Miyakogusa Predicted Gene

Lj0g3v0230059.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0230059.1 tr|G7K4U8|G7K4U8_MEDTR Cytochrome c oxidase
assembly protein COX15-like protein OS=Medicago truncatu,64.77,3e-19,
,NODE_74174_length_423_cov_20.888889.path1.1
         (84 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g096830.1 | cytochrome C oxidase assembly protein COX15 | ...    99   9e-22
Medtr3g095790.1 | cytochrome C oxidase assembly protein COX15 | ...    75   1e-14

>Medtr5g096830.1 | cytochrome C oxidase assembly protein COX15 |
          HC | chr5:42354450-42358871 | 20130731
          Length = 459

 Score = 99.0 bits (245), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 57/88 (64%), Positives = 66/88 (75%), Gaps = 5/88 (5%)

Query: 1  MFGRGTAFSILKRSREAA-IHKL--RGTTTRPFSHPSA-QESFKFLSPSIAS-HGFRAFR 55
          MFGRG   S LKRS+EA  I KL  R T T PFSHP+  Q+SFKF +PS+ S H FR FR
Sbjct: 1  MFGRGAVGSFLKRSKEAFFIQKLVGRNTATVPFSHPAIEQQSFKFFNPSVVSTHFFRNFR 60

Query: 56 SLPIPKGHHVSYTRSFSKVVSAGAEHKE 83
          S PIPKGHHV +TR+FS VVSAGA+H+E
Sbjct: 61 SHPIPKGHHVPFTRNFSTVVSAGAKHEE 88


>Medtr3g095790.1 | cytochrome C oxidase assembly protein COX15 | HC
           | chr3:43769208-43772320 | 20130731
          Length = 499

 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 60/91 (65%), Gaps = 17/91 (18%)

Query: 1   MFGRGTAFSILKRSREAA-IHKLRG----TTTRPFSHPSA--QESFKFLSPSIASHGFRA 53
           MFGR    +ILKRS+E   IHKL G    TTT PFSHPS+  Q+SFKF +PSI++H FR 
Sbjct: 48  MFGR----AILKRSKEICLIHKLTGRKTTTTTIPFSHPSSIQQQSFKFFNPSISTHFFRT 103

Query: 54  FRSLPIPKGHHVSYTRSFSKVVSAGAEHKEG 84
           FRS   PKGH V      SK VSAGA H EG
Sbjct: 104 FRSHNTPKGHRV------SKTVSAGAIHNEG 128