Miyakogusa Predicted Gene

Lj0g3v0233439.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0233439.1 tr|G7K7Q6|G7K7Q6_MEDTR Oligoribonuclease
OS=Medicago truncatula GN=MTR_5g088330 PE=4
SV=1,80.42,0,OLIGORIBONUCLEASE, MITOCHONDRIAL,NULL;
RNase_T,Exonuclease, RNase T/DNA polymerase III; no
descripti,CUFF.20834.1
         (235 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g088337.1 | ribonuclease H superfamily polynucleotidyl tra...   389   e-108

>Medtr5g088337.1 | ribonuclease H superfamily polynucleotidyl
           transferase | HC | chr5:38329513-38333846 | 20130731
          Length = 265

 Score =  389 bits (999), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/241 (80%), Positives = 213/241 (88%), Gaps = 8/241 (3%)

Query: 1   MENLANSFSVLELDADDSDVQPLPT-SGTTGKKVNGKADTPLVNTDKQDPENPY----KL 55
           MENL NSFSVLELDADDS +QPL   SG++GKK NGKA  P V  +KQD  NPY    +L
Sbjct: 1   MENLVNSFSVLELDADDSTIQPLSLPSGSSGKKANGKA-LP-VKIEKQDQHNPYLSDYRL 58

Query: 56  PLVWIDLEMTGLNIEVDRILEIACIITDGNLTKSVEGPDLVIHQTKECLDRMGEWCQSHH 115
           PLVWIDLEMTGLNIE+DRILEIACIITDGNLTKSVEGPDLVIHQTKECLD MGEWC+SHH
Sbjct: 59  PLVWIDLEMTGLNIELDRILEIACIITDGNLTKSVEGPDLVIHQTKECLDGMGEWCKSHH 118

Query: 116 AASGLTKRVLESTISEREAEKQVIDFVKKHV-GKYTPLLAGNSIYVDLQYLKKYMPELAG 174
           AASGLTK+VL+STISEREAE+QVI+FVKKHV G Y PLLAGNSIYVDLQY+KKYMPELAG
Sbjct: 119 AASGLTKKVLQSTISEREAEEQVIEFVKKHVGGTYKPLLAGNSIYVDLQYMKKYMPELAG 178

Query: 175 LFPHVLVDVSSVKALCIRWYPRDQKKAPIKENKHRALDDIRESIEELRYYKANIFKPKSK 234
           +F HV+VDVSS+ ALCIRWYP+DQKK P K+ +HRALDDIRESIEEL+YYKANIFKPK  
Sbjct: 179 IFSHVVVDVSSISALCIRWYPKDQKKVPTKQKRHRALDDIRESIEELKYYKANIFKPKCP 238

Query: 235 K 235
           K
Sbjct: 239 K 239