F N+G VVEA ++ DR + +++G+GFV FA AE+ +
Sbjct: 33 KLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITE 92
Query: 65 MEKHVIDGRTVEAKKAVP 82
M + ++GR V A P
Sbjct: 93 MNEKALNGRVVFVDYAKP 110
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
K+FVGGL TE + F +G + + V+ D +++ +G+GF+TF S++ EK + +
Sbjct: 33 KLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITE 92
Query: 169 TFHE-LNGKMVEVKRAVP 185
+ LNG++V V A P
Sbjct: 93 MNEKALNGRVVFVDYAKP 110
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 22/155 (14%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE---RV 63
KLF+G + EE +R F+ G+VVE ++KDR TG+ +G F+ +A A+ R
Sbjct: 89 KLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 148
Query: 64 VMEKHVIDGRT--VEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITE 121
+ +H + G ++ + A D + K+FVG L +
Sbjct: 149 LHNRHTLPGGVGPIQVRYA---DGERERLGAVEY-------------KLFVGSLNKQASV 192
Query: 122 SDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITF 156
+ + F ++G I DV +M D Q RG GF+ +
Sbjct: 193 KEVEEVFSKYGRIEDVYLMRDDQKQS-RGCGFVKY 226
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 13/196 (6%)
Query: 4 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 63
D G+L++G + + +L F G VV I+ DR T R+RGF FV A+
Sbjct: 107 DAGRLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEA 166
Query: 64 VMEKHVIDGRTVEAKKA------VPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPS 117
+ + DG V + A VP+ + KI+ G L
Sbjct: 167 I---RMFDGSQVGGRSAKVNFPEVPKGGERLVMGQKVRNSYRGFVDSPH--KIYAGNLGW 221
Query: 118 TITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTF-HELNGK 176
+ D ++ FD+ + ++Y+ + R RGFGF+TF++ E +E L E+ G+
Sbjct: 222 GMNSQDLRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNAMNGVEVQGR 281
Query: 177 MVEVKRAVPKELSPSP 192
+ + A + SPSP
Sbjct: 282 PLRLNLAAAR-TSPSP 296
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 64
+ F+GG++W T+ E L + F +G++V++ I+ DR TGR+RGFGFV FA+ +
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 65 MEKHVIDGRTVEAKKA 80
M +DGR + +A
Sbjct: 67 MNGQDLDGRNITVNQA 82
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 64
+ F+GG++W T+ E L + F +G++V++ I+ DR TGR+RGFGFV FA+ +
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 65 MEKHVIDGRTVEAKKA 80
M +DGR + +A
Sbjct: 67 MNGQDLDGRNITVNQA 82
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 6/157 (3%)
Query: 13 ISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEKH---V 69
+ DT+E+ L++ F +G + AVIMKD G ++ FGFV F P A V + +
Sbjct: 113 LETDTDED-LKKLFSTYGVITSAVIMKDEN-GNSKCFGFVNFQSPDSAAAAVEKLNGTTT 170
Query: 70 IDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKNYFD 129
DG+ + +A + ++ + +++ L +I + K F
Sbjct: 171 NDGKVLYVGRAQRKCEREAELRAKFEQEKIKRYEKLQGANLYLKNLDESINDEKLKEMFS 230
Query: 130 QFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 166
+FGTIT VM+D + +GFGF+ F + E K +
Sbjct: 231 EFGTITSCKVMFDAHGHS-KGFGFVAFSTSEEASKAI 266
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 29/185 (15%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 67
+F+ + + + L F FG V+ + D + G++ G+GFV + D + + +EK
Sbjct: 17 VFVKNLDTSIDNKVLHDTFATFGTVLSCKVALD-SNGKSLGYGFVQY-DNHESAKCAIEK 74
Query: 68 HVIDGRTVEAKKA-----VPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 122
+DG ++ KKA + R +++ + ++V L T T+
Sbjct: 75 --LDGMLIKDKKAFVGYFIRRQERSENGSP-------------KFTNVYVKNLLETDTDE 119
Query: 123 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEE----GVEKVLYKTFHELNGKMV 178
D K F +G IT V+M D N + FGF+ F S + VEK+ T ++ GK++
Sbjct: 120 DLKKLFSTYGVITSAVIMKDENGNS-KCFGFVNFQSPDSAAAAVEKLNGTTTND--GKVL 176
Query: 179 EVKRA 183
V RA
Sbjct: 177 YVGRA 181
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
KLF+GGIS++T+E+ L F +G V++A I+ DR +GR++GFGFV + + E
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTY---NTVEEASSA 101
Query: 67 KHVIDGRTVEAKK 79
+DG+ + ++
Sbjct: 102 IQALDGQDLYGRR 114
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDS-EEGVEKVLY 167
K+FVGG+ E + F ++G + D ++ D + R +GFGF+T+++ EE +
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 168 KTFHELNGKMVEVKRA 183
+L G+ V V A
Sbjct: 105 LDGQDLYGRRVGVNFA 120
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
KLF+GGIS++T+E+ L F +G V++A I+ DR +GR++GFGFV + + E
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTY---NTVEEASSA 101
Query: 67 KHVIDGRTVEAKK 79
+DG+ + ++
Sbjct: 102 IQALDGQDLYGRR 114
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDS-EEGVEKVLY 167
K+FVGG+ E + F ++G + D ++ D + R +GFGF+T+++ EE +
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 168 KTFHELNGKMVEVKRA 183
+L G+ V V A
Sbjct: 105 LDGQDLYGRRVGVNFA 120
>Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 362
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 106/273 (38%), Gaps = 40/273 (14%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
KLF+G + E+ L F+ F V E I+KD+ T +RG FV+ A++ V
Sbjct: 17 KLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 76
Query: 67 KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKN 126
H KK +P K+F+G LP I+E +
Sbjct: 77 CH--------NKKTLP------GASSPLQVKYADGELERLEHKLFIGMLPKNISEVEVSA 122
Query: 127 YFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKT--FHELNGKMV------ 178
F ++GTI D+ ++ + Q +G F+ ++++E L H++ G V
Sbjct: 123 LFSKYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 181
Query: 179 ---EVKRAVPKELSPSPSRGQLGGYSYAMSRVGSFANGFTQGYNPGMVGGHGLRIDG--- 232
E +R + +G S S G+ G+ YN G+G + G
Sbjct: 182 ADTEKERQARRAQKAQSQASNVGHDSQHPSLFGAMPMGYVPPYN-----GYGYQAPGSYG 236
Query: 233 ----RLSPVTVGRSGYPLLSP--NYGSELNFEL 259
R+ P + GY + P N G+ L +L
Sbjct: 237 LMPYRMPPPMQNQPGYHNMMPHMNQGNALRPDL 269
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 106/273 (38%), Gaps = 40/273 (14%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
KLF+G + E+ L F+ F V E I+KD+ T +RG FV+ A++ V
