Miyakogusa Predicted Gene
- Lj0g3v0235829.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0235829.1 tr|Q8LNY6|Q8LNY6_WHEAT G protein beta subunit
OS=Triticum aestivum GN=TaGB1 PE=1 SV=1,26.79,0.002,WD40,WD40 repeat;
GUANINE NUCLEOTIDE-BINDING PROTEIN BETA, PLANT (G PROTEIN BETA),NULL;
GUANINE NUCL,gene.g18439.t1.1
(198 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g116500.2 | guanine nucleotide-binding protein beta subuni... 253 6e-68
Medtr3g116500.1 | guanine nucleotide-binding protein beta subuni... 253 6e-68
Medtr3g116500.3 | guanine nucleotide-binding protein beta subuni... 253 6e-68
Medtr3g116500.5 | guanine nucleotide-binding protein beta subuni... 252 2e-67
Medtr3g116500.4 | guanine nucleotide-binding protein beta subuni... 252 2e-67
Medtr4g119620.1 | transducin/WD40 repeat protein | HC | chr4:495... 65 3e-11
Medtr2g012630.1 | katanin p80 WD40 repeat subunit B1-like protei... 65 5e-11
Medtr2g012630.2 | katanin p80 WD40 repeat subunit B1-like protei... 65 5e-11
Medtr1g072140.1 | transducin/WD40 repeat protein | HC | chr1:320... 63 2e-10
Medtr6g004040.1 | katanin p80 WD40 repeat subunit B1-like protei... 61 7e-10
Medtr3g106080.1 | TBP-associated factor 5 | HC | chr3:48932864-4... 58 5e-09
Medtr7g086360.1 | U5 small nuclear ribonucleoprotein 40 kDa-like... 55 3e-08
Medtr8g038550.1 | flowering time control FY-like protein | HC | ... 54 1e-07
Medtr5g022690.1 | U4/U6 small nuclear ribonucleoprotein PRP4 | H... 53 2e-07
Medtr2g016690.1 | transducin/WD-like repeat-protein | HC | chr2:... 52 2e-07
Medtr1g097140.1 | vegetative incompatibility HET-E-like protein ... 52 3e-07
Medtr2g102277.4 | coatomer subunit beta-like protein | HC | chr2... 50 1e-06
Medtr2g102277.2 | coatomer subunit beta-like protein | HC | chr2... 50 1e-06
Medtr2g102277.3 | coatomer subunit beta-like protein | HC | chr2... 50 1e-06
Medtr2g102277.1 | coatomer subunit beta-like protein | HC | chr2... 50 1e-06
Medtr4g102520.1 | Pre-mRNA splicing factor | HC | chr4:42494871-... 49 2e-06
Medtr3g045130.1 | U4/U6 small nuclear ribonucleoprotein PRP4 | H... 49 3e-06
Medtr3g045130.2 | U4/U6 small nuclear ribonucleoprotein PRP4 | H... 49 3e-06
Medtr5g016370.1 | transducin family protein/WD-40 repeat protein... 49 3e-06
Medtr4g011950.1 | coatomer subunit beta-like protein | HC | chr4... 49 3e-06
Medtr2g019400.1 | PP1/PP2A phosphatase pleiotropic regulator PRL... 49 4e-06
Medtr3g052220.1 | transducin/WD-like repeat-protein | HC | chr3:... 47 8e-06
>Medtr3g116500.2 | guanine nucleotide-binding protein beta
subunit-like protein | HC | chr3:54501019-54496204 |
20130731
Length = 378
Score = 253 bits (647), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 137/199 (68%), Positives = 146/199 (73%), Gaps = 40/199 (20%)
Query: 1 MFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
MFVSGSCD TARLWDTRVASRAV+TFHGHEGDVN+VKFFPDGNRFGTGS+DGTCRLFDIR
Sbjct: 219 MFVSGSCDATARLWDTRVASRAVRTFHGHEGDVNSVKFFPDGNRFGTGSEDGTCRLFDIR 278
