Miyakogusa Predicted Gene
- Lj0g3v0227509.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0227509.1 tr|F2DQ54|F2DQ54_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,34.27,7e-19,SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; seg,NULL; PORR,Plant organelle RNA
recognition doma,CUFF.14828.1
(244 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g074730.1 | plant organelle RNA recognition domain protein... 305 3e-83
Medtr7g117270.1 | plant organelle RNA recognition domain protein... 107 7e-24
Medtr0153s0070.2 | plant organelle RNA recognition domain protei... 103 2e-22
Medtr3g105530.1 | plant organelle RNA recognition domain protein... 102 3e-22
Medtr0153s0070.1 | plant organelle RNA recognition domain protei... 102 3e-22
Medtr1g072550.1 | plant organelle RNA recognition domain protein... 72 6e-13
Medtr1g072550.2 | plant organelle RNA recognition domain protein... 72 6e-13
Medtr1g032380.1 | plant organelle RNA recognition domain protein... 70 2e-12
Medtr1g032040.1 | plant organelle RNA recognition domain protein... 70 2e-12
Medtr3g029990.2 | ubiquitin carboxyl-terminal hydrolase family p... 68 6e-12
Medtr3g029990.1 | ubiquitin carboxyl-terminal hydrolase family p... 68 7e-12
Medtr1g019170.4 | plant organelle RNA recognition domain protein... 68 8e-12
Medtr1g019170.3 | plant organelle RNA recognition domain protein... 68 8e-12
Medtr1g019170.1 | plant organelle RNA recognition domain protein... 68 8e-12
Medtr1g019170.2 | plant organelle RNA recognition domain protein... 68 8e-12
Medtr3g083350.1 | plant organelle RNA recognition domain protein... 67 2e-11
Medtr1g098960.1 | plant organelle RNA recognition domain protein... 66 2e-11
Medtr3g448960.1 | plant organelle RNA recognition domain protein... 66 3e-11
Medtr6g033595.1 | plant organelle RNA recognition domain protein... 60 1e-09
Medtr3g030020.1 | plant organelle RNA recognition domain protein... 60 3e-09
Medtr2g017885.1 | plant organelle RNA recognition domain protein... 59 3e-09
Medtr7g107280.1 | plant organelle RNA recognition domain protein... 58 7e-09
Medtr4g053720.1 | plant organelle RNA recognition domain protein... 54 1e-07
Medtr7g088530.1 | plant organelle RNA recognition domain protein... 54 1e-07
Medtr2g067960.1 | plant organelle RNA recognition domain protein... 53 3e-07
Medtr6g043850.1 | plant organelle RNA recognition domain protein... 53 3e-07
Medtr7g009010.1 | plant organelle RNA recognition domain protein... 52 5e-07
Medtr8g089370.2 | plant organelle RNA recognition domain protein... 48 6e-06
Medtr8g089370.1 | plant organelle RNA recognition domain protein... 48 6e-06
>Medtr3g074730.1 | plant organelle RNA recognition domain protein |
HC | chr3:33769164-33767587 | 20130731
Length = 404
Score = 305 bits (780), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 155/246 (63%), Positives = 189/246 (76%), Gaps = 10/246 (4%)
Query: 6 FSIFKSSKTLSPKNPNPNFFTAP--FSTSFLVXXXXXXXXXXXXXXXSPRTNPVQPQPNR 63
