Miyakogusa Predicted Gene

Lj0g3v0225769.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0225769.1 Non Characterized Hit- tr|D7U3Z2|D7U3Z2_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,32,0.000005,seg,NULL,CUFF.14696.1
         (172 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g005000.1 | PPR containing plant-like protein | HC | chr6:...   196   6e-51

>Medtr6g005000.1 | PPR containing plant-like protein | HC |
           chr6:556927-554990 | 20130731
          Length = 645

 Score =  196 bits (499), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 97/164 (59%), Positives = 115/164 (70%), Gaps = 1/164 (0%)

Query: 5   PSISATTVPILSESFSNTTXXXXXXXXXXXXXXXXLVTIHDSQSKPISSPFYNLLPPTQN 64
           P++   T P +S S  + +                L+ +HDS S PISSPFYNLLPPT N
Sbjct: 11  PAMKGFTFPRISNSIYSLSDSIFTKYSSFSSSSSSLI-LHDSDSNPISSPFYNLLPPTHN 69

Query: 65  PHNIVNLISSLLKQKSFHLSLFQNDIKGILPHMGTHEISRVLLRCQSDHSSALTFFNWVK 124
           P+NIVNLIS+ LKQKSFHLS FQ   K ILPH+G HEISRVL+R QSD SSALTFFNWVK
Sbjct: 70  PNNIVNLISTALKQKSFHLSHFQTQFKTILPHLGAHEISRVLIRTQSDASSALTFFNWVK 129

Query: 125 NDLGVKPAVQNYCVIVHILAWSRVFSKAMKLLCELIHLVEVEGV 168
           NDL    ++QNYC+IVHIL W+++F +AMKLLCELI L  V  V
Sbjct: 130 NDLRFTLSLQNYCLIVHILGWNQIFDQAMKLLCELIQLNNVNVV 173