Sbjct: 17 KLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 76
Query: 67 KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKN 126
H KK +P K+F+G LP I+E +
Sbjct: 77 CH--------NKKTLP------GASSPLQVKYADGELERLEHKLFIGMLPKNISEVEVSA 122
Query: 127 YFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKT--FHELNGKMV------ 178
F ++GTI D+ ++ + Q +G F+ ++++E L H++ G V
Sbjct: 123 LFSKYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 181
Query: 179 ---EVKRAVPKELSPSPSRGQLGGYSYAMSRVGSFANGFTQGYNPGMVGGHGLRIDG--- 232
E +R + +G S S G+ G+ YN G+G + G
Sbjct: 182 ADTEKERQARRAQKAQSQASNVGHDSQHPSLFGAMPMGYVPPYN-----GYGYQAPGSYG 236
Query: 233 ----RLSPVTVGRSGYPLLSP--NYGSELNFEL 259
R+ P + GY + P N G+ L +L
Sbjct: 237 LMPYRMPPPMQNQPGYHNMMPHMNQGNALRPDL 269
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 103/273 (37%), Gaps = 39/273 (14%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
KLF+G + E+ L F+ F V E I+KD+ T +RG FV+ A++ V
Sbjct: 17 KLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 76
Query: 67 KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKN 126
H KK +P K+F+G LP I+E +
Sbjct: 77 CH--------NKKTLP------GASSPLQVKYADGELERLEHKLFIGMLPKNISEVEVSA 122
Query: 127 YFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKT--FHELNGKMV------ 178
F ++GTI D+ ++ G F+ ++++E L H++ G V
Sbjct: 123 LFSKYGTIKDLQILRGSQQTSKVGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 182
Query: 179 ---EVKRAVPKELSPSPSRGQLGGYSYAMSRVGSFANGFTQGYNPGMVGGHGLRIDG--- 232
E +R + +G S S G+ G+ YN G+G + G
Sbjct: 183 ADTEKERQARRAQKAQSQASNVGHDSQHPSLFGAMPMGYVPPYN-----GYGYQAPGSYG 237
Query: 233 ----RLSPVTVGRSGYPLLSP--NYGSELNFEL 259
R+ P + GY + P N G+ L +L
Sbjct: 238 LMPYRMPPPMQNQPGYHNMMPHMNQGNALRPDL 270
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 4/179 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
+LF+G + + + +L Q F G+VV I+ D T R+RGF FV + AE +
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAI-- 166
Query: 67 KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKN 126
+ DG TV + + KI+ G L +T +
Sbjct: 167 -RMFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRK 225
Query: 127 YFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTF-HELNGKMVEVKRAV 184
F + + V+Y+ N + RG+GF++F++ E VE L E+ G+ + +K AV
Sbjct: 226 AFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKLAV 284
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 106 RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKV 165
+++++FVG LP +++ S F + G + V ++YD T R RGF F+T + E E+
Sbjct: 106 QSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEA 165
Query: 166 L 166
+
Sbjct: 166 I 166
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 4/179 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
+LF+G + + + +L Q F G+VV I+ D T R+RGF FV + AE +
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAI-- 166
Query: 67 KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKN 126
+ DG TV + + KI+ G L +T +
Sbjct: 167 -RMFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRK 225
Query: 127 YFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTF-HELNGKMVEVKRAV 184
F + + V+Y+ N + RG+GF++F++ E VE L E+ G+ + +K AV
Sbjct: 226 AFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKLAV 284
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 106 RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKV 165
+++++FVG LP +++ S F + G + V ++YD T R RGF F+T + E E+
Sbjct: 106 QSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEA 165
Query: 166 L 166
+
Sbjct: 166 I 166
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 94/248 (37%), Gaps = 26/248 (10%)
Query: 8 LFIGGISWDTNEERLRQYFQN-FGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
+F+G ++ D + L + F + + V A ++ D TGR++G+GFV F D + + E
Sbjct: 189 IFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNE 248
Query: 67 KH--VIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
+ R + A PR IFVGGL + T D
Sbjct: 249 MNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGTPSQSDTDSTNTTIFVGGLDPSATAEDL 308
Query: 125 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRAV 184
+ F Q+G I V + +G GF+ F + E+ L K LNG V K+ V
Sbjct: 309 RQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTTVG-KQTV 357
Query: 185 PKELSPSPSRGQLGGYSYAMSRVGSFANGFTQGYNPGMVGGHGLRIDGRLSPVTVGRSGY 244
+P+ Q S GS NG P GG G P +S Y
Sbjct: 358 RLSWGRNPANKQF------RSEFGSPWNG------PAYYGGPAYDGYGYAMPHPYDQSMY 405
Query: 245 PLLSPNYG 252
P YG
Sbjct: 406 AAAYPMYG 413
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 19/188 (10%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 67
L+IG + + +E L F + G+V+ I++++ TG+ G+GF+ F S AERV+
Sbjct: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVL--- 73
Query: 68 HVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKNY 127
+G +P +Q IFVG L +T+ +
Sbjct: 74 QTYNG------TQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQET 127
Query: 128 F-DQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNG-----KMVEVK 181
F +G++ V+ D NT R +G+GF+ F E + + E+NG + + +
Sbjct: 128 FRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAM----SEMNGVYCSTRPMRIS 183
Query: 182 RAVPKELS 189
A PK+ +
Sbjct: 184 AATPKKTT 191
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 15/180 (8%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 67
+++ +S E+ L+ F +G + AV+M+D GR++ FGFV F + A + V
Sbjct: 213 VYVKNLSESFTEDDLKNEFGAYGTITSAVLMRD-ADGRSKCFGFVNFENAEDAAKAV--- 268
Query: 68 HVIDGRTVEAK-----KAVPRDDQNXXXX-XXXXXXXXXXXXXXRTKKIFVGGLPSTITE 121
++G+ V+ K KA + ++ + +++ L +IT+
Sbjct: 269 EALNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITD 328
Query: 122 SDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVK 181
K F +FGTIT +M D N RG GF+ F + E + L E+NGKM+ K
