Miyakogusa Predicted Gene
- Lj0g3v0225609.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0225609.1 Non Characterized Hit- tr|I3SB42|I3SB42_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.5,0,POLY-A
BINDING PROTEIN 2,NULL; RNA-binding domain, RBD,NULL;
coiled-coil,NULL; RRM,RNA recognition m,CUFF.14671.1
(200 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g094260.1 | polyadenylate-binding protein II | HC | chr4:3... 327 4e-90
Medtr8g089990.1 | polyadenylate-binding protein II | HC | chr8:3... 270 9e-73
Medtr1g073000.3 | polyadenylate-binding protein II | HC | chr1:3... 237 7e-63
Medtr1g073000.1 | polyadenylate-binding protein II | HC | chr1:3... 237 7e-63
Medtr1g073000.2 | polyadenylate-binding protein II | HC | chr1:3... 237 7e-63
Medtr1g069140.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 147 7e-36
Medtr1g069140.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 147 8e-36
Medtr1g049070.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 145 2e-35
Medtr3g028140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 77 8e-15
Medtr3g028140.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 8e-13
Medtr8g037000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 1e-12
Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 3e-10
Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 3e-10
Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 3e-10
Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 3e-10
Medtr1g036430.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 3e-09
Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 5e-07
Medtr5g079870.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 2e-06
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 49 2e-06
Medtr8g081640.3 | RNA recognition motif (RRM) containing protein... 49 2e-06
Medtr8g081640.2 | RNA recognition motif (RRM) containing protein... 49 2e-06
Medtr8g081640.1 | RNA recognition motif (RRM) containing protein... 49 2e-06
Medtr8g081640.4 | RNA recognition motif (RRM) containing protein... 49 2e-06
Medtr7g096260.1 | multiple RNA-binding domain protein | HC | chr... 49 2e-06
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 49 2e-06
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 49 2e-06
Medtr7g096260.2 | multiple RNA-binding domain protein | HC | chr... 49 2e-06
Medtr5g079870.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 3e-06
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c... 49 3e-06
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 48 5e-06
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 48 6e-06
Medtr7g013840.2 | ras GTPase-activating binding-like protein | H... 48 7e-06
>Medtr4g094260.1 | polyadenylate-binding protein II | HC |
chr4:37371600-37377016 | 20130731
Length = 199
Score = 327 bits (838), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 164/202 (81%), Positives = 173/202 (85%), Gaps = 5/202 (2%)
Query: 1 MENDDVDMVGXXXXXXXXXXLDDMKKRLKEMEDEAAALREMQAKVEKEMGSVPDPANASA 60
MENDDVDM+G LDDMKKRLKEMEDEAAAL+EMQAKVEKEMGSV DPANASA
Sbjct: 1 MENDDVDMIGADNNEAD---LDDMKKRLKEMEDEAAALKEMQAKVEKEMGSVQDPANASA 57
