Miyakogusa Predicted Gene
- Lj0g3v0228619.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0228619.1 Non Characterized Hit- tr|I0YZF3|I0YZF3_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,37.11,2e-18,SIN3B-RELATED,NULL,CUFF.14920.1
(150 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g062700.1 | paired amphipathic helix SIN3-like protein | H... 248 2e-66
Medtr8g062700.4 | paired amphipathic helix SIN3-like protein | H... 248 2e-66
Medtr8g062700.3 | paired amphipathic helix SIN3-like protein | H... 248 2e-66
Medtr8g062700.2 | paired amphipathic helix SIN3-like protein | H... 248 2e-66
Medtr5g036670.1 | paired amphipathic helix SIN3-like protein | H... 228 2e-60
Medtr5g036670.2 | paired amphipathic helix SIN3-like protein | H... 228 2e-60
Medtr6g008970.1 | paired amphipathic helix SIN3-like protein | H... 184 3e-47
Medtr5g033370.1 | transmembrane protein, putative | LC | chr5:14... 90 8e-19
>Medtr8g062700.1 | paired amphipathic helix SIN3-like protein | HC |
chr8:26215827-26198402 | 20130731
Length = 1406
Score = 248 bits (633), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/150 (82%), Positives = 130/150 (86%), Gaps = 3/150 (2%)
Query: 1 MDNKLLQLFTYEQSRKPGKFVDLVYHENARVLLPDENIYRIECSAAPTRLSIQLMRYGHD 60
MDNKLLQL+ YEQSRK G F D+VYHENARVLL DENIYRIECS PTRLSIQLM YGHD
Sbjct: 1225 MDNKLLQLYAYEQSRKSGSFFDVVYHENARVLLHDENIYRIECS--PTRLSIQLMDYGHD 1282
Query: 61 KPEVAAVTMDPNFSAYLHNDFLSVVPDKKEKSGIFLKRNKRKYASIDDEHSSQVMDGLQV 120
KPEV AV++DPNFS YLHNDFLSVVPD KEKSGIFLKRNK K A DE SSQVMDG+QV
Sbjct: 1283 KPEVTAVSIDPNFSTYLHNDFLSVVPDSKEKSGIFLKRNKLKCAR-SDELSSQVMDGIQV 1341
Query: 121 INGLECKIACNSSKVSYVLDTEDFLFRTRR 150
INGLECKIAC SSKVSYVLDTED L RT+R
Sbjct: 1342 INGLECKIACGSSKVSYVLDTEDSLIRTKR 1371
>Medtr8g062700.4 | paired amphipathic helix SIN3-like protein | HC |
chr8:26215827-26198402 | 20130731
Length = 1406
Score = 248 bits (633), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/150 (82%), Positives = 130/150 (86%), Gaps = 3/150 (2%)
Query: 1 MDNKLLQLFTYEQSRKPGKFVDLVYHENARVLLPDENIYRIECSAAPTRLSIQLMRYGHD 60
MDNKLLQL+ YEQSRK G F D+VYHENARVLL DENIYRIECS PTRLSIQLM YGHD
Sbjct: 1225 MDNKLLQLYAYEQSRKSGSFFDVVYHENARVLLHDENIYRIECS--PTRLSIQLMDYGHD 1282
Query: 61 KPEVAAVTMDPNFSAYLHNDFLSVVPDKKEKSGIFLKRNKRKYASIDDEHSSQVMDGLQV 120
KPEV AV++DPNFS YLHNDFLSVVPD KEKSGIFLKRNK K A DE SSQVMDG+QV