Sbjct: 329 EKLKEMFSEFGTITSYKIMRDPNGVS-RGSGFVAFSTPEEASRAL----GEMNGKMIVSK 383
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 20/176 (11%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--M 65
+FI + + + L F +FG ++ I D +G+++G+GFV F A+ + +
Sbjct: 122 IFIKNLDKTIDHKALHDTFSSFGQIMSCKIATD-GSGQSKGYGFVQFEAEDSAQNAIDKL 180
Query: 66 EKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 125
+I+ + V + + D++ + ++V L + TE D K
Sbjct: 181 NGMLINDKQVFVGHFLRKQDRDNVLSKT------------KFNNVYVKNLSESFTEDDLK 228
Query: 126 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVK 181
N F +GTIT V+M D + R + FGF+ F++ E K + LNGK V+ K
Sbjct: 229 NEFGAYGTITSAVLMRDADG-RSKCFGFVNFENAEDAAKAV----EALNGKKVDDK 279
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 19/176 (10%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 67
L++G + + N+ +L F G VV + +D T R+ G+G+V F +P A
Sbjct: 34 LYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDA------- 86
Query: 68 HVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKNY 127
R ++ P ++++ T IF+ L TI +
Sbjct: 87 ----ARALDVLNFTPMNNKSIRVMYSHRDPSSRKSG---TANIFIKNLDKTIDHKALHDT 139
Query: 128 FDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRA 183
F FG I + D + Q +G+GF+ F++E+ + + K LNG ++ K+
Sbjct: 140 FSSFGQIMSCKIATDGSGQS-KGYGFVQFEAEDSAQNAIDK----LNGMLINDKQV 190
>Medtr4g036415.1 | splicing factor-like protein | HC |
chr4:13104578-13109685 | 20130731
Length = 767
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 2 EMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE 61
E+D L+IG + ++ L Q FQ FG++V A ++KDR TG ++G+GFV +AD ++A
Sbjct: 447 EIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRITGLSKGYGFVKYADITMAN 506
Query: 62 R--VVMEKHVIDGRTVEAKKA 80
V M + ++GRT+ + A
Sbjct: 507 NAIVAMNGYRLEGRTIAVRVA 527
>Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:3865418-3863915 | 20130731
Length = 138
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 4/58 (6%)
Query: 3 MDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVA 60
M LF+GGIS++T LR++F +G V++A I++DR TGR RGFGFV FA A
Sbjct: 31 MSSANLFLGGISYNT----LRKHFSLYGKVLDAKIIRDRETGRPRGFGFVTFATTEEA 84
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 4 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 63
+P +LF+ + + T EE L ++F FG V +A ++ D+ T R++G ++ F+ P A R
Sbjct: 327 EPCRLFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAARA 386
Query: 64 VMEKH--VIDGRTVEAKKAVPRDDQN 87
+ E + GR + A+PR N
Sbjct: 387 LEESDNSIFQGRLLHVMPAIPRHSNN 412
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
++FV LP + TE + + +F QFG+++ ++ D +T+R +G +I F + E + L +
Sbjct: 330 RLFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAARALEE 389
Query: 169 TFHEL-NGKMVEVKRAVPKELSPSPSRGQLGGYSYAM----SRVGSFANGFTQGYN 219
+ + + G+++ V A+P+ + ++ Q G + R + A G T+ +N
Sbjct: 390 SDNSIFQGRLLHVMPAIPRHSNNEENKNQ-GSKTLKQRREEERKAAEAKGDTRAWN 444
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 11/81 (13%)
Query: 7 KLFIGGI--------SWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPS 58
KLFIGGI S+ T+E LR+ F +G+V++A I+ DR TGR+RGFGF+ F
Sbjct: 43 KLFIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVE 102
Query: 59 VAERVVMEKHVIDGRTVEAKK 79
A + +DG+ + ++
Sbjct: 103 EASSAI---QALDGQDLHGRR 120
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 107 TKKIFVGGLPS--------TITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDS 158
T K+F+GG+ + E+ + F ++G + D ++ D T R RGFGFITF+S
Sbjct: 41 TTKLFIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNS 100
Query: 159 -EEGVEKVLYKTFHELNGKMVEVKRA 183
EE + +L+G+ V V A
Sbjct: 101 VEEASSAIQALDGQDLHGRRVRVNYA 126
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 20/161 (12%)
Query: 9 FIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEKH 68
++G + +EE L + F G VV + KDR T + +G+GFV F A+ + +
Sbjct: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
Query: 69 VID--GRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKN 126
+I G+ + KA +D ++ +F+G L + E +
Sbjct: 88 MIKLYGKPIRVNKAS-QDKKSLDVGA----------------NLFIGNLDPDVDEKLLYD 130
Query: 127 YFDQFGTI-TDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 166
F FG I T+ +M D +T RGFGFI++DS E + +
Sbjct: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAI 171
>Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 183
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 64
+L++ G+S+ T EE LR F+NFG +V+ ++ D+ R RGF F+ +A +++ +
Sbjct: 96 RLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIEG 155
Query: 65 MEKHVIDGRTVEAKKAVPRDD 85
M +DGR + + A PR +
Sbjct: 156 MHGKFLDGRVIFVEVAKPRSE 176
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKV--- 165
+++V GL TE +N F FG + DV ++ D RPRGF F+ + +EE +K
Sbjct: 96 RLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIEG 155
Query: 166 LYKTFHELNGKMVEVKRAVPK 186
++ F L+G+++ V+ A P+
Sbjct: 156 MHGKF--LDGRVIFVEVAKPR 174
>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 78/172 (45%), Gaps = 32/172 (18%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
++++GGI D E L+++ + G+VV+ IMK + +GF FV + + +A + + E
Sbjct: 111 EVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEE 170
Query: 67 KHVID--GRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
+ + GR ++ + ++ ++F+G +P + E D
Sbjct: 171 LNNTEFKGRKIKCSTSQAKN------------------------RLFIGNIPRSWGEKDL 206
Query: 125 KNYFDQFGT-ITDVVVMYD-HNTQRPRGFGFITFD----SEEGVEKVLYKTF 170
K G +T V ++ D N RGF FI + +E G +K++ +F
Sbjct: 207 KKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSF 258
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 102/264 (38%), Gaps = 34/264 (12%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAV-IMKD-RTTGRARGFGFVVFADPSVAERVV 64
+LFIG I E+ L++ + G V AV ++KD + RGF F+ + + AE
Sbjct: 191 RLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEY-- 248