Query: 61 TGHQLQVYYQQHS-DNEIPHVTSMAFSISGRLLFAGYTNGACYVWDTLLAKVVLNLGSLQ 119
TGHQLQVY QQHS DNE+ HVTS+AFSISGRLL AGYTNG CYVWDTLLAKVVLNLGSLQ
Sbjct: 279 TGHQLQVYNQQHSGDNEMAHVTSIAFSISGRLLIAGYTNGDCYVWDTLLAKVVLNLGSLQ 338
Query: 120 NSHDGRISCLGSVKFFGEQDHVLVLESQFSSSPMLTILTTKNLLSWDILALALVNHCIFI 179
NSH+GRI+CLG L + S+ L T SWD
Sbjct: 339 NSHEGRITCLG-------------LSADGSA------LCTG---SWDT------------ 364
Query: 180 STVFRNSNIWAFGGHRKVI 198
N IWAFGGHRKVI
Sbjct: 365 -----NLKIWAFGGHRKVI 378
>Medtr3g116500.1 | guanine nucleotide-binding protein beta
subunit-like protein | HC | chr3:54501139-54496286 |
20130731
Length = 378
Score = 253 bits (647), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 137/199 (68%), Positives = 146/199 (73%), Gaps = 40/199 (20%)
Query: 1 MFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
MFVSGSCD TARLWDTRVASRAV+TFHGHEGDVN+VKFFPDGNRFGTGS+DGTCRLFDIR
Sbjct: 219 MFVSGSCDATARLWDTRVASRAVRTFHGHEGDVNSVKFFPDGNRFGTGSEDGTCRLFDIR 278
Query: 61 TGHQLQVYYQQHS-DNEIPHVTSMAFSISGRLLFAGYTNGACYVWDTLLAKVVLNLGSLQ 119
TGHQLQVY QQHS DNE+ HVTS+AFSISGRLL AGYTNG CYVWDTLLAKVVLNLGSLQ
Sbjct: 279 TGHQLQVYNQQHSGDNEMAHVTSIAFSISGRLLIAGYTNGDCYVWDTLLAKVVLNLGSLQ 338
Query: 120 NSHDGRISCLGSVKFFGEQDHVLVLESQFSSSPMLTILTTKNLLSWDILALALVNHCIFI 179
NSH+GRI+CLG L + S+ L T SWD
Sbjct: 339 NSHEGRITCLG-------------LSADGSA------LCTG---SWDT------------ 364
Query: 180 STVFRNSNIWAFGGHRKVI 198
N IWAFGGHRKVI
Sbjct: 365 -----NLKIWAFGGHRKVI 378
>Medtr3g116500.3 | guanine nucleotide-binding protein beta
subunit-like protein | HC | chr3:54501139-54496286 |
20130731
Length = 378
Score = 253 bits (647), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 137/199 (68%), Positives = 146/199 (73%), Gaps = 40/199 (20%)
Query: 1 MFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
MFVSGSCD TARLWDTRVASRAV+TFHGHEGDVN+VKFFPDGNRFGTGS+DGTCRLFDIR
Sbjct: 219 MFVSGSCDATARLWDTRVASRAVRTFHGHEGDVNSVKFFPDGNRFGTGSEDGTCRLFDIR 278
Query: 61 TGHQLQVYYQQHS-DNEIPHVTSMAFSISGRLLFAGYTNGACYVWDTLLAKVVLNLGSLQ 119
TGHQLQVY QQHS DNE+ HVTS+AFSISGRLL AGYTNG CYVWDTLLAKVVLNLGSLQ
Sbjct: 279 TGHQLQVYNQQHSGDNEMAHVTSIAFSISGRLLIAGYTNGDCYVWDTLLAKVVLNLGSLQ 338
Query: 120 NSHDGRISCLGSVKFFGEQDHVLVLESQFSSSPMLTILTTKNLLSWDILALALVNHCIFI 179
NSH+GRI+CLG L + S+ L T SWD
Sbjct: 339 NSHEGRITCLG-------------LSADGSA------LCTG---SWDT------------ 364
Query: 180 STVFRNSNIWAFGGHRKVI 198
N IWAFGGHRKVI
Sbjct: 365 -----NLKIWAFGGHRKVI 378
>Medtr3g116500.5 | guanine nucleotide-binding protein beta
subunit-like protein | HC | chr3:54501139-54496286 |
20130731
Length = 268
Score = 252 bits (643), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 137/199 (68%), Positives = 146/199 (73%), Gaps = 40/199 (20%)
Query: 1 MFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
MFVSGSCD TARLWDTRVASRAV+TFHGHEGDVN+VKFFPDGNRFGTGS+DGTCRLFDIR
Sbjct: 109 MFVSGSCDATARLWDTRVASRAVRTFHGHEGDVNSVKFFPDGNRFGTGSEDGTCRLFDIR 168
Query: 61 TGHQLQVYYQQHS-DNEIPHVTSMAFSISGRLLFAGYTNGACYVWDTLLAKVVLNLGSLQ 119
