Miyakogusa Predicted Gene

Lj0g3v0231049.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0231049.1 Non Characterized Hit- tr|B9SIP9|B9SIP9_RICCO
ATP-dependent clp protease ATP-binding subunit clpx,
p,60.87,3e-17,P-loop containing nucleoside triphosphate
hydrolases,NULL; no description,NULL; ClpB_D2-small,Clp
AT,CUFF.15104.1
         (120 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g091550.1 | ATP-dependent Clp protease regulatory subunit ...   172   7e-44
Medtr6g059910.1 | ATP-dependent Clp protease regulatory subunit ...    97   5e-21

>Medtr3g091550.1 | ATP-dependent Clp protease regulatory subunit
           ClpX | HC | chr3:41648807-41642783 | 20130731
          Length = 581

 Score =  172 bits (435), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 86/119 (72%), Positives = 95/119 (79%)

Query: 2   FQINGVKLHFTESALKSIARKAISKNTGARGLRSILESVLVDAMYEIPDIRTGXXXXXXX 61
           FQINGVKLHFTESA KSIAR+A+SKNTGARGLR+I+ES+LVDAMYEIPDIRTG       
Sbjct: 463 FQINGVKLHFTESARKSIARQAMSKNTGARGLRAIIESILVDAMYEIPDIRTGDDVIDAV 522

Query: 62  XXXXXXXGKDGCRGGAKILYGNGALDRYLSEQKNDSETMEASGGDHESETELPSIVASM 120
                  G +G   GAKILYG GA DRYLS++KNDSET E SGGD E+ETELPSIVASM
Sbjct: 523 VVDEDSVGGEGSVRGAKILYGRGAFDRYLSKEKNDSETTEVSGGDQEAETELPSIVASM 581


>Medtr6g059910.1 | ATP-dependent Clp protease regulatory subunit
           ClpX | HC | chr6:20566263-20573202 | 20130731
          Length = 662

 Score = 96.7 bits (239), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 56/120 (46%), Positives = 78/120 (65%), Gaps = 6/120 (5%)

Query: 4   INGVKLHFTESALKSIARKAISKNTGARGLRSILESVLVDAMYEIPDIRTGXXXXXXXXX 63
           +N VKLHFT+ AL+ IA+KA++KNTGARGLR+++E++L DAMYEIPDI+TG         
Sbjct: 546 MNEVKLHFTDKALRMIAKKAMAKNTGARGLRALIENILTDAMYEIPDIKTGSDRIDAVVV 605

Query: 64  XXXXXGK---DGCRGGAKILYGNGALDRYLSEQKNDSETMEASGGDHESETELPSIVASM 120
                G     GC  G KIL G+GAL++YL++ K DSE + A     + +++  S   SM
Sbjct: 606 DEESVGSLTAPGC--GGKILRGDGALEQYLAKIK-DSEDVVAESELQDRDSDTSSRAMSM 662