Query: 65 MEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
GR + D N + K ++V LP +T+
Sbjct: 249 -------GRQKMMSPSFKLGD-NSPTVSWADPKNSDSSASSQVKAVYVKNLPKNVTQEQL 300
Query: 125 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKT-FHELNGKMVEVKRA 183
K F+ G IT VV+ + Q GF+ F K L T +EL+G+ +E A
Sbjct: 301 KKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQNLECSLA 360
Query: 184 VPKE-----LSPSPSRGQLGGY-----------SYAMSRVGSFANGFTQG--YNPGMVGG 225
P+ +S + ++G L Y Y G A G Q Y PG G
Sbjct: 361 KPQADQKAVVSNTQTQGLLPSYPPPVGYGLVGNPYGALGAGYGAPGLAQPLMYGPGQTPG 420
Query: 226 HGLRIDGRLSPVTVGRSGYPLLSP 249
G+ + L + GR GY L P
Sbjct: 421 -GMAMMPML--LADGRIGYVLQQP 441
>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 78/172 (45%), Gaps = 32/172 (18%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
++++GGI D E L+++ + G+VV+ IMK + +GF FV + + +A + + E
Sbjct: 111 EVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEE 170
Query: 67 KHVID--GRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
+ + GR ++ + ++ ++F+G +P + E D
Sbjct: 171 LNNTEFKGRKIKCSTSQAKN------------------------RLFIGNIPRSWGEKDL 206
Query: 125 KNYFDQFGT-ITDVVVMYD-HNTQRPRGFGFITFD----SEEGVEKVLYKTF 170
K G +T V ++ D N RGF FI + +E G +K++ +F
Sbjct: 207 KKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSF 258
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 102/264 (38%), Gaps = 34/264 (12%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAV-IMKD-RTTGRARGFGFVVFADPSVAERVV 64
+LFIG I E+ L++ + G V AV ++KD + RGF F+ + + AE
Sbjct: 191 RLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEY-- 248
Query: 65 MEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
GR + D N + K ++V LP +T+
Sbjct: 249 -------GRQKMMSPSFKLGD-NSPTVSWADPKNSDSSASSQVKAVYVKNLPKNVTQEQL 300
Query: 125 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKT-FHELNGKMVEVKRA 183
K F+ G IT VV+ + Q GF+ F K L T +EL+G+ +E A
Sbjct: 301 KKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQNLECSLA 360
Query: 184 VPKE-----LSPSPSRGQLGGY-----------SYAMSRVGSFANGFTQG--YNPGMVGG 225
P+ +S + ++G L Y Y G A G Q Y PG G
Sbjct: 361 KPQADQKAVVSNTQTQGLLPSYPPPVGYGLVGNPYGALGAGYGAPGLAQPLMYGPGQTPG 420
Query: 226 HGLRIDGRLSPVTVGRSGYPLLSP 249
G+ + L + GR GY L P
Sbjct: 421 -GMAMMPML--LADGRIGYVLQQP 441
>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 78/172 (45%), Gaps = 32/172 (18%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
++++GGI D E L+++ + G+VV+ IMK + +GF FV + + +A + + E
Sbjct: 111 EVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEE 170
Query: 67 KHVID--GRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
+ + GR ++ + ++ ++F+G +P + E D
Sbjct: 171 LNNTEFKGRKIKCSTSQAKN------------------------RLFIGNIPRSWGEKDL 206
Query: 125 KNYFDQFGT-ITDVVVMYD-HNTQRPRGFGFITFD----SEEGVEKVLYKTF 170
K G +T V ++ D N RGF FI + +E G +K++ +F
Sbjct: 207 KKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSF 258
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 102/264 (38%), Gaps = 34/264 (12%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAV-IMKD-RTTGRARGFGFVVFADPSVAERVV 64
+LFIG I E+ L++ + G V AV ++KD + RGF F+ + + AE
Sbjct: 191 RLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEY-- 248
Query: 65 MEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
GR + D N + K ++V LP +T+
Sbjct: 249 -------GRQKMMSPSFKLGD-NSPTVSWADPKNSDSSASSQVKAVYVKNLPKNVTQEQL 300
Query: 125 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKT-FHELNGKMVEVKRA 183
K F+ G IT VV+ + Q GF+ F K L T +EL+G+ +E A
Sbjct: 301 KKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQNLECSLA 360
Query: 184 VPKE-----LSPSPSRGQLGGY-----------SYAMSRVGSFANGFTQG--YNPGMVGG 225
P+ +S + ++G L Y Y G A G Q Y PG G
Sbjct: 361 KPQADQKAVVSNTQTQGLLPSYPPPVGYGLVGNPYGALGAGYGAPGLAQPLMYGPGQTPG 420
Query: 226 HGLRIDGRLSPVTVGRSGYPLLSP 249
G+ + L + GR GY L P
Sbjct: 421 -GMAMMPML--LADGRIGYVLQQP 441
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 19/178 (10%)
Query: 8 LFIGGISWDTNEERLRQYFQN-FGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
+F+G ++ D ++ L + F+ + V A ++ DRTTGR +G+GFV FAD S R + E
Sbjct: 169 IFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTE 228
Query: 67 KH--VIDGRTVEAKKAVPRD--DQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 122
+ R + A ++ Q IFVG L +T+
Sbjct: 229 MQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDE 288
Query: 123 DFKNYFDQFGTITDVVVMYDHNTQRPRG--FGFITFDSEEGVEKVLYKTFHELNGKMV 178
K F Q+G + V + P G GF+ F E+ L LNG ++
Sbjct: 289 HLKQVFTQYGELVHVKI--------PSGKRCGFVQFADRSSAEEAL----RVLNGTLL 334
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 82/188 (43%), Gaps = 17/188 (9%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 67
L+IG + + +E L F + G+V +++++ T ++ G+GF+ F + AERV+
Sbjct: 76 LWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAERVL--- 132
Query: 68 HVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKNY 127
+G +P QN IFVG L + +++
Sbjct: 133 QTFNG------TIMPNGGQNFRLNWATFSSGEKRHDDSPDYTIFVGDLAADVSDHHLTEV 186
Query: 128 F-DQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRAVPK 186
F ++ ++ V+ D T R +G+GF+ F E E++ + E+ G + + P
Sbjct: 187 FRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADES--EQM--RAMTEMQGVLCSTR---PM 239
Query: 187 ELSPSPSR 194
+ P+ ++
Sbjct: 240 RIGPASNK 247
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 9/174 (5%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 67
+++ +S E L+Q F +FG + +IMK G ++ FGFV F A V +
Sbjct: 202 VYVKNLSESYTYEDLKQLFNSFGVITSVLIMK-YDNGNSKCFGFVNFQSSDSAATAVEKL 260
Query: 68 H---VIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
+ DG+ + +A + ++ + +++ + ++ E
Sbjct: 261 NGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKSLNEEKL 320
Query: 125 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 178
K F +FGTIT VM D R +G GF+ F + E K + E+NGK++
