Miyakogusa Predicted Gene

Lj0g3v0233579.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0233579.1 tr|G4HLS2|G4HLS2_9BACL Ribosome biogenesis GTPase
A OS=Paenibacillus lactis 154 GN=PaelaDRAFT_4933
P,42.2,6e-18,GTP-BINDING PROTEIN-RELATED,NULL; P-loop containing
nucleoside triphosphate hydrolases,NULL; no desc,CUFF.15273.1
         (134 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g091320.1 | P-loop nucleoside triphosphate hydrolase super...   175   1e-44
Medtr7g091320.3 | P-loop nucleoside triphosphate hydrolase super...   175   1e-44
Medtr7g091320.2 | P-loop nucleoside triphosphate hydrolase super...   174   2e-44
Medtr7g094890.1 | ribosome biogenesis GTPase A | HC | chr7:37900...    69   8e-13
Medtr2g061470.1 | P-loop nucleoside triphosphate hydrolase super...    67   6e-12

>Medtr7g091320.1 | P-loop nucleoside triphosphate hydrolase
           superfamily protein | HC | chr7:36058142-36064108 |
           20130731
          Length = 373

 Score =  175 bits (443), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/119 (69%), Positives = 93/119 (78%)

Query: 16  DMAFNTGGGAITWSPGHMPAATRAILSRLKLSDLVIEVRDARIPLSSANANLQPHLSSKR 75
           +M FNTGGG I W PGHM AATRAI +RLKL+DLVIEVRDARIP+SS N++LQPHLS KR
Sbjct: 14  EMDFNTGGGLINWFPGHMAAATRAIRNRLKLADLVIEVRDARIPISSINSDLQPHLSLKR 73

Query: 76  RVIALNKKDLANPNIMHKWTSYFDSCKQVCFPINAHSRSSXXXXXXXXXXXXXXXISKE 134
           RV+ALNKKDLANPNIMHKW +YF+SCKQ C PINAHS+SS               ISKE
Sbjct: 74  RVVALNKKDLANPNIMHKWVNYFESCKQDCIPINAHSKSSVTKLLELVELKLKEAISKE 132


>Medtr7g091320.3 | P-loop nucleoside triphosphate hydrolase
           superfamily protein | HC | chr7:36058214-36064108 |
           20130731
          Length = 373

 Score =  175 bits (443), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/119 (69%), Positives = 93/119 (78%)

Query: 16  DMAFNTGGGAITWSPGHMPAATRAILSRLKLSDLVIEVRDARIPLSSANANLQPHLSSKR 75
           +M FNTGGG I W PGHM AATRAI +RLKL+DLVIEVRDARIP+SS N++LQPHLS KR
Sbjct: 14  EMDFNTGGGLINWFPGHMAAATRAIRNRLKLADLVIEVRDARIPISSINSDLQPHLSLKR 73

Query: 76  RVIALNKKDLANPNIMHKWTSYFDSCKQVCFPINAHSRSSXXXXXXXXXXXXXXXISKE 134
           RV+ALNKKDLANPNIMHKW +YF+SCKQ C PINAHS+SS               ISKE
Sbjct: 74  RVVALNKKDLANPNIMHKWVNYFESCKQDCIPINAHSKSSVTKLLELVELKLKEAISKE 132


>Medtr7g091320.2 | P-loop nucleoside triphosphate hydrolase
           superfamily protein | HC | chr7:36058204-36063524 |
           20130731
          Length = 299

 Score =  174 bits (442), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/119 (69%), Positives = 93/119 (78%)

Query: 16  DMAFNTGGGAITWSPGHMPAATRAILSRLKLSDLVIEVRDARIPLSSANANLQPHLSSKR 75
           +M FNTGGG I W PGHM AATRAI +RLKL+DLVIEVRDARIP+SS N++LQPHLS KR
Sbjct: 14  EMDFNTGGGLINWFPGHMAAATRAIRNRLKLADLVIEVRDARIPISSINSDLQPHLSLKR 73

Query: 76  RVIALNKKDLANPNIMHKWTSYFDSCKQVCFPINAHSRSSXXXXXXXXXXXXXXXISKE 134
           RV+ALNKKDLANPNIMHKW +YF+SCKQ C PINAHS+SS               ISKE
Sbjct: 74  RVVALNKKDLANPNIMHKWVNYFESCKQDCIPINAHSKSSVTKLLELVELKLKEAISKE 132


>Medtr7g094890.1 | ribosome biogenesis GTPase A | HC |
           chr7:37900080-37894545 | 20130731
          Length = 373

 Score = 69.3 bits (168), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 48/73 (65%)

Query: 26  ITWSPGHMPAATRAILSRLKLSDLVIEVRDARIPLSSANANLQPHLSSKRRVIALNKKDL 85
           + W PGH+  A + +  +LKL D+VIEVRD RIPLS+++  +   L +K+R++ LN++D+
Sbjct: 97  VQWFPGHIAKAEKELKEQLKLMDVVIEVRDGRIPLSTSHPQMDLWLGNKKRILVLNREDM 156

Query: 86  ANPNIMHKWTSYF 98
            +    + W  YF
Sbjct: 157 ISTADRNAWAEYF 169


>Medtr2g061470.1 | P-loop nucleoside triphosphate hydrolase
           superfamily protein | HC | chr2:26052534-26057259 |
           20130731
          Length = 375

 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 5/88 (5%)

Query: 28  WSPGHMPAATRAILSRLKLSDLVIEVRDARIPLSSANANLQPHLSSKRRVIALNKKDLAN 87
           W+   M A+TRAI  R+ L DL++ V DARIP SS     Q HL +   +I LNK DLA+
Sbjct: 31  WNDPFMVASTRAIAERIPLVDLIVHVTDARIPFSS-----QCHLLTHNHIIVLNKADLAS 85

Query: 88  PNIMHKWTSYFDSCKQVCFPINAHSRSS 115
            + +  W  YF     V   ++AH++ S
Sbjct: 86  RSSLQVWMDYFRETNCVSCGVDAHNKES 113