Miyakogusa Predicted Gene

Lj0g3v0233849.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0233849.1 Non Characterized Hit- tr|D8SV13|D8SV13_SELML
Putative uncharacterized protein OS=Selaginella
moelle,48.6,5e-19,seg,NULL; ATP-DEPENDENT TRANSPORTER (ABCF1)
PLANT,NULL; ATP-BINDING TRANSPORT PROTEIN-RELATED,NULL,CUFF.15302.1
         (132 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g080970.1 | ABC transporter F family-like protein | HC | c...   200   3e-52

>Medtr3g080970.1 | ABC transporter F family-like protein | HC |
           chr3:36645188-36654918 | 20130731
          Length = 713

 Score =  200 bits (508), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 99/132 (75%), Positives = 105/132 (79%)

Query: 1   MTEVARSVVHEVFGENIVDVDEPIVDYIVNVXXXXXXXXXXXXXXXXXXLGELLVAAGCV 60
           MTEVARSVVHEV G+ I DVDEPIV YIVNV                  LG+LLVAAGCV
Sbjct: 1   MTEVARSVVHEVIGDKITDVDEPIVSYIVNVLADEDFDFGLDGEGAFDALGDLLVAAGCV 60

Query: 61  PDFPDCRTACSKLSDKFGKHGLVKEKPTVRSLTTPFRMNEGLDDGVAPKKKPEPVDGPLL 120
           PDFP+CR+ CSKLSDKFGKHGLVK KPTVRSL  PFRMNEGLDDG APKKKPEPVDGPLL
Sbjct: 61  PDFPECRSVCSKLSDKFGKHGLVKAKPTVRSLAAPFRMNEGLDDGEAPKKKPEPVDGPLL 120

Query: 121 TERDKLKLERRK 132
           +ERDKLK+ERRK
Sbjct: 121 SERDKLKIERRK 132