FS F SKT KN N ++FTA FSTSFLV SPRTNP+Q +PNR
Sbjct: 3 FSSFFISKTF--KNHN-HYFTAKAKFSTSFLVTKTPKKLKKKHKPKSSPRTNPIQTEPNR 59
Query: 64 IAELERILDRDALLRFVTKSKQFLSSQPEHVLRLDDAGKLHRELGFPRGRKVSRFIQDHP 123
+ E+I+ R+ L+RFVT+SK +LS+QPEHVL+LDDAGKLHRELGFPRGRK+++ IQ HP
Sbjct: 60 VTAFEQIVKRETLMRFVTRSKNYLSNQPEHVLQLDDAGKLHRELGFPRGRKIAKSIQQHP 119
Query: 124 LLFQTYRHSDGKMWLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRRLLMMSARNRIALSKI 183
LF TYRH+DGKMW GFTDLME+LLAEE+ IM+SME DRV+KVR+LLMMS +RI+L+KI
Sbjct: 120 PLFLTYRHTDGKMWFGFTDLMEELLAEEKSIMESMELDRVEKVRKLLMMSRFHRISLAKI 179
Query: 184 HHCRTLFGIPHDFRDRVAKYPGFFRVVVESDGR-----RVLELVNWDPVLAVSALEREFV 238
HH R LFGIP DFRDRV KYP +FR+V + + RVLELVNWDP+LAVSA+E+EF+
Sbjct: 180 HHVRNLFGIPDDFRDRVEKYPNYFRIVDDKNKDDGKKVRVLELVNWDPLLAVSAIEKEFM 239
Query: 239 VDEDGA 244
V+ED A
Sbjct: 240 VNEDDA 245
>Medtr7g117270.1 | plant organelle RNA recognition domain protein |
HC | chr7:48441549-48444050 | 20130731
Length = 530
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 96/182 (52%), Gaps = 4/182 (2%)
Query: 56 PVQPQPNRIAEL--ERILDRDALLRFVTKSKQFLSSQPEHVLRLDDAGKLHRELGFPRGR 113
P+ R EL + ++ +D L+FV K ++ L S+P V+ L + GK RELG + R
Sbjct: 79 PISAAVKRRKELPFDNVIQKDKKLKFVLKVRKILVSKPTRVMSLQELGKYRRELGLDKKR 138
Query: 114 KVSRFIQDHPLLFQTYRHSDGKMWLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRRLLMMS 173
K+ ++ P +F+ + T E L EE + + ME V K+R+LLMM
Sbjct: 139 KLIVILRRFPGVFEIVEDGCYSLKFKMTSEAEKLYLEELRVRNEMEDVVVTKLRKLLMMP 198
Query: 174 ARNRIALSKIHHCRTLFGIPHDFRDRVA-KYPGFFRVVVESDGRRVLELVNWDPVLAVSA 232
RI L KI H G+P +FRD + +YP FF+VV G LEL +WDP LAVSA
Sbjct: 199 LEKRILLEKIGHLANDLGLPREFRDTICHRYPEFFKVVQTERGP-ALELTHWDPHLAVSA 257
Query: 233 LE 234
E
Sbjct: 258 AE 259
>Medtr0153s0070.2 | plant organelle RNA recognition domain protein |
HC | scaffold0153:34902-38440 | 20130731
Length = 335
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 96/179 (53%), Gaps = 2/179 (1%)
Query: 60 QPNRIAELERILDRDALLRFVTKSKQFLSSQPEHVLRLDDAGKLHRELGFPRGRKVSRFI 119
+ R+ ELE ++ + + + L +PE V+ + +++ P+ ++S F+
Sbjct: 42 KKKRVHELEAATEKWKITSKIVFLIELLEQEPEIVIPVRSLSHYRKQISLPKPHRISDFL 101
Query: 120 QDHPLLFQTYRHSDGKMWLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRRLLMMSARNRIA 179
+ P LF+ Y+ +G +W G T E L+ E + +++ E + V RLLMMS R+
Sbjct: 102 RKTPKLFELYKDRNGVLWCGLTQKAEVLMEEHKRVIEENEDKAAEYVTRLLMMSVDKRVQ 161
Query: 180 LSKIHHCRTLFGIPHDFRDR-VAKYPGFFRVVVES-DGRRVLELVNWDPVLAVSALERE 236
L KI H R FG+P DFR V KYP FRVV S D LELV+W+ A++ +E++
Sbjct: 162 LDKIAHFRRDFGLPMDFRTHWVHKYPQLFRVVKPSLDDVEFLELVSWNSEWAITEIEKK 220
>Medtr3g105530.1 | plant organelle RNA recognition domain protein |
HC | chr3:48661486-48663294 | 20130731
Length = 431
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 96/179 (53%), Gaps = 2/179 (1%)
Query: 60 QPNRIAELERILDRDALLRFVTKSKQFLSSQPEHVLRLDDAGKLHRELGFPRGRKVSRFI 119
+ R+ ELE ++ + + + L +PE V+ + +++ P+ ++S F+
Sbjct: 35 KKKRVHELEAATEKWKITSKIVFLIELLEQEPEIVIPVRSLSHYRKQISLPKPHRISDFL 94
