Miyakogusa Predicted Gene

Lj0g3v0231399.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0231399.1 tr|B6SUJ7|B6SUJ7_MAIZE Photosystem II core
complex proteins psbY OS=Zea mays PE=2
SV=1,56.03,1e-18,PsbY,Photosystem II PsbY; seg,NULL;
PSII_PsbY,Photosystem II PsbY,CUFF.15158.1
         (204 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g086230.1 | photosystem II core complex family psbY protei...   170   8e-43
Medtr8g089610.1 | photosystem II core complex family psbY protei...   165   3e-41
Medtr2g046810.1 | photosystem II core complex protein psbY, puta...    78   6e-15

>Medtr3g086230.1 | photosystem II core complex family psbY protein |
           HC | chr3:39017750-39016812 | 20130731
          Length = 197

 Score =  170 bits (431), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 106/195 (54%), Positives = 121/195 (62%), Gaps = 9/195 (4%)

Query: 12  NSKCFTTKMINPTNTKLTASKPTTLFS--FQNLPKGLSSAENTSVSTTSMAGTAIAGAIF 69
           N+KC  T +    N   T    +T  +   QNLPKGL S +NT+  + S+A   IAGAIF
Sbjct: 10  NTKCLNTGLPKLQNLSTTTKLTSTCKTTTMQNLPKGLVSTKNTNFVSPSLA---IAGAIF 66

Query: 70  SSLVSCDXXXXXXXXXXXXXGDNRGXXXXXXXXXXXXWVLFNILQPALNQINRMRNSNGV 129
           SSL + D             GDNRG            WVLFNILQPALNQINRMRN+ GV
Sbjct: 67  SSLATSDAAFAAQQIAEIAEGDNRGTLLLFVVAPAIGWVLFNILQPALNQINRMRNAKGV 126

Query: 130 IVXXXXXXXXXXXXSGMLWAPEASAGELGMIADAAAGGSDNRGQLLLFVVAPAIGWVLFN 189
           IV            SGM+   EASA E+G+IADAAAG SDNRG LLLFVVAPAI WVL+N
Sbjct: 127 IVGLGLGLGGLAA-SGMV--SEASASEIGLIADAAAG-SDNRGTLLLFVVAPAILWVLYN 182

Query: 190 ILQPALNQINRMRSE 204
           ILQPALNQINRMRS+
Sbjct: 183 ILQPALNQINRMRSD 197


>Medtr8g089610.1 | photosystem II core complex family psbY protein |
           HC | chr8:37273300-37272468 | 20130731
          Length = 202

 Score =  165 bits (418), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/198 (52%), Positives = 121/198 (61%), Gaps = 15/198 (7%)

Query: 12  NSKCFTT----KMINPTNTKLTASKPTTLFSFQNL-PKGLSSAENTSVSTTSMAGTAIAG 66
           N+K   T    K  NPT  KL  + PT+L S +NL PK + + EN  +ST S+AGTA+AG
Sbjct: 12  NAKSLNTTSSPKFHNPT--KLI-TNPTSLISLKNLLPKKIPTTENIKLST-SIAGTALAG 67

Query: 67  AIFSSLVSCDXXXXXXXXXXXXXG--DNRGXXXXXXXXXXXXWVLFNILQPALNQINRMR 124
           AIFS+L +CD             G  DNRG            WVL+NILQPALNQINRMR
Sbjct: 68  AIFSTLSTCDAAFAAQQIAEIAEGSSDNRGLALLLPLIPAIAWVLYNILQPALNQINRMR 127

Query: 125 NSNGVIVXXXXXXXXXXXXSGMLWAPEASAGELGMIADAAAGGSDNRGQLLLFVVAPAIG 184
           N  GVI+            SG +   +A A E+  IA+AA  GSDNRGQLLLFVV PAI 
Sbjct: 128 NDKGVIIGLGLGGGLAA--SGFVSTQDAIASEMTAIAEAA--GSDNRGQLLLFVVTPAIL 183

Query: 185 WVLFNILQPALNQINRMR 202
           WVL+NILQPALNQINRMR
Sbjct: 184 WVLYNILQPALNQINRMR 201



 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/45 (68%), Positives = 36/45 (80%)

Query: 160 IADAAAGGSDNRGQLLLFVVAPAIGWVLFNILQPALNQINRMRSE 204
           IA+ A G SDNRG  LL  + PAI WVL+NILQPALNQINRMR++
Sbjct: 85  IAEIAEGSSDNRGLALLLPLIPAIAWVLYNILQPALNQINRMRND 129


>Medtr2g046810.1 | photosystem II core complex protein psbY,
           putative | LC | chr2:20581202-20580738 | 20130731
          Length = 144

 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 79/165 (47%), Gaps = 29/165 (17%)

Query: 12  NSKCF-----TTKMINPTNTKLTASKPTTLFSFQNL-PKGLSSAENTSVSTTSMAGTAIA 65
           N+KC      + K+ NPT  KL  +K T+L S +NL PK + + EN  +ST S+AGT +A
Sbjct: 3   NTKCLNNTTNSPKLPNPT--KLIIAKLTSLLSLKNLIPKKIPTTENIKLST-SIAGTTLA 59

Query: 66  GAIFSSLVSCDXXXXXXXXXXXXXGDNRGXXXXXXXXXXXXWVLFNILQPALNQINRMRN 125
           GAIFS+                   DNR              VLFNILQPALNQINRMRN
Sbjct: 60  GAIFSA--------QQIAEIAEGSSDNRAIAS----------VLFNILQPALNQINRMRN 101

Query: 126 SNGVIVXXXXXXXXXXXXSGMLWAPEASAGELGMIADAAAGGSDN 170
             GVI+            SG +   +A A E+ +         DN
Sbjct: 102 DKGVII--GLGLGGGLAASGFVSTQDAMASEMVVSTQETKEHFDN 144