Sbjct: 1283 KPEVTAVSIDPNFSTYLHNDFLSVVPDSKEKSGIFLKRNKLKCAR-SDELSSQVMDGIQV 1341
Query: 121 INGLECKIACNSSKVSYVLDTEDFLFRTRR 150
INGLECKIAC SSKVSYVLDTED L RT+R
Sbjct: 1342 INGLECKIACGSSKVSYVLDTEDSLIRTKR 1371
>Medtr8g062700.3 | paired amphipathic helix SIN3-like protein | HC |
chr8:26215827-26198402 | 20130731
Length = 1405
Score = 248 bits (633), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/150 (82%), Positives = 130/150 (86%), Gaps = 3/150 (2%)
Query: 1 MDNKLLQLFTYEQSRKPGKFVDLVYHENARVLLPDENIYRIECSAAPTRLSIQLMRYGHD 60
MDNKLLQL+ YEQSRK G F D+VYHENARVLL DENIYRIECS PTRLSIQLM YGHD
Sbjct: 1224 MDNKLLQLYAYEQSRKSGSFFDVVYHENARVLLHDENIYRIECS--PTRLSIQLMDYGHD 1281
Query: 61 KPEVAAVTMDPNFSAYLHNDFLSVVPDKKEKSGIFLKRNKRKYASIDDEHSSQVMDGLQV 120
KPEV AV++DPNFS YLHNDFLSVVPD KEKSGIFLKRNK K A DE SSQVMDG+QV
Sbjct: 1282 KPEVTAVSIDPNFSTYLHNDFLSVVPDSKEKSGIFLKRNKLKCAR-SDELSSQVMDGIQV 1340
Query: 121 INGLECKIACNSSKVSYVLDTEDFLFRTRR 150
INGLECKIAC SSKVSYVLDTED L RT+R
Sbjct: 1341 INGLECKIACGSSKVSYVLDTEDSLIRTKR 1370
>Medtr8g062700.2 | paired amphipathic helix SIN3-like protein | HC |
chr8:26215827-26198402 | 20130731
Length = 1405
Score = 248 bits (633), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/150 (82%), Positives = 130/150 (86%), Gaps = 3/150 (2%)
Query: 1 MDNKLLQLFTYEQSRKPGKFVDLVYHENARVLLPDENIYRIECSAAPTRLSIQLMRYGHD 60
MDNKLLQL+ YEQSRK G F D+VYHENARVLL DENIYRIECS PTRLSIQLM YGHD
Sbjct: 1224 MDNKLLQLYAYEQSRKSGSFFDVVYHENARVLLHDENIYRIECS--PTRLSIQLMDYGHD 1281
Query: 61 KPEVAAVTMDPNFSAYLHNDFLSVVPDKKEKSGIFLKRNKRKYASIDDEHSSQVMDGLQV 120
KPEV AV++DPNFS YLHNDFLSVVPD KEKSGIFLKRNK K A DE SSQVMDG+QV
Sbjct: 1282 KPEVTAVSIDPNFSTYLHNDFLSVVPDSKEKSGIFLKRNKLKCAR-SDELSSQVMDGIQV 1340
Query: 121 INGLECKIACNSSKVSYVLDTEDFLFRTRR 150
INGLECKIAC SSKVSYVLDTED L RT+R
Sbjct: 1341 INGLECKIACGSSKVSYVLDTEDSLIRTKR 1370
>Medtr5g036670.1 | paired amphipathic helix SIN3-like protein | HC |
chr5:16035547-16020987 | 20130731
Length = 1409
Score = 228 bits (581), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/149 (77%), Positives = 126/149 (84%), Gaps = 3/149 (2%)
Query: 1 MDNKLLQLFTYEQSRKPGKFVDLVYHENARVLLPDENIYRIECSAAPTRLSIQLMRYGHD 60
MDNKLLQL+ YE+SRKPGKFVD+VYHENARVLL DENIYRIE S P LSIQLM G++
Sbjct: 1228 MDNKLLQLYAYEKSRKPGKFVDIVYHENARVLLHDENIYRIEYSPKPKTLSIQLMDCGNE 1287
Query: 61 KPEVAAVTMDPNFSAYLHNDFLSVVPDKKEKSGIFLKRNKRKYASIDDEHSSQVMDGLQV 120
K EV AV +DPNFSAYLHNDFLS+ DK K GIFLKRNKR YA DE SS+VM+GLQ+