Query: 120 QDHPLLFQTYRHSDGKMWLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRRLLMMSARNRIA 179
+ P LF+ Y+ +G +W G T E L+ E + +++ E + V RLLMMS R+
Sbjct: 95 RKTPKLFELYKDRNGVLWCGLTQKAEVLMEEHKRVIEENEDKAAEYVTRLLMMSVDKRVQ 154
Query: 180 LSKIHHCRTLFGIPHDFRDR-VAKYPGFFRVVVES-DGRRVLELVNWDPVLAVSALERE 236
L KI H R FG+P DFR V KYP FRVV S D LELV+W+ A++ +E++
Sbjct: 155 LDKIAHFRRDFGLPMDFRTHWVHKYPQLFRVVKPSLDDVEFLELVSWNSEWAITEIEKK 213
>Medtr0153s0070.1 | plant organelle RNA recognition domain protein |
HC | scaffold0153:36398-37624 | 20130731
Length = 373
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 95/178 (53%), Gaps = 2/178 (1%)
Query: 60 QPNRIAELERILDRDALLRFVTKSKQFLSSQPEHVLRLDDAGKLHRELGFPRGRKVSRFI 119
+ R+ ELE ++ + + + L +PE V+ + +++ P+ ++S F+
Sbjct: 12 KKKRVHELEAATEKWKITSKIVFLIELLEQEPEIVIPVRSLSHYRKQISLPKPHRISDFL 71
Query: 120 QDHPLLFQTYRHSDGKMWLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRRLLMMSARNRIA 179
+ P LF+ Y+ +G +W G T E L+ E + +++ E + V RLLMMS R+
Sbjct: 72 RKTPKLFELYKDRNGVLWCGLTQKAEVLMEEHKRVIEENEDKAAEYVTRLLMMSVDKRVQ 131
Query: 180 LSKIHHCRTLFGIPHDFRDR-VAKYPGFFRVVVES-DGRRVLELVNWDPVLAVSALER 235
L KI H R FG+P DFR V KYP FRVV S D LELV+W+ A++ +E+
Sbjct: 132 LDKIAHFRRDFGLPMDFRTHWVHKYPQLFRVVKPSLDDVEFLELVSWNSEWAITEIEK 189
>Medtr1g072550.1 | plant organelle RNA recognition domain protein |
HC | chr1:32201119-32198282 | 20130731
Length = 393
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 7/129 (5%)
Query: 114 KVSRFIQDHPLLFQTYR-----HSDGKMWLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRR 168
K+ F+ +P LF Y ++ +L +D + L EE+ I E V K+ +
Sbjct: 86 KIDTFLNQNPFLFDVYYDRIKPKTEPVKFLRVSDHLLQFLQEEKRIYKENEPLIVSKLCK 145
Query: 169 LLMMSARNRIALSKIHHCRTLFGIPHDFR-DRVAKYPGFFRVV-VESDGRRVLELVNWDP 226
LLMMS ++ K+ H + FG P+DF D V +YP +FR+ + +G+ LELVNW+P
Sbjct: 146 LLMMSKDKIVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVNWNP 205
Query: 227 VLAVSALER 235
A S +ER
Sbjct: 206 EFAKSVIER 214
>Medtr1g072550.2 | plant organelle RNA recognition domain protein |
HC | chr1:32201119-32199304 | 20130731
Length = 393
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 7/129 (5%)
Query: 114 KVSRFIQDHPLLFQTYR-----HSDGKMWLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRR 168
K+ F+ +P LF Y ++ +L +D + L EE+ I E V K+ +
Sbjct: 86 KIDTFLNQNPFLFDVYYDRIKPKTEPVKFLRVSDHLLQFLQEEKRIYKENEPLIVSKLCK 145
Query: 169 LLMMSARNRIALSKIHHCRTLFGIPHDFR-DRVAKYPGFFRVV-VESDGRRVLELVNWDP 226
LLMMS ++ K+ H + FG P+DF D V +YP +FR+ + +G+ LELVNW+P
Sbjct: 146 LLMMSKDKIVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVNWNP 205
Query: 227 VLAVSALER 235
A S +ER
Sbjct: 206 EFAKSVIER 214
>Medtr1g032380.1 | plant organelle RNA recognition domain protein |
HC | chr1:11495605-11496780 | 20130731
Length = 391
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 7/129 (5%)
Query: 114 KVSRFIQDHPLLFQTYR-----HSDGKMWLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRR 168
K+ F+ +P LF Y + +L +D + L EE+ I E V K+ +