TGHQLQVY QQHS DNE+ HVTS+AFSISGRLL AGYTNG CYVWDTLLAKVVLNLGSLQ
Sbjct: 169 TGHQLQVYNQQHSGDNEMAHVTSIAFSISGRLLIAGYTNGDCYVWDTLLAKVVLNLGSLQ 228
Query: 120 NSHDGRISCLGSVKFFGEQDHVLVLESQFSSSPMLTILTTKNLLSWDILALALVNHCIFI 179
NSH+GRI+CLG L + S+ L T SWD
Sbjct: 229 NSHEGRITCLG-------------LSADGSA------LCTG---SWDT------------ 254
Query: 180 STVFRNSNIWAFGGHRKVI 198
N IWAFGGHRKVI
Sbjct: 255 -----NLKIWAFGGHRKVI 268
>Medtr3g116500.4 | guanine nucleotide-binding protein beta
subunit-like protein | HC | chr3:54501139-54496286 |
20130731
Length = 268
Score = 252 bits (643), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 137/199 (68%), Positives = 146/199 (73%), Gaps = 40/199 (20%)
Query: 1 MFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
MFVSGSCD TARLWDTRVASRAV+TFHGHEGDVN+VKFFPDGNRFGTGS+DGTCRLFDIR
Sbjct: 109 MFVSGSCDATARLWDTRVASRAVRTFHGHEGDVNSVKFFPDGNRFGTGSEDGTCRLFDIR 168
Query: 61 TGHQLQVYYQQHS-DNEIPHVTSMAFSISGRLLFAGYTNGACYVWDTLLAKVVLNLGSLQ 119
TGHQLQVY QQHS DNE+ HVTS+AFSISGRLL AGYTNG CYVWDTLLAKVVLNLGSLQ
Sbjct: 169 TGHQLQVYNQQHSGDNEMAHVTSIAFSISGRLLIAGYTNGDCYVWDTLLAKVVLNLGSLQ 228
Query: 120 NSHDGRISCLGSVKFFGEQDHVLVLESQFSSSPMLTILTTKNLLSWDILALALVNHCIFI 179
NSH+GRI+CLG L + S+ L T SWD
Sbjct: 229 NSHEGRITCLG-------------LSADGSA------LCTG---SWDT------------ 254
Query: 180 STVFRNSNIWAFGGHRKVI 198
N IWAFGGHRKVI
Sbjct: 255 -----NLKIWAFGGHRKVI 268
>Medtr4g119620.1 | transducin/WD40 repeat protein | HC |
chr4:49575751-49578750 | 20130731
Length = 326
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
VS S D T RLWD S V+T HGH V V F P N +GS D T R++D+++
Sbjct: 93 LVSASDDKTIRLWDVPTGS-LVKTLHGHTNYVFCVNFNPQSNVIVSGSFDETVRVWDVKS 151
Query: 62 GHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWDTLLAKVVLNLGSLQNS 121
G L+V HSD VT++ F+ G L+ + +G C +WD + L +N
Sbjct: 152 GKCLKV-LPAHSD----PVTAVDFNRDGTLIVSSSYDGLCRIWDASTGHCIKTLIDDENP 206
Query: 122 HDGRISCLGSVKFF 135
+ + KF
Sbjct: 207 PVSYVKFSPNAKFI 220
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 1 MFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
+ VSGS D T R+WD + + + ++ H V V F DG + S DG CR++D
Sbjct: 134 VIVSGSFDETVRVWDVK-SGKCLKVLPAHSDPVTAVDFNRDGTLIVSSSYDGLCRIWDAS 192
Query: 61 TGHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWD 105
TGH ++ D+E P V+ + FS + + + G + +W+
Sbjct: 193 TGHCIKTLI----DDENPPVSYVKFSPNAKFILVGTLDNNLRLWN 233
>Medtr2g012630.1 | katanin p80 WD40 repeat subunit B1-like protein |
HC | chr2:3190941-3179834 | 20130731
Length = 1111
Score = 64.7 bits (156), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 10/129 (7%)
Query: 1 MFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
+ ++GS G RLWD S+ V+T GH + +V+F P G F +GS D +++D R
Sbjct: 72 LVLAGSTSGVIRLWDLE-ESKMVRTVAGHRSNCTSVEFHPFGEFFASGSMDTNLKIWDNR 130
Query: 61 TGHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWDTLLAKVVLNLGSLQN 120
+ Y+ HS ++++ F+ GR + +G + VWD K++ + N
Sbjct: 131 KKGCIHT-YKGHSQG----ISTIKFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF----N 181
