Miyakogusa Predicted Gene

Lj0g3v0231069.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0231069.1 tr|Q9SSL8|Q9SSL8_ARATH F3N23.29 protein
OS=Arabidopsis thaliana GN=F3N23.29 PE=4 SV=1,66.67,9e-19,
,CUFF.15112.1
         (83 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g006030.1 | hypothetical protein | HC | chr4:489118-482802...   159   8e-40

>Medtr4g006030.1 | hypothetical protein | HC | chr4:489118-482802 |
           20130731
          Length = 322

 Score =  159 bits (401), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 77/83 (92%)

Query: 1   MSTEQPCDLAYEFGDGLYDIKELPLGFPKPVKHPYPFNDHIVIYVRYLGPGVLVAQAWQE 60
           +STEQPCDLAYEFGDGLYDIKELPLGFP+PVKHPYPFND IVIYVRYLGPGV V QAWQE
Sbjct: 235 LSTEQPCDLAYEFGDGLYDIKELPLGFPRPVKHPYPFNDQIVIYVRYLGPGVSVGQAWQE 294

Query: 61  GNNLEQVPRKLCSEILMVKDYTS 83
           GN LEQ+P+KLC  ILMVKDYTS
Sbjct: 295 GNKLEQIPQKLCGGILMVKDYTS 317