Sbjct: 86 KIDTFLNQNPFLFDVYYDRIKPKTKPVKFLRVSDHLLQFLEEEKRIYKENEPLIVSKLCK 145
Query: 169 LLMMSARNRIALSKIHHCRTLFGIPHDFR-DRVAKYPGFFRVV-VESDGRRVLELVNWDP 226
LLMMS ++ K+ H + FG P+DF D V +YP +FR+ + +G+ LELVNW+P
Sbjct: 146 LLMMSKDKVVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVNWNP 205
Query: 227 VLAVSALER 235
A S +E+
Sbjct: 206 EFAKSVVEK 214
>Medtr1g032040.1 | plant organelle RNA recognition domain protein |
HC | chr1:11336962-11338761 | 20130731
Length = 391
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 7/129 (5%)
Query: 114 KVSRFIQDHPLLFQTYR-----HSDGKMWLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRR 168
K+ F+ +P LF Y + +L +D + L EE+ I E V K+ +
Sbjct: 86 KIDTFLNQNPFLFDVYYDRIKPKTKPVKFLRVSDHLLQFLEEEKRIYKENEPLIVSKLCK 145
Query: 169 LLMMSARNRIALSKIHHCRTLFGIPHDFR-DRVAKYPGFFRVV-VESDGRRVLELVNWDP 226
LLMMS ++ K+ H + FG P+DF D V +YP +FR+ + +G+ LELVNW+P
Sbjct: 146 LLMMSKDKVVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVNWNP 205
Query: 227 VLAVSALER 235
A S +E+
Sbjct: 206 EFAKSVVEK 214
>Medtr3g029990.2 | ubiquitin carboxyl-terminal hydrolase family
protein | HC | chr3:9456270-9464177 | 20130731
Length = 626
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 69/125 (55%), Gaps = 10/125 (8%)
Query: 114 KVSRFIQDHPLLFQTYRHSDGKMWLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRRLLMMS 173
K +I +P FQ H D + T M +L+ EEQ + DS+E V ++ +LLM+S
Sbjct: 76 KALNWISKYPSCFQF--HQDHVL---LTKRMMELVHEEQSLKDSLESVFVPRLAKLLMLS 130
Query: 174 ARNRIALSKIHHCRTLFGIPHDFR-DRVAKYPGFFRVVVESDGRR---VLELVNWDPVLA 229
N + + KI+ + G P D+ VAKYP FR+ ES GRR V+EL+ W+P A
Sbjct: 131 LNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNES-GRRSSMVVELMKWNPDFA 189
Query: 230 VSALE 234
VS +E
Sbjct: 190 VSEVE 194
>Medtr3g029990.1 | ubiquitin carboxyl-terminal hydrolase family
protein | HC | chr3:9456270-9462535 | 20130731
Length = 630
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 69/125 (55%), Gaps = 10/125 (8%)
Query: 114 KVSRFIQDHPLLFQTYRHSDGKMWLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRRLLMMS 173
K +I +P FQ H D + T M +L+ EEQ + DS+E V ++ +LLM+S
Sbjct: 76 KALNWISKYPSCFQF--HQDHVL---LTKRMMELVHEEQSLKDSLESVFVPRLAKLLMLS 130
Query: 174 ARNRIALSKIHHCRTLFGIPHDFR-DRVAKYPGFFRVVVESDGRR---VLELVNWDPVLA 229
N + + KI+ + G P D+ VAKYP FR+ ES GRR V+EL+ W+P A
Sbjct: 131 LNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNES-GRRSSMVVELMKWNPDFA 189
Query: 230 VSALE 234
VS +E
Sbjct: 190 VSEVE 194
>Medtr1g019170.4 | plant organelle RNA recognition domain protein |
HC | chr1:5720388-5724512 | 20130731
Length = 416
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 69/125 (55%), Gaps = 10/125 (8%)
Query: 114 KVSRFIQDHPLLFQTYRHSDGKMWLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRRLLMMS 173
K +I +P FQ H D + T M +L+ EEQ + DS+E V ++ +LLM+S
Sbjct: 76 KALNWISKYPSCFQF--HQDHVL---LTKRMMELVHEEQSLKDSLESVFVPRLAKLLMLS 130
Query: 174 ARNRIALSKIHHCRTLFGIPHDFR-DRVAKYPGFFRVVVESDGRR---VLELVNWDPVLA 229