Query: 121 SHDGRISCL 129
HDG I+ L
Sbjct: 182 FHDGHITSL 190
Score = 55.5 bits (132), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 43/167 (25%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
F SGS D ++WD R + T+ GH ++T+KF PDG +G D +++D+
Sbjct: 115 FASGSMDTNLKIWDNR-KKGCIHTYKGHSQGISTIKFTPDGRWVVSGGFDNVVKVWDLTA 173
Query: 62 G------------------HQLQVYYQQHSDN-------------------EIPHVTSMA 84
G H L+ S + E V SMA
Sbjct: 174 GKLLHDFNFHDGHITSLDFHPLEFLLATGSADRTVKFWDLESFELIGSARREATGVRSMA 233
Query: 85 FSISGRLLFAGYTNG-ACYVWDTLLAKVVLNLGSLQNS----HDGRI 126
F GR LF+G+ +G + W+ ++ +++G + HDG++
Sbjct: 234 FHPDGRTLFSGHEDGLKVFSWEPVICHDTVDMGWTKLGDLCIHDGKL 280
>Medtr2g012630.2 | katanin p80 WD40 repeat subunit B1-like protein |
HC | chr2:3190921-3179833 | 20130731
Length = 1030
Score = 64.7 bits (156), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 10/129 (7%)
Query: 1 MFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
+ ++GS G RLWD S+ V+T GH + +V+F P G F +GS D +++D R
Sbjct: 72 LVLAGSTSGVIRLWDLE-ESKMVRTVAGHRSNCTSVEFHPFGEFFASGSMDTNLKIWDNR 130
Query: 61 TGHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWDTLLAKVVLNLGSLQN 120
+ Y+ HS ++++ F+ GR + +G + VWD K++ + N
Sbjct: 131 KKGCIHT-YKGHSQG----ISTIKFTPDGRWVVSGGFDNVVKVWDLTAGKLLHDF----N 181
Query: 121 SHDGRISCL 129
HDG I+ L
Sbjct: 182 FHDGHITSL 190
Score = 55.5 bits (132), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 43/167 (25%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
F SGS D ++WD R + T+ GH ++T+KF PDG +G D +++D+
Sbjct: 115 FASGSMDTNLKIWDNR-KKGCIHTYKGHSQGISTIKFTPDGRWVVSGGFDNVVKVWDLTA 173
Query: 62 G------------------HQLQVYYQQHSDN-------------------EIPHVTSMA 84
G H L+ S + E V SMA
Sbjct: 174 GKLLHDFNFHDGHITSLDFHPLEFLLATGSADRTVKFWDLESFELIGSARREATGVRSMA 233
Query: 85 FSISGRLLFAGYTNG-ACYVWDTLLAKVVLNLGSLQNS----HDGRI 126
F GR LF+G+ +G + W+ ++ +++G + HDG++
Sbjct: 234 FHPDGRTLFSGHEDGLKVFSWEPVICHDTVDMGWTKLGDLCIHDGKL 280
>Medtr1g072140.1 | transducin/WD40 repeat protein | HC |
chr1:32005480-32003360 | 20130731
Length = 316
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 14/141 (9%)
Query: 4 SGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 63
S S D T R+WD V+T GH +V V F P N +GS D T R+++++TG
Sbjct: 86 SASDDKTLRIWDANTGD-CVKTLRGHGHNVFCVNFNPQSNYIVSGSFDETVRVWEVKTGK 144
Query: 64 QLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWDTLLAKVVLNLGSLQNSH- 122
+ V + H+ +P VTS+ F+ G L+ +G +G+C +WDT N G+L +
Sbjct: 145 SVHV-IKAHA---MP-VTSVDFNRDGSLIVSGSHDGSCKIWDT-------NSGALLKTLI 192
Query: 123 DGRISCLGSVKFFGEQDHVLV 143
D ++ + KF +LV
Sbjct: 193 DDKVPAVSFAKFSPNGKFILV 213
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 9/130 (6%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
VSGS D T R+W+ + ++V H V +V F DG+ +GS DG+C+++D +
Sbjct: 126 IVSGSFDETVRVWEVKTG-KSVHVIKAHAMPVTSVDFNRDGSLIVSGSHDGSCKIWDTNS 184
Query: 62 GHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWDTLLAKVVLNLGSLQNS 121
G L+ D+++P V+ FS +G+ + N +W+ + + + +
Sbjct: 185 GALLKTLI----DDKVPAVSFAKFSPNGKFILVATLNDTLKLWNYAAGRSL----KMYSG 236
Query: 122 HDGRISCLGS 131
H R+ CL S
Sbjct: 237 HVNRVYCLTS 246
>Medtr6g004040.1 | katanin p80 WD40 repeat subunit B1-like protein |
HC | chr6:91770-77124 | 20130731
Length = 760
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 10/129 (7%)
Query: 1 MFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
+ +G+ GT +LWD A + V+T GH + +V F P G F +GS D +++DIR
Sbjct: 73 LVAAGAASGTIKLWDLEEA-KIVRTLTGHRSNCTSVDFHPFGEFFASGSLDTNLKIWDIR 131
Query: 61 TGHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWDTLLAKVVLNLGSLQN 120
+ Y+ H+ V ++ F+ GR + +G + +WD K++ +
Sbjct: 132 KKGCIHT-YKGHTRG----VNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDF----K 182
Query: 121 SHDGRISCL 129
SH+G+I C+
Sbjct: 183 SHEGQIQCI 191
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 16/144 (11%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
F SGS D ++WD R + T+ GH VN ++F PDG +G +D T +L+D+
Sbjct: 116 FASGSLDTNLKIWDIRKKG-CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTA 174
Query: 62 GHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWDTLLAKVVLNLG----- 116
G L + + + F S LL G + WD +++ + G
Sbjct: 175 GKLLHDFKSHEG-----QIQCIDFHPSEFLLATGSADRTVKFWDLETFELIGSAGPETTG 229
Query: 117 --SLQNSHDGRISCLG---SVKFF 135
SL S DGR G S+K F
Sbjct: 230 VRSLTFSPDGRTLLCGLHESLKVF 253
>Medtr3g106080.1 | TBP-associated factor 5 | HC |
chr3:48932864-48942802 | 20130731
Length = 669
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 15/137 (10%)
Query: 2 FVSGSCDGTARLWDT-RVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
F S S D TAR+W R+ + ++ GH DV+ V++ + N TGS D T RL+D++
Sbjct: 476 FASSSHDRTARVWSMDRI--QPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQ 533
Query: 61 TGHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWDTLLAKVVLNLGSLQN 120
+G ++V+ + S++ S GR + +G +G +WD + V L
Sbjct: 534 SGECVRVFVGHRG-----MILSLSMSPDGRYMASGDEDGTIMMWDLSSGRCVTPLV---- 584
Query: 121 SHDGRISCLGSVKFFGE 137
G SC+ S+ F E
Sbjct: 585 ---GHTSCVWSLAFSSE 598
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
+GS D T RLWD + + V+ F GH G + ++ PDG +G +DGT ++D+ +
Sbjct: 518 IATGSSDKTVRLWDVQ-SGECVRVFVGHRGMILSLSMSPDGRYMASGDEDGTIMMWDLSS 576
Query: 62 GHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWD 105
G + S V S+AFS G +L +G + +WD
Sbjct: 577 GRCVTPLVGHTS-----CVWSLAFSSEGSILASGSADCTVKLWD 615
>Medtr7g086360.1 | U5 small nuclear ribonucleoprotein 40 kDa-like
protein | HC | chr7:33509053-33512350 | 20130731
Length = 345
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 74/179 (41%), Gaps = 27/179 (15%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRF-GTGSDDGTCRLFDIR 60
+S S D T RLWDT + ++ H VN+ G +GSDDGT +L+D+R
Sbjct: 113 IISASPDKTLRLWDTETG-KQIKKMVEHLSYVNSCCPTRRGPPLVVSGSDDGTAKLWDMR 171
Query: 61 TGHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWDTLLAKVVLNLGSLQN 120
+Q + ++ +T+++FS + ++ G + +WD +V + L
Sbjct: 172 QRGSIQTFPDKY------QITAVSFSDASDKIYTGGIDNDVKIWDLRKGEVTMTLQ---- 221
Query: 121 SHDGRISCLGSVKFFGEQDHVLVLESQFSSSPMLTILTTKNLLSWDILALALVNHCIFI 179
G QD + ++ S +LT L WD+ A N C+ I
Sbjct: 222 ---------------GHQDMITSMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKI 265
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 1 MFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
+ VSGS DGTA+LWD R ++QTF + + V F ++ TG D +++D+R
Sbjct: 155 LVVSGSDDGTAKLWDMRQRG-SIQTF-PDKYQITAVSFSDASDKIYTGGIDNDVKIWDLR 212
Query: 61 TGHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWD 105
G ++ + Q H D +TSM S G L + +WD
Sbjct: 213 KG-EVTMTLQGHQD----MITSMQLSPDGSYLLTNGMDCKLCIWD 252
>Medtr8g038550.1 | flowering time control FY-like protein | HC |
chr8:14279771-14293184 | 20130731
Length = 745
Score = 53.5 bits (127), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 10/127 (7%)
Query: 1 MFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
+ VSG D +LWD + + + + +FHGH+ V VK+ +GN T S D +L+DIR
Sbjct: 323 LLVSGGKDNLVKLWDAK-SGKELSSFHGHKNTVLCVKWNQNGNWVLTASKDQIIKLYDIR 381
Query: 61 TGHQLQVYYQQHSDNEIPHVTSMAF-SISGRLLFAGYTNGACYVWDTLLAKVVLNLGSLQ 119
+L+ + D VT++A+ +G +G+ + W L+ + + +
Sbjct: 382 AMKELESFRGHRKD-----VTTLAWHPFHEEYFVSGSYDGSIFHW--LVGQDTPQI-EIS 433
Query: 120 NSHDGRI 126
N+HD +
Sbjct: 434 NAHDNNV 440
>Medtr5g022690.1 | U4/U6 small nuclear ribonucleoprotein PRP4 | HC |
chr5:8972619-8969829 | 20130731
Length = 488
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 23 VQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHSDNEIPHVTS 82
++TF GH + + F P G GT SDD T RL+D+ TG +L + + HS V S
Sbjct: 272 LRTFKGHSDRLARIAFHPSGKYLGTASDDKTWRLWDVETGEEL-LLQEGHS----REVYS 326
Query: 83 MAFSISGRLLFAGYTNGACYVWDTLLAKVVLNL 115
+AF G L + + VWD + +L L
Sbjct: 327 LAFHHDGSLAASCGKDALARVWDLRTKRSLLAL 359
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 3 VSGSC--DGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
++ SC D AR+WD R R++ GH + + F P+G TG +D TCR++D+R
Sbjct: 335 LAASCGKDALARVWDLRT-KRSLLALEGHVKPIRGISFSPNGYHLATGGEDNTCRIWDLR 393
Query: 61 TGHQL 65
L
Sbjct: 394 KNKSL 398
>Medtr2g016690.1 | transducin/WD-like repeat-protein | HC |
chr2:5155282-5150008 | 20130731
Length = 331
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 10/135 (7%)
Query: 4 SGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 63
SGS DGT ++WD R Q + VNTV P+ +G +G R++D+ T +
Sbjct: 110 SGSEDGTVKIWDLRAP--GCQREYESRAAVNTVVLHPNQTELISGDQNGNIRVWDL-TAN 166
Query: 64 QLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWDTLLA-KVVLNLGSLQN-- 120
D + +T M G L+ A NG CYVW L + + N L
Sbjct: 167 SCSCELVPEVDTAVRSLTVM---WDGSLVVAANNNGTCYVWRLLRGTQTMTNFEPLHKLQ 223
Query: 121 SHDGRI-SCLGSVKF 134
+H+G I C+ S +F
Sbjct: 224 AHNGYILKCVLSPEF 238
>Medtr1g097140.1 | vegetative incompatibility HET-E-like protein |
HC | chr1:43824050-43816450 | 20130731
Length = 407