Query: 61 SQTNREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLE 120
SQ NREEVD+RS+FVGNVDY+CTPE+VQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEF+E
Sbjct: 58 SQINREEVDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVE 117
Query: 121 VEAVQEALALNESELHGRQLKVSGKRTNVPGMKQFRPRAP-NPYMGFRGRA-LXXXXXXX 178
VEAVQEAL LNESELHGRQLKV+ KRTNVPGMKQFRPR P NPYMGFRGR
Sbjct: 118 VEAVQEALLLNESELHGRQLKVTAKRTNVPGMKQFRPRRPSNPYMGFRGRTPYAPPFAYA 177
Query: 179 XXXYGYGKVPRFRMGMRYSPYY 200
YGYGK+PRFRMGMRYSPYY
Sbjct: 178 PAPYGYGKIPRFRMGMRYSPYY 199
>Medtr8g089990.1 | polyadenylate-binding protein II | HC |
chr8:37630582-37636333 | 20130731
Length = 216
Score = 270 bits (689), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 136/196 (69%), Positives = 152/196 (77%), Gaps = 1/196 (0%)
Query: 5 DVDMVGXXXXXXXXXXLDDMKKRLKEMEDEAAALREMQAKVEKEMGSVPDPANASASQTN 64
DVDM LD+M++RLKEME+EAAALREM AKVEKE+GSV DPA+ +ASQ N
Sbjct: 22 DVDMSAADDEAGGMKELDEMRRRLKEMEEEAAALREMHAKVEKEIGSVQDPASVAASQEN 81
Query: 65 REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAV 124
+EE D+RSVFVGNVDY+CTPEEVQQHFQSCGTVNRVTI TDKFGQPKG+AYVEF+E EAV
Sbjct: 82 KEEADARSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVETEAV 141
Query: 125 QEALALNESELHGRQLKVSGKRTNVPGMKQFRPRAPNPYMGFRGRALXXXXXXXXXXYGY 184
QEAL L+ESELHGRQLKV KRTNVPGMKQ+RPR NPYM + G YGY
Sbjct: 142 QEALLLSESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMAY-GFRRPYAPPYMYSPYGY 200
Query: 185 GKVPRFRMGMRYSPYY 200
GK PR+R RY PYY
Sbjct: 201 GKAPRYRRPNRYMPYY 216
>Medtr1g073000.3 | polyadenylate-binding protein II | HC |
chr1:32414624-32417752 | 20130731
Length = 187
Score = 237 bits (604), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 113/148 (76%), Positives = 130/148 (87%), Gaps = 4/148 (2%)
Query: 21 LDDMKKRLKEMEDEAAALREMQAKVEKEMGSVPDPANASASQTNREEVDSRSVFVGNVDY 80
L+DMKKRLKE+E+EA+ALREMQAKVEKEMG+V DPA +S SQ +EEVD+RS++VGNVDY
Sbjct: 44 LEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDPAGSSVSQAEKEEVDARSIYVGNVDY 103
Query: 81 SCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALALNESELHGRQL 140
+CTPEEVQQHFQSCGTVNRVTI TDKFGQPKG+AYVEF+E +AVQ AL LNE+ELHGRQL
Sbjct: 104 ACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEADAVQNALILNETELHGRQL 163
Query: 141 KVSGKRTNVPGMKQFRPRAPNPYMGFRG 168
KVS KRTNVPG+KQ+ R GFRG
Sbjct: 164 KVSAKRTNVPGLKQYGRRPA----GFRG 187
>Medtr1g073000.1 | polyadenylate-binding protein II | HC |
chr1:32414615-32419459 | 20130731
Length = 187
Score = 237 bits (604), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 113/148 (76%), Positives = 130/148 (87%), Gaps = 4/148 (2%)
Query: 21 LDDMKKRLKEMEDEAAALREMQAKVEKEMGSVPDPANASASQTNREEVDSRSVFVGNVDY 80
L+DMKKRLKE+E+EA+ALREMQAKVEKEMG+V DPA +S SQ +EEVD+RS++VGNVDY
Sbjct: 44 LEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDPAGSSVSQAEKEEVDARSIYVGNVDY 103
Query: 81 SCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALALNESELHGRQL 140
+CTPEEVQQHFQSCGTVNRVTI TDKFGQPKG+AYVEF+E +AVQ AL LNE+ELHGRQL
Sbjct: 104 ACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEADAVQNALILNETELHGRQL 163
Query: 141 KVSGKRTNVPGMKQFRPRAPNPYMGFRG 168
KVS KRTNVPG+KQ+ R GFRG