N + + KI+ + G P D+ VAKYP FR+ ES GRR V+EL+ W+P A
Sbjct: 131 LNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNES-GRRSSMVVELMKWNPDFA 189
Query: 230 VSALE 234
VS +E
Sbjct: 190 VSEVE 194
>Medtr1g019170.3 | plant organelle RNA recognition domain protein |
HC | chr1:5720163-5724512 | 20130731
Length = 416
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 69/125 (55%), Gaps = 10/125 (8%)
Query: 114 KVSRFIQDHPLLFQTYRHSDGKMWLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRRLLMMS 173
K +I +P FQ H D + T M +L+ EEQ + DS+E V ++ +LLM+S
Sbjct: 76 KALNWISKYPSCFQF--HQDHVL---LTKRMMELVHEEQSLKDSLESVFVPRLAKLLMLS 130
Query: 174 ARNRIALSKIHHCRTLFGIPHDFR-DRVAKYPGFFRVVVESDGRR---VLELVNWDPVLA 229
N + + KI+ + G P D+ VAKYP FR+ ES GRR V+EL+ W+P A
Sbjct: 131 LNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNES-GRRSSMVVELMKWNPDFA 189
Query: 230 VSALE 234
VS +E
Sbjct: 190 VSEVE 194
>Medtr1g019170.1 | plant organelle RNA recognition domain protein |
HC | chr1:5720173-5724512 | 20130731
Length = 416
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 69/125 (55%), Gaps = 10/125 (8%)
Query: 114 KVSRFIQDHPLLFQTYRHSDGKMWLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRRLLMMS 173
K +I +P FQ H D + T M +L+ EEQ + DS+E V ++ +LLM+S
Sbjct: 76 KALNWISKYPSCFQF--HQDHVL---LTKRMMELVHEEQSLKDSLESVFVPRLAKLLMLS 130
Query: 174 ARNRIALSKIHHCRTLFGIPHDFR-DRVAKYPGFFRVVVESDGRR---VLELVNWDPVLA 229
N + + KI+ + G P D+ VAKYP FR+ ES GRR V+EL+ W+P A
Sbjct: 131 LNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNES-GRRSSMVVELMKWNPDFA 189
Query: 230 VSALE 234
VS +E
Sbjct: 190 VSEVE 194
>Medtr1g019170.2 | plant organelle RNA recognition domain protein |
HC | chr1:5720163-5724512 | 20130731
Length = 416
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 69/125 (55%), Gaps = 10/125 (8%)
Query: 114 KVSRFIQDHPLLFQTYRHSDGKMWLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRRLLMMS 173
K +I +P FQ H D + T M +L+ EEQ + DS+E V ++ +LLM+S
Sbjct: 76 KALNWISKYPSCFQF--HQDHVL---LTKRMMELVHEEQSLKDSLESVFVPRLAKLLMLS 130
Query: 174 ARNRIALSKIHHCRTLFGIPHDFR-DRVAKYPGFFRVVVESDGRR---VLELVNWDPVLA 229
N + + KI+ + G P D+ VAKYP FR+ ES GRR V+EL+ W+P A
Sbjct: 131 LNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNES-GRRSSMVVELMKWNPDFA 189
Query: 230 VSALE 234
VS +E
Sbjct: 190 VSEVE 194
>Medtr3g083350.1 | plant organelle RNA recognition domain protein |
HC | chr3:37619083-37621215 | 20130731
Length = 568
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 17/185 (9%)
Query: 68 ERILDRDALLR----FVTKSKQFLSSQPEHVLRLDDAGKLHRELGFPRGRKVSRFIQDHP 123
+R LDR ++R FV K K L S+P+H L + K L + R + I +P
Sbjct: 59 DRTLDRHVVMRNRIRFVQKLKTLLLSKPKHFLPIKILSKCRAYLSLHKPRSLLSMIHRYP 118
Query: 124 LLFQTYRHSDGKMWLGFTDLMEDLLAE-----------EQCIMDSMEKDRVDKVRRLLMM 172
+F+ + L T L L E + S+ +K+++LLM+
Sbjct: 119 SIFELFTIPWPPTPLNATKLYPQLCVRLTPAAAALAAEELNLKSSISTVLANKLQKLLML 178
Query: 173 SARNRIALSKIHHCRTLFGIPHDFRDRVAK-YPGFFRVVVESDGRRVLELVNWDPVLAVS 231