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 23 VQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY--YQQHSDNEIPHV 80
+ +F+GH G V F PDG TGSDD T R+++ ++G + V + H++ +
Sbjct: 199 LMSFNGHAGSVTCGDFTPDGRTICTGSDDATLRIWNPKSGESIHVVRGHPYHTEG----I 254
Query: 81 TSMAFSISGRLLFAGYTNGACYVWDTLLAKVVLNLGSLQNSHDGRISCLG 130
T +A + + + G +G+ ++ + +VV L SH I C+G
Sbjct: 255 TCLAINSTSTIALTGSVDGSVHIVNITTGRVVSTL----PSHSSSIECVG 300
>Medtr2g102277.4 | coatomer subunit beta-like protein | HC |
chr2:44045802-44056312 | 20130731
Length = 917
Score = 50.4 bits (119), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
++GS D TA++WD + S VQT GH +V+ V F P+ TGS+DGT R++
Sbjct: 202 LITGSDDHTAKVWDYQTKS-CVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIW---- 256
Query: 62 GHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYV 103
H + + + V ++ + S R + GY G V
Sbjct: 257 -HSTTYRLENTLNYGLERVWAIGYLKSSRRVVIGYDEGTIMV 297
>Medtr2g102277.2 | coatomer subunit beta-like protein | HC |
chr2:44045802-44056791 | 20130731
Length = 921
Score = 50.4 bits (119), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
++GS D TA++WD + S VQT GH +V+ V F P+ TGS+DGT R++
Sbjct: 202 LITGSDDHTAKVWDYQTKS-CVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIW---- 256
Query: 62 GHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYV 103
H + + + V ++ + S R + GY G V
Sbjct: 257 -HSTTYRLENTLNYGLERVWAIGYLKSSRRVVIGYDEGTIMV 297
>Medtr2g102277.3 | coatomer subunit beta-like protein | HC |
chr2:44045802-44056785 | 20130731
Length = 921
Score = 50.4 bits (119), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
++GS D TA++WD + S VQT GH +V+ V F P+ TGS+DGT R++
Sbjct: 202 LITGSDDHTAKVWDYQTKS-CVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIW---- 256
Query: 62 GHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYV 103
H + + + V ++ + S R + GY G V
Sbjct: 257 -HSTTYRLENTLNYGLERVWAIGYLKSSRRVVIGYDEGTIMV 297
>Medtr2g102277.1 | coatomer subunit beta-like protein | HC |
chr2:44045802-44056791 | 20130731
Length = 917
Score = 50.4 bits (119), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
++GS D TA++WD + S VQT GH +V+ V F P+ TGS+DGT R++
Sbjct: 202 LITGSDDHTAKVWDYQTKS-CVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIW---- 256
Query: 62 GHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYV 103
H + + + V ++ + S R + GY G V
Sbjct: 257 -HSTTYRLENTLNYGLERVWAIGYLKSSRRVVIGYDEGTIMV 297
>Medtr4g102520.1 | Pre-mRNA splicing factor | HC |
chr4:42494871-42492105 | 20130731
Length = 600
Score = 49.3 bits (116), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 12/135 (8%)
Query: 1 MFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
+ +S D ++WD + ++T+ GH V + F DG +F + D + +D
Sbjct: 309 LILSAGMDTKVKIWDVFNTGKCMRTYMGHSKAVRDICFTNDGTKFLSAGYDKNIKYWDTE 368
Query: 61 TGHQLQVYYQQHSDNEIPHVTSMAFSISGR-LLFAGYTNGACYVWDTLLAKVVLNLGSLQ 119
TG + + S +IP+V + + +L AG ++ WD +N G +
Sbjct: 369 TGQVISTF----STGKIPYVVKLNPDEDKQNVLLAGMSDKKIVQWD-------MNTGQIT 417
Query: 120 NSHDGRISCLGSVKF 134