Sbjct: 321 KELFSEFGTITSCKVMSDARG-RSKGVGFVAFTTPEEASKAI----DEMNGKII 369
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 82/184 (44%), Gaps = 24/184 (13%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 67
LFI + + + L + F FG+V+ + D + G ++G GFV F + A+ + EK
Sbjct: 115 LFIKNLETSIDNKALHETFSVFGNVLSCKVAMD-SNGHSKGHGFVQFDNDQSAKNAI-EK 172
Query: 68 HVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKNY 127
+DG + KK + ++V L + T D K
Sbjct: 173 --LDGMLMNDKKVY-----------VGYFVRCQERSSPKFTNVYVKNLSESYTYEDLKQL 219
Query: 128 FDQFGTITDVVVM-YDHNTQRPRGFGFITFDSEE----GVEKVLYKTFHELNGKMVEVKR 182
F+ FG IT V++M YD+ + FGF+ F S + VEK+ T ++ GK++ V R
Sbjct: 220 FNSFGVITSVLIMKYDNGNS--KCFGFVNFQSSDSAATAVEKLNGSTTND--GKVLFVGR 275
Query: 183 AVPK 186
A K
Sbjct: 276 AQKK 279
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
KLFI G+S++TNE LR F+ G ++E ++ + TG ++G+GFV F + A E
Sbjct: 34 KLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAATARKE 93
Query: 67 KH--VIDGRTVEAKKA 80
H ++DGR + A
Sbjct: 94 LHGQIVDGRRIRVGYA 109
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 16/176 (9%)
Query: 6 GKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVM 65
G +FI + + + L F +FG+++ + D +G+++G+GFV F A++ +
Sbjct: 122 GNIFIKNLDKAIDHKALHDTFSSFGNILSCKVAVD-GSGQSKGYGFVQFDTEEAAQKAI- 179
Query: 66 EKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 125
EK ++G + D Q + +FV L + T+ + K
Sbjct: 180 EK--LNGMLLN-------DKQVYVGPFLRKQERESTGDRAKFNNVFVKNLSESTTDDELK 230
Query: 126 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVK 181
F +FGTIT VVM D + + + FGF+ F+S + + + LNGK ++ K
Sbjct: 231 KTFGEFGTITSAVVMRDGDG-KSKCFGFVNFESTDDAARAV----EALNGKKIDDK 281
>Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:41240036-41242642 | 20130731
Length = 89
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 9/84 (10%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
K+FV L T+ ++ F FG +T+ ++ D NTQRP+GFGF+++ SE EK
Sbjct: 8 KLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKAR-- 65
Query: 169 TFHELNGKMVE-----VKRAVPKE 187
LNG++V+ V+ A PK+
Sbjct: 66 --KALNGRIVDGRLIFVEHAKPKD 87
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE--RVV 64
KLF+ +S+ T +++L F FG + EA ++ D+ T R +GFGFV + AE R
Sbjct: 8 KLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARKA 67
Query: 65 MEKHVIDGRTVEAKKAVPRD 84
+ ++DGR + + A P+D
Sbjct: 68 LNGRIVDGRLIFVEHAKPKD 87
>Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:40168782-40171275 | 20130731
Length = 141
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 64
KLFI G+S T +E+L + F FG ++EA ++ DR +GR++GF FV ++ AE+
Sbjct: 36 KLFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAEKAREG 95
Query: 65 MEKHVIDGRTVEAKKAVPRDDQ 86
M +DG + A PR+ +
Sbjct: 96 MNAKFLDGWVIFVDPAKPREPR 117
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--M 65
LF+ G+S T E LR+ FQ FG+VV A ++ DR +G ++GFGFV +A A + + M
Sbjct: 53 LFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGIEGM 112
Query: 66 EKHVIDGRTVEAKKAVPR 83
+ ++G + A+ A PR
Sbjct: 113 DGKFLEGWVIFAEYARPR 130
>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 354
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 75/169 (44%), Gaps = 30/169 (17%)
Query: 1 MEMDPGK--LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPS 58
+ + P K +++GGI D E L+++ + G+VV+ IMK + +GF FV + +
Sbjct: 103 LSLPPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVE 162
Query: 59 VAERVVMEKHVID--GRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLP 116
+A + + E + + GR ++ + ++ ++F+G +P
Sbjct: 163 LASKAIEELNNTEFKGRKIKCSTSQAKN------------------------RLFIGNIP 198
Query: 117 STITESDFKNYFDQFGT-ITDVVVMYD-HNTQRPRGFGFITFDSEEGVE 163
+ E D K G +T V ++ D N RGF FI + + + E
Sbjct: 199 RSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAE 247
>Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 21/187 (11%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGD-VVEAVIMKD-RTTGRARGFGFVVFADPSVAE--- 61
+LFIG + + E +++ G V+ ++KD +++ R RGF F+ + + + AE
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 62 -RVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTIT 120
++ +D A PR+ + K ++V LP IT
Sbjct: 239 QKMSNSNFKLDNNDAIVSWADPRN--------------SESSSSSQVKAVYVKNLPENIT 284
Query: 121 ESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKT-FHELNGKMVE 179
++ K F+ G IT V + Q +GF+ F K L T +E+NG+ +E
Sbjct: 285 QNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLE 344
Query: 180 VKRAVPK 186
A P+
Sbjct: 345 CSLAKPQ 351
>Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 21/187 (11%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGD-VVEAVIMKD-RTTGRARGFGFVVFADPSVAE--- 61
+LFIG + + E +++ G V+ ++KD +++ R RGF F+ + + + AE
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 62 -RVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTIT 120
++ +D A PR+ + K ++V LP IT
Sbjct: 239 QKMSNSNFKLDNNDAIVSWADPRN--------------SESSSSSQVKAVYVKNLPENIT 284
Query: 121 ESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKT-FHELNGKMVE 179
++ K F+ G IT V + Q +GF+ F K L T +E+NG+ +E
Sbjct: 285 QNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLE 344
Query: 180 VKRAVPK 186
A P+
Sbjct: 345 CSLAKPQ 351
>Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42488464-42483010 | 20130731
Length = 477
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 21/187 (11%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGD-VVEAVIMKD-RTTGRARGFGFVVFADPSVAE--- 61
+LFIG + + E +++ G V+ ++KD +++ R RGF F+ + + + AE
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 62 -RVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTIT 120
++ +D A PR+ + K ++V LP IT
Sbjct: 239 QKMSNSNFKLDNNDAIVSWADPRN--------------SESSSSSQVKAVYVKNLPENIT 284
Query: 121 ESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKT-FHELNGKMVE 179