S+ R+ L+K+ H G+P +FR R+ +P F++V S G R LELV+WD LA
Sbjct: 179 SSHRRLLLAKLVHLAPDLGLPPNFRSRLCNDHPDKFKIVDTSYG-RALELVSWDTNLAKP 237
Query: 232 ALERE 236
RE
Sbjct: 238 LPPRE 242
>Medtr1g098960.1 | plant organelle RNA recognition domain protein |
HC | chr1:44599463-44600719 | 20130731
Length = 418
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 69/125 (55%), Gaps = 10/125 (8%)
Query: 114 KVSRFIQDHPLLFQTYRHSDGKMWLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRRLLMMS 173
K +I +P FQ H D + T M L+ EEQ + DS+E V ++ +LLM+S
Sbjct: 78 KALNWISKYPSCFQF--HQDHVL---LTKRMMKLVHEEQSLKDSLESVFVLRLAKLLMLS 132
Query: 174 ARNRIALSKIHHCRTLFGIPHDFR-DRVAKYPGFFRVVVESDGRR---VLELVNWDPVLA 229
N + + KI+ + FG+P D+ VAKY FR+ ES GRR V+EL+ W+P A
Sbjct: 133 LNNCLNVMKINEIKNSFGLPDDYLIGIVAKYSDLFRIRNES-GRRSSMVVELMKWNPDFA 191
Query: 230 VSALE 234
VS +E
Sbjct: 192 VSEVE 196
>Medtr3g448960.1 | plant organelle RNA recognition domain protein |
HC | chr3:16485012-16487013 | 20130731
Length = 463
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 69/125 (55%), Gaps = 10/125 (8%)
Query: 114 KVSRFIQDHPLLFQTYRHSDGKMWLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRRLLMMS 173
K +I +P FQ H D + T M L+ EEQ + DS+E V ++ +LLM+S
Sbjct: 78 KALNWISKYPSCFQF--HQDHVL---LTKRMMKLVHEEQSLKDSLESVFVLRLAKLLMLS 132
Query: 174 ARNRIALSKIHHCRTLFGIPHDFR-DRVAKYPGFFRVVVESDGRR---VLELVNWDPVLA 229
N + + KI+ + FG+P D+ VAKY FR+ ES GRR V+EL+ W+P A
Sbjct: 133 LNNCLNVMKINEIKNSFGLPDDYLIGIVAKYSDLFRIRNES-GRRSSMVVELMKWNPDFA 191
Query: 230 VSALE 234
VS +E
Sbjct: 192 VSEVE 196
>Medtr6g033595.1 | plant organelle RNA recognition domain protein |
HC | chr6:10945964-10948263 | 20130731
Length = 466
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 104/233 (44%), Gaps = 29/233 (12%)
Query: 19 NPNPNFFTA-PFSTSFLVXXXXXXXXXXXXXXXSPRTNPVQPQPNRIAELERILDRDALL 77
NPNPNF + FS S + P + Q R + ++ +
Sbjct: 25 NPNPNFSSIREFSQSTSI--------------------PKKQQRIRDHGYDNYMEIEKKT 64
Query: 78 RFVTKSKQFLSSQPEHVLRLDDAGKLHRELGFPRGRKVSRFIQDHPLLFQTYRHSDGKMW 137
R V K + + S+P + + +GF R ++ FI +F+ + H ++
Sbjct: 65 RKVLKFQNLILSEPNQSIPISRLETQAHRIGFTRHEAIA-FILKFLHVFEIFEHPVQRIL 123
Query: 138 LGFTDLMEDLLAEEQ--CIMDSMEKDRVDKVRRLLMMSARNRIALSKIHHCRTLFGIPHD 195
L E++ + D +E+ V ++R+++MMS R+ L + R+ G+P D
Sbjct: 124 FCRLTRKAILQIEQERLALADQVERA-VTRLRKMIMMSNGLRLRLEHVRIARSALGLPDD 182
Query: 196 FRDRVA-KYPGFFRVVVESDGR-RVLELVNWDPVLAVSALE--REFVVDEDGA 244
F V +YP FFR+V + R + +ELV +DP LA A+E RE V E G+
Sbjct: 183 FEYSVVLRYPEFFRLVDAKETRNKYIELVEFDPKLAKCAIEDARERVYRERGS 235
>Medtr3g030020.1 | plant organelle RNA recognition domain protein |
HC | chr3:9470357-9471627 | 20130731
Length = 373
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 67/128 (52%), Gaps = 10/128 (7%)
Query: 110 PRGRKVSRFIQDHPLLFQTYRHSDGKMWLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRRL 169
P+ R +I +P FQ H D + T M +L+ EEQ + DS+E V ++ +L
Sbjct: 29 PKLRISLNWISKYPSCFQF--HQDHVL---LTKRMMELVHEEQSLKDSLESVFVPRLAKL 83