Sbjct: 164 KVSAKRTNVPGLKQYGRRPA----GFRG 187
>Medtr1g073000.2 | polyadenylate-binding protein II | HC |
chr1:32414624-32419295 | 20130731
Length = 187
Score = 237 bits (604), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 113/148 (76%), Positives = 130/148 (87%), Gaps = 4/148 (2%)
Query: 21 LDDMKKRLKEMEDEAAALREMQAKVEKEMGSVPDPANASASQTNREEVDSRSVFVGNVDY 80
L+DMKKRLKE+E+EA+ALREMQAKVEKEMG+V DPA +S SQ +EEVD+RS++VGNVDY
Sbjct: 44 LEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDPAGSSVSQAEKEEVDARSIYVGNVDY 103
Query: 81 SCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALALNESELHGRQL 140
+CTPEEVQQHFQSCGTVNRVTI TDKFGQPKG+AYVEF+E +AVQ AL LNE+ELHGRQL
Sbjct: 104 ACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEADAVQNALILNETELHGRQL 163
Query: 141 KVSGKRTNVPGMKQFRPRAPNPYMGFRG 168
KVS KRTNVPG+KQ+ R GFRG
Sbjct: 164 KVSAKRTNVPGLKQYGRRPA----GFRG 187
>Medtr1g069140.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:29710530-29713176 | 20130731
Length = 283
Score = 147 bits (371), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 79/154 (51%), Positives = 100/154 (64%), Gaps = 11/154 (7%)
Query: 23 DMKKRLKEMEDEAAALREMQAKVEKEMGSVPD-------PANASASQTNREEVDSRSVFV 75
D + R E ++A + A + +M S D PA +S E+ +RS+ V
Sbjct: 105 DPRTRFNYREKMSSADKYFNAGSQLQMSSWVDREDIVRGPAGSSVPHVANEDTYARSIHV 164
Query: 76 GNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALALNESEL 135
GNV Y+CTP+EVQQHFQSCGTVNRV I TDKFG+P+G+A VEF+E +AVQ AL LN SEL
Sbjct: 165 GNVHYACTPKEVQQHFQSCGTVNRVKILTDKFGRPEGFACVEFVEADAVQNALGLNGSEL 224
Query: 136 HGRQLKVSGKRTNVPGMKQFRPRAPNPYMGFRGR 169
HGR L VS K T+VP +KQ+R R + GFRGR
Sbjct: 225 HGRLLNVSSKCTHVPELKQYRRR----HAGFRGR 254
>Medtr1g069140.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:29709858-29712924 | 20130731
Length = 292
Score = 147 bits (370), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 79/154 (51%), Positives = 100/154 (64%), Gaps = 11/154 (7%)
Query: 23 DMKKRLKEMEDEAAALREMQAKVEKEMGSVPD-------PANASASQTNREEVDSRSVFV 75
D + R E ++A + A + +M S D PA +S E+ +RS+ V
Sbjct: 114 DPRTRFNYREKMSSADKYFNAGSQLQMSSWVDREDIVRGPAGSSVPHVANEDTYARSIHV 173
Query: 76 GNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALALNESEL 135
GNV Y+CTP+EVQQHFQSCGTVNRV I TDKFG+P+G+A VEF+E +AVQ AL LN SEL
Sbjct: 174 GNVHYACTPKEVQQHFQSCGTVNRVKILTDKFGRPEGFACVEFVEADAVQNALGLNGSEL 233
Query: 136 HGRQLKVSGKRTNVPGMKQFRPRAPNPYMGFRGR 169
HGR L VS K T+VP +KQ+R R + GFRGR
Sbjct: 234 HGRLLNVSSKCTHVPELKQYRRR----HAGFRGR 263
>Medtr1g049070.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr1:18949410-18945722 | 20130731
Length = 150
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/134 (55%), Positives = 91/134 (67%), Gaps = 7/134 (5%)
Query: 66 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQ 125
EEVD+RSV+VGNVDY+CT + V+QHFQSCG V+RVTI +++ PKG AYVEF ++AV
Sbjct: 24 EEVDARSVYVGNVDYACTAKVVKQHFQSCGIVSRVTILLNEYCLPKGCAYVEFQNIDAVP 83
Query: 126 EALALNESELHGRQLKVSGKRTNVPGMKQFRPRAPNPYMGFRGRALXXXXXXXXXXYGYG 185
+AL LNESEL+GR++KV KRTN+PGM Q R R N Y+ GYG
Sbjct: 84 KALLLNESELYGRKIKVCAKRTNIPGMNQHRGR--NTYV-----LRSRRPPPVYRRPGYG 136
Query: 186 KVPRFRMGMRYSPY 199
PRFR MRY PY
Sbjct: 137 SAPRFRRSMRYRPY 150