++ K F+ G IT V + Q +GF+ F K L T +E+NG+ +E
Sbjct: 285 QNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLE 344
Query: 180 VKRAVPK 186
A P+
Sbjct: 345 CSLAKPQ 351
>Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 21/187 (11%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGD-VVEAVIMKD-RTTGRARGFGFVVFADPSVAE--- 61
+LFIG + + E +++ G V+ ++KD +++ R RGF F+ + + + AE
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 62 -RVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTIT 120
++ +D A PR+ + K ++V LP IT
Sbjct: 239 QKMSNSNFKLDNNDAIVSWADPRN--------------SESSSSSQVKAVYVKNLPENIT 284
Query: 121 ESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKT-FHELNGKMVE 179
++ K F+ G IT V + Q +GF+ F K L T +E+NG+ +E
Sbjct: 285 QNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLE 344
Query: 180 VKRAVPK 186
A P+
Sbjct: 345 CSLAKPQ 351
>Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 29/155 (18%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 64
++F+GG+ DT EE L++ FQ G+V+E + K+ +T + RG+ V FA+ A++ +
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 65 MEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
M+ VI G+ P +D + +F+G + +T T+
Sbjct: 479 MKNPVIRGKRC---GTSPSEDNDT---------------------LFLGNICNTWTKEAV 514
Query: 125 KNYFDQFGT--ITDVVVMYD-HNTQRPRGFGFITF 156
K +G + ++ ++ D + RGF F+ F
Sbjct: 515 KQKLKDYGVEGVENITLVPDVQHEGLSRGFAFLEF 549
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER--VV 64
KLF+G ++W E L Q FQ G VV A ++ D TG++RG+GFV +A S + +
Sbjct: 205 KLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAI 264
Query: 65 MEKHVIDGRTVEAKKA 80
M+ ++GRT+ A
Sbjct: 265 MDNVELEGRTLRVSLA 280
>Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 29/155 (18%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 64
++F+GG+ DT EE L++ FQ G+V+E + K+ +T + RG+ V FA+ A++ +
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 65 MEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
M+ VI G+ P +D + +F+G + +T T+
Sbjct: 479 MKNPVIRGKRC---GTSPSEDNDT---------------------LFLGNICNTWTKEAV 514
Query: 125 KNYFDQFGT--ITDVVVMYD-HNTQRPRGFGFITF 156
K +G + ++ ++ D + RGF F+ F
Sbjct: 515 KQKLKDYGVEGVENITLVPDVQHEGLSRGFAFLEF 549
>Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 989
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 29/155 (18%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 64
++F+GG+ DT EE L++ FQ G+V+E + K+ +T + RG+ V FA+ A++ +
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 65 MEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
M+ VI G+ P +D + +F+G + +T T+
Sbjct: 479 MKNPVIRGKRC---GTSPSEDNDT---------------------LFLGNICNTWTKEAV 514
Query: 125 KNYFDQFGT--ITDVVVMYD-HNTQRPRGFGFITF 156
K +G + ++ ++ D + RGF F+ F
Sbjct: 515 KQKLKDYGVEGVENITLVPDVQHEGLSRGFAFLEF 549
>Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 134
Score = 55.8 bits (133), Expect = 9e-08, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER--VV 64
K+F+ G+++ T EE+L + F +G+VV+A I+ ++ R +GFG+V FA+ A + +
Sbjct: 33 KIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIG 92
Query: 65 MEKHVIDGRTVEAKKAVPRDDQN 87
M ++ GR + P + +N
Sbjct: 93 MNGKILHGRVLYVDMDPPNEQKN 115
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 8/177 (4%)
Query: 2 EMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADP-SVA 60
E D +F + E + ++F G V + ++ DR + R++G G++ F D SV
Sbjct: 198 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVP 257
Query: 61 ERVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTIT 120
+ + ++ G+ V K + ++N +K++VG L +T
Sbjct: 258 MAIALSGQLLLGQPVMVKPS--EAEKNLVQSNASSGAAVVGPYGAVDRKLYVGNLHFNMT 315
Query: 121 ESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKM 177
E++ + F+ FG I V + D T +GFGF+ F E K LNGK+
Sbjct: 316 EANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHA-----KAAQSLNGKL 367
>Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 14/168 (8%)
Query: 2 EMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE 61
E+ +L + W + E +R F+ +G V+ V + R RG FV P A
Sbjct: 85 ELSTTRLLAQNVPWSSTTEDVRSLFEKYGKVLH-VELSMYNKNRNRGLAFVEMGSPEEAS 143
Query: 62 RVV--MEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTI 119
+ ++ + DGR + + A P+ ++ T +FV P
Sbjct: 144 EALNSLQSYEFDGRIINIQYAKPKKEKIPPPVERKPI----------TYNLFVANFPYEA 193
Query: 120 TESDFKNYFDQ-FGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 166
D K +FD G + V++ N +RP G+GF+++ S++ ++ L
Sbjct: 194 RSKDVKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEAL 241
>Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 14/168 (8%)
Query: 2 EMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE 61
E+ +L + W + E +R F+ +G V+ V + R RG FV P A
Sbjct: 85 ELSTTRLLAQNVPWSSTTEDVRSLFEKYGKVLH-VELSMYNKNRNRGLAFVEMGSPEEAS 143
Query: 62 RVV--MEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTI 119
+ ++ + DGR + + A P+ ++ T +FV P
Sbjct: 144 EALNSLQSYEFDGRIINIQYAKPKKEKIPPPVERKPI----------TYNLFVANFPYEA 193
Query: 120 TESDFKNYFDQ-FGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 166
D K +FD G + V++ N +RP G+GF+++ S++ ++ L
Sbjct: 194 RSKDVKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEAL 241
>Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176186 | 20130731
Length = 309
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 85/200 (42%), Gaps = 19/200 (9%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 67
L+IG + +E L + F + G++ +++++ +G + G+GF F + AE+V+
Sbjct: 99 LWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQNY 158
Query: 68 HVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKNY 127
A +P DQ IFVG L + +T+S
Sbjct: 159 ---------AGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHET 209
Query: 128 F-DQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNG-----KMVEVK 181
