Miyakogusa Predicted Gene

Lj0g3v0235439.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0235439.1 Non Characterized Hit- tr|E0CRX4|E0CRX4_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,38.1,6e-19,seg,NULL,CUFF.15408.1
         (237 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g066450.2 | hydroxyproline-rich glycoprotein family protei...    81   1e-15
Medtr5g066450.1 | hydroxyproline-rich glycoprotein family protei...    81   1e-15

>Medtr5g066450.2 | hydroxyproline-rich glycoprotein family protein,
           putative | HC | chr5:28035374-28031526 | 20130731
          Length = 317

 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/45 (80%), Positives = 39/45 (86%)

Query: 1   MTPSPSQVFPAPYRNPVWNGPRGPAPYNFPFHPSGGGTYPNPRFE 45
           M+PSP+Q  P PYRNPVWNGPRGP  YNFPF PSGGGTYP+PRFE
Sbjct: 110 MSPSPTQALPTPYRNPVWNGPRGPPQYNFPFRPSGGGTYPSPRFE 154



 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 38/69 (55%)

Query: 104 RGRGRGSWQNTXXXXXXXXXXXXXXXXXHWSNEDQSIAPERYYKRSMIEDPWKFLQPVIW 163
           RGRGRG W N                   WSNED+   PER+YKRSM+EDPW  L+P+IW
Sbjct: 204 RGRGRGFWHNNRSHVSGRGSGQGSSSHGRWSNEDRGCGPERFYKRSMVEDPWISLKPIIW 263

Query: 164 KAVGISFNT 172
            +   S NT
Sbjct: 264 YSTISSSNT 272


>Medtr5g066450.1 | hydroxyproline-rich glycoprotein family protein,
           putative | HC | chr5:28035374-28031526 | 20130731
          Length = 317

 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/45 (80%), Positives = 39/45 (86%)

Query: 1   MTPSPSQVFPAPYRNPVWNGPRGPAPYNFPFHPSGGGTYPNPRFE 45
           M+PSP+Q  P PYRNPVWNGPRGP  YNFPF PSGGGTYP+PRFE
Sbjct: 110 MSPSPTQALPTPYRNPVWNGPRGPPQYNFPFRPSGGGTYPSPRFE 154



 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 38/69 (55%)

Query: 104 RGRGRGSWQNTXXXXXXXXXXXXXXXXXHWSNEDQSIAPERYYKRSMIEDPWKFLQPVIW 163
           RGRGRG W N                   WSNED+   PER+YKRSM+EDPW  L+P+IW
Sbjct: 204 RGRGRGFWHNNRSHVSGRGSGQGSSSHGRWSNEDRGCGPERFYKRSMVEDPWISLKPIIW 263

Query: 164 KAVGISFNT 172
            +   S NT
Sbjct: 264 YSTISSSNT 272