Query: 170 LMMSARNRIALSKIHHCRTLFGIPHDFR-DRVAKYPGFFRVVVESDGR---RVLELVNWD 225
LM S N + + KI+ + G P D+ V KYP FR+ ES GR V+EL+ W+
Sbjct: 84 LMFSLNNCLNVMKINEIKNSLGFPDDYLIGIVMKYPDLFRIRNES-GRISSMVVELMKWN 142
Query: 226 PVLAVSAL 233
P +VS +
Sbjct: 143 PDFSVSEV 150
>Medtr2g017885.1 | plant organelle RNA recognition domain protein |
HC | chr2:5564628-5564353 | 20130731
Length = 91
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 146 DLLAEEQCIMDSMEKDRVDKVRRLLMMSARNRIALSKIHHCRTLFGIPHDFR-DRVAKYP 204
+L+ EEQ DS+E V + +LLM+S N + KI+ + G P D+ VAKYP
Sbjct: 2 ELVHEEQSFKDSLEPVFVQHLAKLLMLSLNNCFSAIKINEIKNSLGFPDDYLIGIVAKYP 61
Query: 205 GFFRVVVESDGRR---VLELVNWDPVLAVS 231
FR+ ES GRR V+EL+ W+P AVS
Sbjct: 62 DLFRIRNES-GRRSSMVVELMKWNPDFAVS 90
>Medtr7g107280.1 | plant organelle RNA recognition domain protein |
HC | chr7:43760664-43762324 | 20130731
Length = 420
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Query: 115 VSRFIQDHPLLFQTYRHSDGKMWLGF--TDLMEDLLAEEQCIMDSMEKDRVDKVRRLLMM 172
V RFI+ +P LF + H F TD + L ++EQ I E D V++ ++LMM
Sbjct: 84 VLRFIRRYPTLFHEFPHPRWNSLPCFRLTDTAQLLDSQEQSIYAVHENDIVERFSKVLMM 143
Query: 173 SARNRIALSKIHHCRTLFGIPHDF-RDRVAKYPGFFRVVVESDGRRVLELVNWDPVLAVS 231
+ + ++ + G+P F + + KYP F+ V +G + LV+W AVS
Sbjct: 144 MKSRTVPIQSLYPLKFDLGLPDAFEKTLIPKYPDKFQFVKAGNGVSAIRLVDWCDEFAVS 203
Query: 232 ALEREFVVDEDGA 244
AL++ + + A
Sbjct: 204 ALQKSNQCESENA 216
>Medtr4g053720.1 | plant organelle RNA recognition domain protein |
HC | chr4:19386178-19384121 | 20130731
Length = 357
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 11/168 (6%)
Query: 77 LRFVTKSKQFLSSQPEHVLRLDDAGKLHRELGFPRGRKVSRFIQDHPLLFQTYRHSDG-K 135
L+ V K + S P L L +A L L P + ++ + +F ++ S G
Sbjct: 40 LKHVISLKNHIVSSPSKSLSLYNASMLKASLNLPM--ITIKLVEKYHHVFMQFQPSPGLP 97
Query: 136 MWLGFTDLMEDLLAEEQCIMDS--MEKDRVDKVRRLLMMSARNRIALSKIHHCRTLFGIP 193
+ T L EE + +S ++D ++ RLLM++ R+ + I + G+P
Sbjct: 98 PRIKLTAQALALHKEEMEVHNSRTNQEDAAQRLARLLMLAGMARLPIYVIEKLKWDMGLP 157
Query: 194 HDF-RDRVAKYPGFFRVVVESD---GRRV--LELVNWDPVLAVSALER 235
HD+ +A YP +F V V D G+ V LELV+W L+VS LE+
Sbjct: 158 HDYVTTLLAYYPDYFDVCVVEDPLSGKEVLALELVSWRKELSVSELEK 205
>Medtr7g088530.1 | plant organelle RNA recognition domain protein |
HC | chr7:34489084-34490337 | 20130731
Length = 417
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 115 VSRFIQDHPLLFQTYRHSDGK-MWLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRRLLMMS 173
V+ F+Q +P +F + H + M T M++L+ E+ ++ E + V +V++LLMMS
Sbjct: 99 VTSFLQKYPHVFYLFVHPFRRNMCCRMTKKMKELILLEEVVVRQHEVEVVKRVKKLLMMS 158
Query: 174 ARNRIALSKIHHCRTLFGIPHDFRDRV-AKYPGFFRVVVESDGRRVLELVNWDPVLAVS 231
+ L + R G+P DFR+ + +Y FR+V ++ LV WD L ++
Sbjct: 159 VNGTLHLHALRLIRRELGLPCDFRESILGRYSDEFRLV----DLEIVALVGWDDELGMA 213
>Medtr2g067960.1 | plant organelle RNA recognition domain protein |
HC | chr2:28431693-28434356 | 20130731
Length = 431
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 7/146 (4%)