F + ++ V+YD NT R +G+GF+ F G E + ++NG + + +
Sbjct: 210 FSSSYPSVKAAKVVYDANTGRSKGYGFVRF----GDESERSQAMTQMNGVYCSSRPMRIG 265
Query: 182 RAVPKELSPSPSRGQLGGYS 201
A P++ S GQ G S
Sbjct: 266 AATPRKSSGHQPGGQSNGTS 285
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 11/179 (6%)
Query: 2 EMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADP-SVA 60
E D +F + E + ++F G V + ++ DR + R++G G++ F D SV
Sbjct: 211 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVP 270
Query: 61 ERVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXX--XRTKKIFVGGLPST 118
+ + ++ G+ V K P + + +K++VG L
Sbjct: 271 MAIALSGQLLLGQPVMVK---PSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFN 327
Query: 119 ITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKM 177
+TES + F+ FGT+ V + D T +GFGFI F E K LNGK+
Sbjct: 328 MTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA-----KAAQSLNGKL 381
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 11/179 (6%)
Query: 2 EMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADP-SVA 60
E D +F + E + ++F G V + ++ DR + R++G G++ F D SV
Sbjct: 211 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVP 270
Query: 61 ERVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXX--XRTKKIFVGGLPST 118
+ + ++ G+ V K P + + +K++VG L
Sbjct: 271 MAIALSGQLLLGQPVMVK---PSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFN 327
Query: 119 ITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKM 177
+TES + F+ FGT+ V + D T +GFGFI F E K LNGK+
Sbjct: 328 MTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA-----KAAQSLNGKL 381
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 11/179 (6%)
Query: 2 EMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADP-SVA 60
E D +F + E + ++F G V + ++ DR + R++G G++ F D SV
Sbjct: 211 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVP 270
Query: 61 ERVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXX--XRTKKIFVGGLPST 118
+ + ++ G+ V K P + + +K++VG L
Sbjct: 271 MAIALSGQLLLGQPVMVK---PSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFN 327
Query: 119 ITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKM 177
+TES + F+ FGT+ V + D T +GFGFI F E K LNGK+
Sbjct: 328 MTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA-----KAAQSLNGKL 381
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 12/161 (7%)
Query: 6 GKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVM 65
G +F+ ++ + L FQ +G+++ + I + G+++GFG++ F D + V +
Sbjct: 103 GNVFVKNLAASIDNVGLHDLFQKYGNILSSKIARSED-GKSKGFGYIQF-DSEESANVAI 160
Query: 66 EKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 125
+K ++G TV RD Q + ++V L +TE
Sbjct: 161 QK--MNGSTV-------RDKQIYVGKFIRKSERSLPDLDAKFTNLYVKNLDPVVTEKHLG 211
Query: 126 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 166
F FG I + + D N Q +GFGF+ +DS + + +
Sbjct: 212 EKFSSFGKIVSLAIKKDENGQ-SKGFGFVNYDSPDDARRAM 251
>Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 29/157 (18%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
++F+GG+ D E+ LR+ F G V E +M + T + +GF F+ F + A+R V E
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 67 --KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
VI+G+ P D + +++G + T T+
Sbjct: 275 LKNPVINGKQC---GVTPSQDSDT---------------------LYLGNICKTWTKEAL 310
Query: 125 KNYFDQFGT--ITDVVVMYDHNTQ-RPRGFGFITFDS 158
K +G + D+ ++ D N + RGF F+ F S
Sbjct: 311 KEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSS 347
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
++FVGGL TE D + F + G +T+V +M + T++ +GF F+ F++ E ++ + +
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 169 TFHE-LNGKMVEV 180
+ +NGK V
Sbjct: 275 LKNPVINGKQCGV 287
>Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 29/157 (18%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
++F+GG+ D E+ LR+ F G V E +M + T + +GF F+ F + A+R V E
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 67 --KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
VI+G+ P D + +++G + T T+
Sbjct: 275 LKNPVINGKQC---GVTPSQDSDT---------------------LYLGNICKTWTKEAL 310
Query: 125 KNYFDQFGT--ITDVVVMYDHNTQ-RPRGFGFITFDS 158
K +G + D+ ++ D N + RGF F+ F S
Sbjct: 311 KEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSS 347
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
++FVGGL TE D + F + G +T+V +M + T++ +GF F+ F++ E ++ + +
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 169 TFHE-LNGKMVEV 180
+ +NGK V
Sbjct: 275 LKNPVINGKQCGV 287
>Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 29/157 (18%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
++F+GG+ D E+ LR+ F G V E +M + T + +GF F+ F + A+R V E
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 67 --KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
VI+G+ P D + +++G + T T+
Sbjct: 276 LKNPVINGKQC---GVTPSQDSDT---------------------LYLGNICKTWTKEAL 311
Query: 125 KNYFDQFGT--ITDVVVMYDHNTQ-RPRGFGFITFDS 158
K +G + D+ ++ D N + RGF F+ F S
Sbjct: 312 KEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSS 348
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
++FVGGL TE D + F + G +T+V +M + T++ +GF F+ F++ E ++ + +
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 169 TFHE-LNGKMVEV 180
+ +NGK V
Sbjct: 276 LKNPVINGKQCGV 288
>Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 29/157 (18%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
++F+GG+ D E+ LR+ F G V E +M + T + +GF F+ F + A+R V E
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 67 --KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 124
VI+G+ P D + +++G + T T+
Sbjct: 276 LKNPVINGKQC---GVTPSQDSDT---------------------LYLGNICKTWTKEAL 311
Query: 125 KNYFDQFGT--ITDVVVMYDHNTQ-RPRGFGFITFDS 158
K +G + D+ ++ D N + RGF F+ F S
Sbjct: 312 KEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSS 348