>Medtr3g028140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8902502-8910404 | 20130731
Length = 685
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 80/151 (52%), Gaps = 8/151 (5%)
Query: 21 LDDMKKRLKEMEDEAAALR------EMQAKVEKEMGSVPDPANASASQTNREEVDSRSVF 74
+ D + ++ +++ A AL+ + V+KE +S + E+VDSR++F
Sbjct: 455 IGDSRSNMQLVKENANALKISNGNVNLAPDVQKESSKAHCTPGSSVAGRPTEDVDSRTIF 514
Query: 75 VGNVDYSCTPEEVQQHFQSCGTVNRVTIRTD-KFGQPKGYAYVEFLEVEAVQEALALNES 133
V NV ++ T + + +HF G V +V I TD GQPKG AYVEF+ EA AL+L+ +
Sbjct: 515 VSNVHFAATKDALSRHFNKFGEVLKVIIVTDAATGQPKGAAYVEFMLKEAADNALSLDGT 574
Query: 134 ELHGRQLKVSGKRTNVPGMKQFRPRAPNPYM 164
R LKV K++ P ++ P P++
Sbjct: 575 SFMSRILKVV-KKSAAPAQQESAPTTTWPHV 604
>Medtr3g028140.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8902513-8908790 | 20130731
Length = 582
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 7/128 (5%)
Query: 21 LDDMKKRLKEMEDEAAALR------EMQAKVEKEMGSVPDPANASASQTNREEVDSRSVF 74
+ D + ++ +++ A AL+ + V+KE +S + E+VDSR++F
Sbjct: 455 IGDSRSNMQLVKENANALKISNGNVNLAPDVQKESSKAHCTPGSSVAGRPTEDVDSRTIF 514
Query: 75 VGNVDYSCTPEEVQQHFQSCGTVNRVTIRTD-KFGQPKGYAYVEFLEVEAVQEALALNES 133
V NV ++ T + + +HF G V +V I TD GQPKG AYVEF+ EA AL+L+ +
Sbjct: 515 VSNVHFAATKDALSRHFNKFGEVLKVIIVTDAATGQPKGAAYVEFMLKEAADNALSLDGT 574
Query: 134 ELHGRQLK 141
R LK
Sbjct: 575 SFMSRILK 582
>Medtr8g037000.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr8:13487363-13494759 | 20130731
Length = 815
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Query: 58 ASASQTNREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYV 116
+SA+ ++ DSR++F NV ++ T + + +HF G V + I TD G+PKG AYV
Sbjct: 625 SSAASCPLDDADSRTIFASNVHFAATKDAICRHFNKFGEVLKAVIVTDSITGKPKGAAYV 684
Query: 117 EFLEVEAVQEALALNESELHGRQLKVSGKRTNVPGMKQFRPRAPNPYMGFRG 168
EF+ EA AL+L+ + R LKV K T + + P P P G RG
Sbjct: 685 EFMYKEAADNALSLDGTSFMSRILKVVRKST--AQQEDYAPAVPWP-SGVRG 733
>Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 600
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 66 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQ 125
E S+++FVGN+ +S ++++ FQ CG V V +D+ G+ KG+ +VEF EA Q
Sbjct: 336 ENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQ 395
Query: 126 EALALNESELHGRQLKV 142
AL +N EL R +++
Sbjct: 396 SALEMNGQELLQRAVRL 412
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 6/79 (7%)
Query: 70 SRSVFVGNVDYSCTPEEVQ----QHFQ-SCGTVNRVTIRTD-KFGQPKGYAYVEFLEVEA 123
S++VFV D + +E++ +HF +CG RV+I D + G KG+AY++F + ++
Sbjct: 439 SQTVFVRGFDKNLGEDEIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDS 498
Query: 124 VQEALALNESELHGRQLKV 142
+AL L+ESEL G QL V
Sbjct: 499 FSKALELHESELDGYQLSV 517
>Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 588
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 66 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQ 125
E S+++FVGN+ +S ++++ FQ CG V V +D+ G+ KG+ +VEF EA Q
Sbjct: 324 ENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQ 383
Query: 126 EALALNESELHGRQLKV 142
AL +N EL R +++
Sbjct: 384 SALEMNGQELLQRAVRL 400
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 6/79 (7%)
Query: 70 SRSVFVGNVDYSCTPEEVQ----QHFQ-SCGTVNRVTIRTD-KFGQPKGYAYVEFLEVEA 123