Query: 104 HRELGFPRGRKVSRFIQDHPLLFQTYRHSDGKMWLGFTDLMEDLLAEEQCIMDSMEKDR- 162
HR +GF R + S FI P +F+ + H ++ L E++ + + + R
Sbjct: 57 HR-IGFTR-HEASAFILKFPYVFEIFEHLVQRILFCRLTRKTILQIEQERLALADQVGRT 114
Query: 163 VDKVRRLLMMSARNRIALSKIHHCRTLFGIPHDFRDRVA-KYPGFFRVVVESDGR-RVLE 220
V +R+++MMS R+ L + R+ G+ DF V +YP FFR+V + R + +E
Sbjct: 115 VTCLRKMIMMSNGLRLRLEHVRIARSALGLRDDFEYLVVLRYPEFFRLVDAKETRNKYIE 174
Query: 221 LVNWDPVLAVSALE--REFVVDEDGA 244
LV +DP LA A+E RE V E G+
Sbjct: 175 LVEFDPKLATCAIEDARERVYRERGS 200
>Medtr6g043850.1 | plant organelle RNA recognition domain protein |
LC | chr6:15115306-15109090 | 20130731
Length = 664
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 72/126 (57%), Gaps = 8/126 (6%)
Query: 118 FIQDHPLLFQTYRHSDGKMW---LGFTDLMEDLLAEEQCIM--DSMEKDRVDKVRRLLMM 172
FI+ +P +F+ + +++G + + T DL A+E+ ++ D +KD +V +LLM+
Sbjct: 84 FIRKYPSVFEEF-YNNGCTFEPHVKLTAKAIDLNADEKFLVASDVFKKDVAVRVLKLLMI 142
Query: 173 SARNRIALSKIHHCRTLFGIPHDF-RDRVAKYPGFFRVVVESDGRRVLELVNWDPVLAVS 231
+ N+I LS + + G+P D+ + + ++P FRVV D VLELV W +VS
Sbjct: 143 AKGNKIPLSVVDGLKWDLGLPDDYVKSVIPEFPDHFRVVG-VDNNAVLELVCWSKKHSVS 201
Query: 232 ALEREF 237
LE+++
Sbjct: 202 FLEKKY 207
>Medtr7g009010.1 | plant organelle RNA recognition domain protein |
LC | chr7:1887874-1884516 | 20130731
Length = 142
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 140 FTDLMEDLLAEEQCIMDSMEKDRVDKVRRLLMMSARNRIALSKIHHCRTLFGIPHDFRDR 199
T M +L+ EEQ + DS+E V ++ +L M+S N + KI+ + G P D+ +
Sbjct: 56 LTKRMIELVHEEQSLKDSLESVFVQRLAKLFMLSLNNCLNAMKINEIKNSLGFPDDYLIQ 115
Query: 200 -VAKYPGFFRVVVESDGRR---VLELV 222
VAKYP FR+ ES GRR V+EL+
Sbjct: 116 IVAKYPDLFRIRNES-GRRSSTVVELM 141
>Medtr8g089370.2 | plant organelle RNA recognition domain protein |
HC | chr8:37138838-37141109 | 20130731
Length = 389
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 6/138 (4%)
Query: 104 HR-ELGFPRGRKVSRFIQDHPLLF-QTYRHSDGKM---WLGFTDLMEDLLAEEQCIMDSM 158
HR +LG P K++ FI+ +P +F ++Y G G + + EE I+
Sbjct: 79 HRGQLGLPDEIKLAVFIRRYPNVFVESYSLDSGGSPVPCFGLSSEAMKIHREEVDILREN 138
Query: 159 EKDRVDKVRRLLMMSARNRIALSKIHHCRTLFGIPHDFRDR-VAKYPGFFRVVVESDGRR 217
+ D++ +LLM++ + L I + G+P+D++D V +P F V D R
Sbjct: 139 SLEFRDRLCKLLMLTRDWMLPLQTIDQLKWDLGLPYDYQDSFVMNHPEKFSFVRLPDVRV 198
Query: 218 VLELVNWDPVLAVSALER 235
L+L+ WD LAVS LE+
Sbjct: 199 GLKLLFWDDKLAVSELEK 216
>Medtr8g089370.1 | plant organelle RNA recognition domain protein |
HC | chr8:37138838-37141109 | 20130731
Length = 389
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 6/138 (4%)
Query: 104 HR-ELGFPRGRKVSRFIQDHPLLF-QTYRHSDGKM---WLGFTDLMEDLLAEEQCIMDSM 158
HR +LG P K++ FI+ +P +F ++Y G G + + EE I+
Sbjct: 79 HRGQLGLPDEIKLAVFIRRYPNVFVESYSLDSGGSPVPCFGLSSEAMKIHREEVDILREN 138
Query: 159 EKDRVDKVRRLLMMSARNRIALSKIHHCRTLFGIPHDFRDR-VAKYPGFFRVVVESDGRR 217
+ D++ +LLM++ + L I + G+P+D++D V +P F V D R
Sbjct: 139 SLEFRDRLCKLLMLTRDWMLPLQTIDQLKWDLGLPYDYQDSFVMNHPEKFSFVRLPDVRV 198
Query: 218 VLELVNWDPVLAVSALER 235
L+L+ WD LAVS LE+
Sbjct: 199 GLKLLFWDDKLAVSELEK 216