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
++FVGGL TE D + F + G +T+V +M + T++ +GF F+ F++ E ++ + +
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 169 TFHE-LNGKMVEV 180
+ +NGK V
Sbjct: 276 LKNPVINGKQCGV 288
>Medtr7g094670.1 | mRNA capping enzyme, putative | LC |
chr7:37775862-37750453 | 20130731
Length = 1678
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 4 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 63
+P +LF+ + + T EE L ++F FG V + ++ D+ T R++G F+ F+ P A R
Sbjct: 897 EPCRLFVRNLPYSTTEEELEEHFSQFGSVSQVHLVVDKDTKRSKGRAFIHFSVPEFAARA 956
Query: 64 VME--KHVIDGRTVEAKKAVPRDDQN 87
+ E + GR + A+P N
Sbjct: 957 LEESDNSIFQGRLLHVIAAIPIHSNN 982
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 168
++FV LP + TE + + +F QFG+++ V ++ D +T+R +G FI F E + L +
Sbjct: 900 RLFVRNLPYSTTEEELEEHFSQFGSVSQVHLVVDKDTKRSKGRAFIHFSVPEFAARALEE 959
Query: 169 TFHEL-NGKMVEVKRAVPKELSPSPSRGQLGGYSYAMSRV----GSFANGFTQGYN 219
+ + + G+++ V A+P + ++ Q G + RV + A G T+ +N
Sbjct: 960 SDNSIFQGRLLHVIAAIPIHSNNEENKNQ-GSKTLKQRRVEERKAAEAKGDTRAWN 1014
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 6/179 (3%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
KL++G I + + L + Q G V +A +M D+ + R+R F FV A E
Sbjct: 61 KLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDAN-AAAE 119
Query: 67 KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKN 126
K ++G + ++ + K++VG L +T K
Sbjct: 120 K--LNGTEIGGREIKVNITEKPLTTEGLPVQAGESTFVDSPYKVYVGNLAKNVTSDSLKK 177
Query: 127 YFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHE--LNGKMVEVKRA 183
+F + G V T + GFGF+TF S+E VE + +F+ L G+ + V +A
Sbjct: 178 FFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAI-SSFNNALLEGQKIRVNKA 235
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 77/176 (43%), Gaps = 14/176 (7%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 67
+++ +S ++ L+ F +G + AV+M+D G+++ FGFV F A+
Sbjct: 205 VYVKNLSESVTDDDLKNTFGEYGTITSAVVMRD-VDGKSKCFGFVNF---ENADAAAEAV 260
Query: 68 HVIDGRTVEAK-----KAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 122
++G+ + K KA+ + ++ +++ L ++T+
Sbjct: 261 EALNGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTDE 320
Query: 123 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 178
F +FGT+T ++ D RG GF+ F + E + L E+NGKMV
Sbjct: 321 KLSELFSEFGTVTSCKILRDPQGIS-RGSGFVAFSTPEEATRAL----AEMNGKMV 371
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--M 65
+FI + + + L F FG+++ I D +G ++G+GFV F + A+ + +
Sbjct: 114 IFIKNLDRAIDHKALYDTFSIFGNILSCKIAMD-ASGLSKGYGFVQFENEESAQSAIDKL 172
Query: 66 EKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 125
+++ + V + D++ + ++V L ++T+ D K
Sbjct: 173 NGMLLNDKPVYVGHFQRKQDRDNALSNA------------KFNNVYVKNLSESVTDDDLK 220
Query: 126 NYFDQFGTITDVVVMYDHNTQRPRGFGFITF 156
N F ++GTIT VVM D + + + FGF+ F
Sbjct: 221 NTFGEYGTITSAVVMRDVDG-KSKCFGFVNF 250
>Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 169
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 38/62 (61%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 66
+L++ G+S+ T EE LR F+NFG +V+ ++ D+ R RGF F+ +A +++ +
Sbjct: 96 RLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIEG 155
Query: 67 KH 68
H
Sbjct: 156 MH 157
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 109 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 166
+++V GL TE +N F FG + DV ++ D RPRGF F+ + +EE +K +
Sbjct: 96 RLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAI 153
>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
putative | HC | chr1:41816599-41813158 | 20130731
Length = 284
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 106 RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKV 165
+TKK+FV GL +E + F+ FG + +V V+ D ++R +G+ FI + +EE
Sbjct: 190 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAA 249
Query: 166 LYKTFHELNGKMV 178
L E+NGK++
Sbjct: 250 L----KEMNGKII 258
>Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:24877263-24880115 | 20130731
Length = 340
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 110 IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDS-EEGVEKVLYK 168
++V GL IT+ + + +F G + DV ++ D T+ RGFGF+T D+ EE V Y
Sbjct: 47 LYVTGLSPRITKRELEKHFSAKGKVVDVHLVVDPWTRESRGFGFVTMDTLEEADRCVKYL 106
Query: 169 TFHELNGKMVEVKRA 183
L G+++ V++A
Sbjct: 107 NRSVLEGRVITVEKA 121
>Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:52075123-52071412 | 20130731
Length = 490
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 6/85 (7%)
Query: 2 EMDPG--KLFIGGISWDTNEERLRQYFQNFGDVVEAVIM-KDRTTGRARGFGFVVFAD-P 57
EM G ++++G +SW+ EE LR++F N V+A+ + D+ TG RG+ V F D
Sbjct: 306 EMKEGYNRIYVGSLSWEITEEELRKFFSNCN--VKAIRLGMDKETGEFRGYAHVDFGDSQ 363
Query: 58 SVAERVVMEKHVIDGRTVEAKKAVP 82
S+ + +++ V+ GR V AVP
Sbjct: 364 SLKTALALDQSVLFGRPVRISCAVP 388
>Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr3:9308768-9310458 | 20130731
Length = 137
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 38/56 (67%)
Query: 7 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 62
K+F+ G+++ T EE+L + F +G+VV+A I+ ++ R +GFG+V FA+ A +
Sbjct: 33 KIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARK 88
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 76/173 (43%), Gaps = 25/173 (14%)
Query: 8 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER--VVM 65
+++G I +E L++ F + G + +++ + +GFV + D S A V +
Sbjct: 48 VYVGNIHPQVSEPLLQELFSSAGALEGCKLIRKEKSS----YGFVDYFDRSSAAIAIVTL 103
Query: 66 EKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 125
I G++++ A R + IFVG L +T++
Sbjct: 104 NGRNIFGQSIKVNWAYTRGQREDTSGHF---------------HIFVGDLSPEVTDATLY 148
Query: 126 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 178
F + + +D VM+D T R RGFGF++F +++ + + ++L GK +
Sbjct: 149 ACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAI----NDLTGKWL 197