S++VFV D + +E++ +HF +CG RV+I D + G KG+AY++F + ++
Sbjct: 427 SQTVFVRGFDKNLGEDEIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDS 486
Query: 124 VQEALALNESELHGRQLKV 142
+AL L+ESEL G QL V
Sbjct: 487 FSKALELHESELDGYQLSV 505
>Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 635
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 66 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQ 125
E S+++FVGN+ +S ++++ FQ CG V V +D+ G+ KG+ +VEF EA Q
Sbjct: 371 ENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQ 430
Query: 126 EALALNESELHGRQLKV 142
AL +N EL R +++
Sbjct: 431 SALEMNGQELLQRAVRL 447
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 6/79 (7%)
Query: 70 SRSVFVGNVDYSCTPEEVQ----QHFQ-SCGTVNRVTIRTD-KFGQPKGYAYVEFLEVEA 123
S++VFV D + +E++ +HF +CG RV+I D + G KG+AY++F + ++
Sbjct: 474 SQTVFVRGFDKNLGEDEIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDS 533
Query: 124 VQEALALNESELHGRQLKV 142
+AL L+ESEL G QL V
Sbjct: 534 FSKALELHESELDGYQLSV 552
>Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567463-28562229 | 20130731
Length = 623
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 66 EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQ 125
E S+++FVGN+ +S ++++ FQ CG V V +D+ G+ KG+ +VEF EA Q
Sbjct: 359 ENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQ 418
Query: 126 EALALNESELHGRQLKV 142
AL +N EL R +++
Sbjct: 419 SALEMNGQELLQRAVRL 435
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 6/79 (7%)
Query: 70 SRSVFVGNVDYSCTPEEVQ----QHFQ-SCGTVNRVTIRTD-KFGQPKGYAYVEFLEVEA 123
S++VFV D + +E++ +HF +CG RV+I D + G KG+AY++F + ++
Sbjct: 462 SQTVFVRGFDKNLGEDEIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDS 521
Query: 124 VQEALALNESELHGRQLKV 142
+AL L+ESEL G QL V
Sbjct: 522 FSKALELHESELDGYQLSV 540
>Medtr1g036430.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:13375682-13364027 | 20130731
Length = 668
Score = 58.9 bits (141), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 66/121 (54%)
Query: 22 DDMKKRLKEMEDEAAALREMQAKVEKEMGSVPDPANASASQTNREEVDSRSVFVGNVDYS 81
D + ++ D++ + + +VE+++ + + N ++ S+++ V N+ YS
Sbjct: 113 DSHRSSGEDNPDDSESPEYIGEEVEEKVSEAHQERHETPVTINEKDAPSKTICVRNLSYS 172
Query: 82 CTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALALNESELHGRQLK 141
+++ F+ CG V V TD+ G+ +G+ YVEF EA ++AL L+ +EL R+++
Sbjct: 173 VERTDMEDIFKDCGEVVDVRFNTDREGRFRGFGYVEFGTAEAAKKALKLDSTELLNRRMR 232
Query: 142 V 142
V
Sbjct: 233 V 233
Score = 53.5 bits (127), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 52/93 (55%)
Query: 50 GSVPDPANASASQTNREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQ 109
S+ + S + N V S++++V N+ Y+ +++ F+ CG + + + TD+ G+
Sbjct: 272 ASIVENKPKSPATPNETNVASKTIYVRNLSYTVERSDMENIFKDCGEIVDIRLHTDREGK 331
Query: 110 PKGYAYVEFLEVEAVQEALALNESELHGRQLKV 142
KG+A+V+F +A Q+AL N+ + R + V
Sbjct: 332 FKGHAHVQFATADAAQKALVFNKKVFYNRLMFV 364
>Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:52075123-52071412 | 20130731
Length = 490
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
Query: 73 VFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLEVEAVQEALALN 131