Sbjct: 1288 KHEVTAVLVDPNFSAYLHNDFLSIASDK--KLGIFLKRNKRGYA-CSDEFSSEVMEGLQI 1344
Query: 121 INGLECKIACNSSKVSYVLDTEDFLFRTR 149
INGLECKIA NSSKVSYVLDTEDFLFRTR
Sbjct: 1345 INGLECKIASNSSKVSYVLDTEDFLFRTR 1373
>Medtr5g036670.2 | paired amphipathic helix SIN3-like protein | HC |
chr5:16035542-16021022 | 20130731
Length = 1409
Score = 228 bits (581), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/149 (77%), Positives = 126/149 (84%), Gaps = 3/149 (2%)
Query: 1 MDNKLLQLFTYEQSRKPGKFVDLVYHENARVLLPDENIYRIECSAAPTRLSIQLMRYGHD 60
MDNKLLQL+ YE+SRKPGKFVD+VYHENARVLL DENIYRIE S P LSIQLM G++
Sbjct: 1228 MDNKLLQLYAYEKSRKPGKFVDIVYHENARVLLHDENIYRIEYSPKPKTLSIQLMDCGNE 1287
Query: 61 KPEVAAVTMDPNFSAYLHNDFLSVVPDKKEKSGIFLKRNKRKYASIDDEHSSQVMDGLQV 120
K EV AV +DPNFSAYLHNDFLS+ DK K GIFLKRNKR YA DE SS+VM+GLQ+
Sbjct: 1288 KHEVTAVLVDPNFSAYLHNDFLSIASDK--KLGIFLKRNKRGYA-CSDEFSSEVMEGLQI 1344
Query: 121 INGLECKIACNSSKVSYVLDTEDFLFRTR 149
INGLECKIA NSSKVSYVLDTEDFLFRTR
Sbjct: 1345 INGLECKIASNSSKVSYVLDTEDFLFRTR 1373
>Medtr6g008970.1 | paired amphipathic helix SIN3-like protein | HC |
chr6:2536170-2526712 | 20130731
Length = 1387
Score = 184 bits (466), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 90/143 (62%), Positives = 115/143 (80%), Gaps = 1/143 (0%)
Query: 2 DNKLLQLFTYEQSRKPGKFVDLVYHENARVLLPDENIYRIECSAAPTRLSIQLMRYGHDK 61
D KLLQL+ YE+SRKPGK D VYH NA V+L +ENIYR +CS++ +RLSIQLM ++K
Sbjct: 1203 DAKLLQLYEYEKSRKPGKLNDSVYHSNAHVILHEENIYRFQCSSSSSRLSIQLMDNMNEK 1262
Query: 62 PEVAAVTMDPNFSAYLHNDFLSVVPDKKEKSGIFLKRNKRKYASIDDEHS-SQVMDGLQV 120
PE+AAV +DP+FS YLHNDFLSV+P KKE GI L+RNK KY +D+ + VM+ ++V
Sbjct: 1263 PEIAAVAVDPDFSFYLHNDFLSVLPGKKEPHGILLERNKPKYGDLDELSAICAVMEDVKV 1322
Query: 121 INGLECKIACNSSKVSYVLDTED 143
+NGLECKI+CNSSK+SYVLDT+D
Sbjct: 1323 VNGLECKISCNSSKISYVLDTQD 1345
>Medtr5g033370.1 | transmembrane protein, putative | LC |
chr5:14388047-14390170 | 20130731
Length = 239
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 67/103 (65%), Gaps = 2/103 (1%)
Query: 1 MDNKLLQLFTYEQSRKPGKFVDLVYHENARVLLPDENIYRIECSAAPTRLSIQLMRYGHD 60
MDNKLLQL+ +++SRK GKFVD+VYHEN+RV L DENIY IE S P LSIQ + +G++
Sbjct: 130 MDNKLLQLYAFDKSRKLGKFVDIVYHENSRV-LHDENIYCIEYSPKPKTLSIQFIDFGNE 188
Query: 61 KPEVAAVT-MDPNFSAYLHNDFLSVVPDKKEKSGIFLKRNKRK 102
K EV V+ MDP F F V + +F R++RK
Sbjct: 189 KHEVTTVSMMDPIFKPIFTVIFFYVSFILDMEDFLFGMRSRRK 231