Miyakogusa Predicted Gene

Lj0g3v0229189.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0229189.1 Non Characterized Hit- tr|I1K7Y1|I1K7Y1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.382 PE=4,61.54,6e-17,no
description,NULL,CUFF.14970.1
         (116 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g101420.1 | gibberellin receptor GID1 | HC | chr3:46687780...    79   1e-15

>Medtr3g101420.1 | gibberellin receptor GID1 | HC |
           chr3:46687780-46686469 | 20130731
          Length = 316

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 49/74 (66%), Gaps = 8/74 (10%)

Query: 39  LKKVFLAGDSAGPNMGHYMVSKLNALSSAPNFNSNFNVMGLVMVNPYLWGKEPIRVEITD 98
             KVFLAGDSAG N+G+Y+  K        + N NF ++GL+MVNPY WGKEPI  E +D
Sbjct: 156 FNKVFLAGDSAGANIGNYIALK--------DHNFNFKILGLIMVNPYFWGKEPIGEETSD 207

Query: 99  TVRKKMVDLGWSFL 112
            ++++MVD  W  +
Sbjct: 208 DLKRRMVDRWWELV 221