++VG++ + T EE+++ F +C V + + DK G+ +GYA+V+F + ++++ ALAL+
Sbjct: 314 IYVGSLSWEITEEELRKFFSNC-NVKAIRLGMDKETGEFRGYAHVDFGDSQSLKTALALD 372
Query: 132 ESELHGRQLKVS 143
+S L GR +++S
Sbjct: 373 QSVLFGRPVRIS 384
>Medtr5g079870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:34159814-34164480 | 20130731
Length = 286
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 67 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLEV-EAV 124
E ++ S+ V N+ C PEE++ F+ G V V I D + GQP+G+A+V+F++ EA
Sbjct: 43 ESNNGSLLVRNIPLDCRPEELRAPFERFGPVRDVYIPKDYYSGQPRGFAFVQFVDAYEAS 102
Query: 125 QEALALNESELHGRQLKV 142
+ ++ GR++ V
Sbjct: 103 EAQYHMDRQIFAGREISV 120
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 71 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTD-KFGQPKGYAYVEFLEVEAVQEALA 129
R ++VGN+ ++ T ++++ F+ GTV V + D + G KG+ +++F +E + A +
Sbjct: 317 RKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQS 376
Query: 130 LN-ESELHGRQLKVS 143
LN + E+ GR +KVS
Sbjct: 377 LNGKLEIAGRTIKVS 391
>Medtr8g081640.3 | RNA recognition motif (RRM) containing protein |
HC | chr8:35236572-35228497 | 20130731
Length = 1047
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 58 ASASQTNREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVE 117
S + N+E+V +++ V N+ T E+++Q F CGTV TI TD K +AY+E
Sbjct: 317 GSPDKANKEDVLKKTLQVSNLSPLLTVEQLKQLFGFCGTVVECTI-TDS----KHFAYIE 371
Query: 118 FLEVEAVQEALALNESELHGRQLKV 142
+ + E A+ALN ++ GR L V
Sbjct: 372 YSKPEEAAAAMALNNIDVGGRPLNV 396
>Medtr8g081640.2 | RNA recognition motif (RRM) containing protein |
HC | chr8:35236572-35228497 | 20130731
Length = 1047
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 58 ASASQTNREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVE 117
S + N+E+V +++ V N+ T E+++Q F CGTV TI TD K +AY+E
Sbjct: 317 GSPDKANKEDVLKKTLQVSNLSPLLTVEQLKQLFGFCGTVVECTI-TDS----KHFAYIE 371
Query: 118 FLEVEAVQEALALNESELHGRQLKV 142
+ + E A+ALN ++ GR L V
Sbjct: 372 YSKPEEAAAAMALNNIDVGGRPLNV 396
>Medtr8g081640.1 | RNA recognition motif (RRM) containing protein |
HC | chr8:35236572-35228497 | 20130731
Length = 1047
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 58 ASASQTNREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVE 117
S + N+E+V +++ V N+ T E+++Q F CGTV TI TD K +AY+E
Sbjct: 317 GSPDKANKEDVLKKTLQVSNLSPLLTVEQLKQLFGFCGTVVECTI-TDS----KHFAYIE 371
Query: 118 FLEVEAVQEALALNESELHGRQLKV 142
+ + E A+ALN ++ GR L V
Sbjct: 372 YSKPEEAAAAMALNNIDVGGRPLNV 396
>Medtr8g081640.4 | RNA recognition motif (RRM) containing protein |
HC | chr8:35236578-35228497 | 20130731
Length = 1047
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 58 ASASQTNREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVE 117
S + N+E+V +++ V N+ T E+++Q F CGTV TI TD K +AY+E
Sbjct: 317 GSPDKANKEDVLKKTLQVSNLSPLLTVEQLKQLFGFCGTVVECTI-TDS----KHFAYIE 371
Query: 118 FLEVEAVQEALALNESELHGRQLKV 142
+ + E A+ALN ++ GR L V
Sbjct: 372 YSKPEEAAAAMALNNIDVGGRPLNV 396
>Medtr7g096260.1 | multiple RNA-binding domain protein | HC |
chr7:38601352-38612085 | 20130731
Length = 709
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 70 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEAL- 128
