Miyakogusa Predicted Gene

Lj0g3v0234959.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0234959.1 Non Characterized Hit- tr|I3SIC1|I3SIC1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,93.65,0,Nucleic
acid-binding proteins,Nucleic acid-binding, OB-fold-like; eIF2alpha
middle domain-like,Trans,
gene.Ljchr0_pseudomol_20120828.path1.gene24152.1
         (123 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g071550.1 | eukaryotic translation initiation factor 2 alp...   201   9e-53
Medtr3g071560.1 | eukaryotic translation initiation factor 2 alp...   201   2e-52
Medtr3g071540.1 | eukaryotic translation initiation factor 2 alp...   195   7e-51

>Medtr3g071550.1 | eukaryotic translation initiation factor 2 alpha
           | HC | chr3:32110879-32105937 | 20130731
          Length = 340

 Score =  201 bits (512), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 104/126 (82%), Positives = 106/126 (84%), Gaps = 3/126 (2%)

Query: 1   MYETKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGR 60
           MYE KYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSE             KVGR
Sbjct: 9   MYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGR 68

Query: 61  IEPVMVLRVDKEKGYIDLSKRRVSEEDIQTCEERYNKSKLVHSIMRHVAETLNIDLE--- 117
           IEPVMVLRVDKEKGYIDLSKRRVSEEDIQTCEERYNKSKLVHSIMRHVAETL++DLE   
Sbjct: 69  IEPVMVLRVDKEKGYIDLSKRRVSEEDIQTCEERYNKSKLVHSIMRHVAETLDLDLEDLY 128

Query: 118 VHTYIP 123
           VH   P
Sbjct: 129 VHIGWP 134


>Medtr3g071560.1 | eukaryotic translation initiation factor 2 alpha
           | HC | chr3:32118994-32114560 | 20130731
          Length = 340

 Score =  201 bits (510), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 103/126 (81%), Positives = 105/126 (83%), Gaps = 3/126 (2%)

Query: 1   MYETKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGR 60
           MYE +YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSE             KVGR
Sbjct: 9   MYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGR 68

Query: 61  IEPVMVLRVDKEKGYIDLSKRRVSEEDIQTCEERYNKSKLVHSIMRHVAETLNIDLE--- 117
           IEPVMVLRVDKEKGYIDLSKRRVSEEDIQ CEERYNKSKLVHSIMRHVAETLN+DLE   
Sbjct: 69  IEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLNLDLEDLY 128

Query: 118 VHTYIP 123
           VH   P
Sbjct: 129 VHIGWP 134


>Medtr3g071540.1 | eukaryotic translation initiation factor 2 alpha
           | HC | chr3:32104983-32100756 | 20130731
          Length = 338

 Score =  195 bits (496), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 100/126 (79%), Positives = 103/126 (81%), Gaps = 3/126 (2%)

Query: 1   MYETKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGR 60
           MYE +YPEVD AVMIQVKNIADMGAYVSLLEYNNIEGMILFSE             KVGR
Sbjct: 9   MYEARYPEVDTAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVNSLIKVGR 68

Query: 61  IEPVMVLRVDKEKGYIDLSKRRVSEEDIQTCEERYNKSKLVHSIMRHVAETLNIDLE--- 117
            EPVMVLRVDKEKGYIDLSKRRVSEEDIQ CEERYNKSKLVHSIMRHVAETL++DLE   
Sbjct: 69  TEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLDLDLEELY 128

Query: 118 VHTYIP 123
           VH   P
Sbjct: 129 VHIGWP 134