Miyakogusa Predicted Gene

Lj0g3v0235139.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0235139.1 Non Characterized Hit- tr|I1K1N8|I1K1N8_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.49428 PE,44.55,1e-18,
,CUFF.15380.1
         (129 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g074290.1 | mediator of RNA polymerase II transcription su...   172   6e-44
Medtr2g021400.1 | mediator of RNA polymerase II transcription su...    89   1e-18
Medtr2g105810.1 | mediator of RNA polymerase II transcription su...    80   5e-16
Medtr7g094550.1 | mediator of RNA polymerase II transcription su...    58   2e-09

>Medtr7g074290.1 | mediator of RNA polymerase II transcription
           subunit 33A | HC | chr7:27762202-27771907 | 20130731
          Length = 1320

 Score =  172 bits (436), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 88/131 (67%), Positives = 99/131 (75%), Gaps = 5/131 (3%)

Query: 1   MESSEWNNQVEEGVLRRAKQWQQRS-EPPSAWVTELVEYLTGNGVALPSPELAELLVSQM 59
           MES  WN  V E +  R KQ+QQRS E P+ WVTEL+EY    GV LPS EL ELLVSQM
Sbjct: 1   MES--WNETVTESITNRLKQFQQRSNESPTVWVTELIEYFNSVGVELPSSELVELLVSQM 58

Query: 60  CFE--KDHPSMWKFMSHALSSRLVFPLQILSLLSSKVIPRRRSHPHAYALFLPLLDQHVF 117
           C E  KDHPS WKF+ HALSS+L+FPLQ+LSLL+ KV   R SHPHAYALFLPLLDQH F
Sbjct: 59  CSENVKDHPSTWKFLHHALSSKLIFPLQLLSLLAYKVFRNRFSHPHAYALFLPLLDQHAF 118

Query: 118 SFQPTGSVSCN 128
           +FQP  SVSC+
Sbjct: 119 NFQPIASVSCS 129


>Medtr2g021400.1 | mediator of RNA polymerase II transcription
           subunit 33A | HC | chr2:7282174-7290385 | 20130731
          Length = 1319

 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/102 (41%), Positives = 65/102 (63%)

Query: 19  KQWQQRSEPPSAWVTELVEYLTGNGVALPSPELAELLVSQMCFEKDHPSMWKFMSHALSS 78
           K+ Q++   P AW  E+   L  +G ++PS ELAE LVS +C++ + P +WKF+  AL  
Sbjct: 14  KEAQEKGSDPLAWALEMYSNLNSSGKSVPSSELAEFLVSYICWDNNVPIIWKFLEKALIL 73

Query: 79  RLVFPLQILSLLSSKVIPRRRSHPHAYALFLPLLDQHVFSFQ 120
            +V P+ +L+LLS +VIP R + P AY L+L L+ +H F  +
Sbjct: 74  NIVPPMLLLALLSVRVIPCRHAQPAAYRLYLELVKKHTFELK 115


>Medtr2g105810.1 | mediator of RNA polymerase II transcription
           subunit 33A | HC | chr2:45673309-45664907 | 20130731
          Length = 1316

 Score = 80.1 bits (196), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 62/108 (57%), Gaps = 2/108 (1%)

Query: 14  VLRRAKQWQQRSEPPSAWVTELVEYLTGNGVALPSPELAELLVSQMCFEKDHPSMWKFMS 73
           V  R  +  +       W  E+  +L   GV LPS ELA  LVS +C++ +    WK++ 
Sbjct: 6   VWERVIEITKCGRSTEVWSIEVTSWLKTAGVLLPSVELAHRLVSHICWDNNVAVTWKYLE 65

Query: 74  HALSSRLVFPLQILSLLSSKVIPRRRS--HPHAYALFLPLLDQHVFSF 119
            A+ SR+V P  +L+LLS+KV+P R    HP AY+L+L LL+ H FS 
Sbjct: 66  KAMESRMVPPFLVLALLSTKVVPNRHPLLHPPAYSLYLHLLNTHAFSL 113


>Medtr7g094550.1 | mediator of RNA polymerase II transcription
           subunit 33A | HC | chr7:37640277-37651980 | 20130731
          Length = 1338

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 61/109 (55%)

Query: 12  EGVLRRAKQWQQRSEPPSAWVTELVEYLTGNGVALPSPELAELLVSQMCFEKDHPSMWKF 71
           + +L +       +  P+ W ++++  L    V LPS +LA  LVS + +    P  WK 
Sbjct: 19  DAILLQTNSALMNNTDPNVWASQIISTLRSTAVTLPSVDLAHRLVSHLFWNHHSPIAWKL 78

Query: 72  MSHALSSRLVFPLQILSLLSSKVIPRRRSHPHAYALFLPLLDQHVFSFQ 120
           +  A S  L+ PL +++LLS++++P R+ +P AY L+L L+ Q+V   Q
Sbjct: 79  LDIAASLNLLPPLLLVALLSTRIVPMRKVYPQAYRLYLELVKQYVLMLQ 127