+D + + ++ F
Sbjct: 418 QEYDQHLGAVNTITF 432
>Medtr3g045130.1 | U4/U6 small nuclear ribonucleoprotein PRP4 | HC |
chr3:14589773-14591633 | 20130731
Length = 521
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 3 VSGSC--DGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
++ SC D AR+WD R R+V GH + + F P+G TG +D TCR++D+R
Sbjct: 412 LAASCGLDALARVWDLRTG-RSVLALEGHVKSILGISFSPNGYHLATGGEDNTCRIWDLR 470
Query: 61 TGHQL 65
L
Sbjct: 471 KKKSL 475
>Medtr3g045130.2 | U4/U6 small nuclear ribonucleoprotein PRP4 | HC |
chr3:14589773-14591633 | 20130731
Length = 521
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 3 VSGSC--DGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
++ SC D AR+WD R R+V GH + + F P+G TG +D TCR++D+R
Sbjct: 412 LAASCGLDALARVWDLRTG-RSVLALEGHVKSILGISFSPNGYHLATGGEDNTCRIWDLR 470
Query: 61 TGHQL 65
L
Sbjct: 471 KKKSL 475
>Medtr5g016370.1 | transducin family protein/WD-40 repeat protein |
HC | chr5:5874227-5866099 | 20130731
Length = 595
Score = 48.9 bits (115), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 1 MFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
+ S SCD T +LWD + + + + +GH V T+ F P+G +GS D + ++ +
Sbjct: 495 VLASASCDSTVKLWDAELG-KLIHSLNGHRDRVYTISFSPNGEYLASGSPDKSINIWSLN 553
Query: 61 TGHQLQVY 68
G ++ Y
Sbjct: 554 DGKIIKTY 561
>Medtr4g011950.1 | coatomer subunit beta-like protein | HC |
chr4:3146350-3132249 | 20130731
Length = 931
Score = 48.9 bits (115), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
++GS D TA++WD + S VQT GH +V+ V F P+ TGS+DGT R++
Sbjct: 202 LITGSDDHTAKVWDYQTKS-CVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIW---- 256
Query: 62 GHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYV 103
H + + + V ++ + R + GY G V
Sbjct: 257 -HSTTYRLENTLNYGLERVWAIGYMKGSRRVVIGYDEGTIMV 297
>Medtr2g019400.1 | PP1/PP2A phosphatase pleiotropic regulator PRL1 |
HC | chr2:6339677-6336997 | 20130731
Length = 274
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 20/139 (14%)
Query: 1 MFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
+ V+G + R+WD R + VQT GH+ ++++ P + T S D T +++D+R
Sbjct: 89 ILVTGGHNSVCRVWDIR-SEMPVQTLSGHDNAISSLFIRPTDSHVVTSSHDSTIKMWDLR 147
Query: 61 TGHQLQVY--YQQHSDNEIPHVT---------SMAFSISGRLLFAGYTNGACYVWD---- 105
G + ++Q +PH T +MA + G ++ G NG+ + WD
Sbjct: 148 YGKTMLALKNHKQSVRAMVPHPTESQQKTTVDAMAVNDKG-VMVTGGDNGSMWFWDWKSG 206
Query: 106 ---TLLAKVVLNLGSLQNS 121
++ ++ GS+ N
Sbjct: 207 HNFQQYSQTIVQPGSMDNE 225
>Medtr3g052220.1 | transducin/WD-like repeat-protein | HC |
chr3:20670443-20658166 | 20130731
Length = 513
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 1 MFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
M SGS DG ++W R A + H H V +V F DG++ + S D T R+ ++
Sbjct: 278 MIASGSTDGKIKVWRIRTAQCLRRLEHAHSQGVTSVSFSRDGSQLLSTSFDSTARIHGLK 337
Query: 61 TGHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWD 105
+G L+ + S +V F+ G + ++ VWD
Sbjct: 338 SGKMLKEFRGHTS-----YVNDATFTNDGTRVITASSDCTVKVWD 377