Miyakogusa Predicted Gene

Lj0g3v0230749.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0230749.3 tr|D3BRB4|D3BRB4_POLPA RING zinc
finger-containing protein OS=Polysphondylium pallidum GN=vps11
PE=4,34.15,0.000000000005,seg,NULL; VACUOLAR MEMBRANE PROTEIN PEP5,
11,NULL; VACUOLAR MEMBRANE PROTEIN RELATED,NULL; no
descri,CUFF.15081.3
         (165 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g019500.1 | vacuolar protein sorting-associated-like prote...   285   2e-77
Medtr1g019500.2 | vacuolar protein sorting-associated-like prote...    98   4e-21

>Medtr1g019500.1 | vacuolar protein sorting-associated-like protein
           | HC | chr1:5893226-5901376 | 20130731
          Length = 968

 Score =  285 bits (728), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 139/165 (84%), Positives = 147/165 (89%)

Query: 1   MYQWRKFEFFEEKYASKCVIPEXXXXXXXXXXXKNEGKKIDCCSSGRGKVVTGFDDGTVC 60
           MYQWRKFEFFEEKY +KC IPE           K + +KI+CCSSGRGKVVTGFDDGTVC
Sbjct: 1   MYQWRKFEFFEEKYVAKCTIPEEEEQDDNNVKEKEKERKIECCSSGRGKVVTGFDDGTVC 60

Query: 61  LFDRGLKFNYAFQPHSSSVLFLQQLKQRNFLVTIGEDEQLTPQNSALCLKVFDLDKMQSE 120
            FDRGLKFNY+FQPHSSSVLF+QQLKQRNFLVTIGEDEQLTPQ SALCLKVFDLDKMQSE
Sbjct: 61  FFDRGLKFNYSFQPHSSSVLFIQQLKQRNFLVTIGEDEQLTPQQSALCLKVFDLDKMQSE 120

Query: 121 SSSTASPDCVGILRIFTNQFPEAQITSFLVLEEVPPILLIAIGLD 165
           S+STASPDCVGILRIFTNQFPEA ITSF+VLEEVPPILLIAIGLD
Sbjct: 121 STSTASPDCVGILRIFTNQFPEAMITSFIVLEEVPPILLIAIGLD 165


>Medtr1g019500.2 | vacuolar protein sorting-associated-like protein
           | HC | chr1:5894248-5901376 | 20130731
          Length = 852

 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 46/49 (93%), Positives = 48/49 (97%)

Query: 117 MQSESSSTASPDCVGILRIFTNQFPEAQITSFLVLEEVPPILLIAIGLD 165
           MQSES+STASPDCVGILRIFTNQFPEA ITSF+VLEEVPPILLIAIGLD
Sbjct: 1   MQSESTSTASPDCVGILRIFTNQFPEAMITSFIVLEEVPPILLIAIGLD 49