S + V NV + T ++++Q F G + ++ + KFG +G+A+VE++ + Q AL
Sbjct: 585 STKLLVRNVAFEATKKDLRQLFSPFGQIKKLKLPM-KFGNHRGFAFVEYVTQQEAQNALT 643
Query: 129 ALNESELHGRQLKVSGKRTNVPGMKQFRPRAP---NPYMGFRGRAL 171
AL+ + L+GR L + + +K+ R R N + GF+ L
Sbjct: 644 ALSSTHLYGRHLVIERAKEG-ESLKELRARTAAQFNEHSGFQDTNL 688
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 71 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTD-KFGQPKGYAYVEFLEVEAVQEALA 129
R ++VGN+ ++ T ++++ F+ GTV V + D + G KG+ +++F +E + A +
Sbjct: 317 RKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQS 376
Query: 130 LN-ESELHGRQLKVS 143
LN + E+ GR +KVS
Sbjct: 377 LNGKLEIAGRTIKVS 391
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 71 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTD-KFGQPKGYAYVEFLEVEAVQEALA 129
R ++VGN+ ++ T ++++ F+ GTV V + D + G KG+ +++F +E + A +
Sbjct: 317 RKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQS 376
Query: 130 LN-ESELHGRQLKVS 143
LN + E+ GR +KVS
Sbjct: 377 LNGKLEIAGRTIKVS 391
>Medtr7g096260.2 | multiple RNA-binding domain protein | HC |
chr7:38600263-38612243 | 20130731
Length = 723
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 70 SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEAL- 128
S + V NV + T ++++Q F G + ++ + KFG +G+A+VE++ + Q AL
Sbjct: 599 STKLLVRNVAFEATKKDLRQLFSPFGQIKKLKLPM-KFGNHRGFAFVEYVTQQEAQNALT 657
Query: 129 ALNESELHGRQLKVSGKRTNVPGMKQFRPRAP---NPYMGFRGRAL 171
AL+ + L+GR L + + +K+ R R N + GF+ L
Sbjct: 658 ALSSTHLYGRHLVIERAKEG-ESLKELRARTAAQFNEHSGFQDTNL 702
>Medtr5g079870.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:34159851-34164480 | 20130731
Length = 249
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 67 EVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLEV-EAV 124
E ++ S+ V N+ C PEE++ F+ G V V I D + GQP+G+A+V+F++ EA
Sbjct: 43 ESNNGSLLVRNIPLDCRPEELRAPFERFGPVRDVYIPKDYYSGQPRGFAFVQFVDAYEAS 102
Query: 125 QEALALNESELHGRQLKV 142
+ ++ GR++ V
Sbjct: 103 EAQYHMDRQIFAGREISV 120
>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
chr1:43879642-43873268 | 20130731
Length = 572
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 71 RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLEVE-AVQEAL 128
R+VFVGN+ Y T E++++ + G V + TD+ G+PKGY + E+ + E A+
Sbjct: 29 RTVFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEETALSARR 88
Query: 129 ALNESELHGRQLKV 142
L E++GRQL+V
Sbjct: 89 NLQGYEINGRQLRV 102
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 28/181 (15%)
Query: 29 KEMEDEAAALREMQAKVEKEMGSV---PDPANASASQTNREEVDSRSVFVGNVDYSCTPE 85
+ +E + A R+ Q + ++ GSV P P ++ +FVG + + T
Sbjct: 73 RTVEAKKAVPRDDQQNINRQTGSVQGSPGPGR------------TKKIFVGGLPSTITES 120
Query: 86 EVQQHFQSCGTVNRVTIRTDKFGQ-PKGYAYVEFLEVEAVQEALALNESELHGRQLKVSG 144
+ + +F GT+ V + D Q P+G+ ++ + EAV L EL+G+ ++V
Sbjct: 121 DFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEV-- 178
Query: 145 KRTNVPGMKQFRPRAP-NPYMGFRGRALXXXXXXXXXXYGYG----KVPRF--RMGMRYS 197
KR VP K+ P +P +G+ +L YG G + F RM R+S
Sbjct: 179 KRA-VP--KELSPGPTRSPLIGYNNYSLNSRASSYLNNYGQGYSMSPIGGFGVRMDGRFS 235
Query: 198 P 198
P
Sbjct: 236 P 236
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 28/181 (15%)
Query: 29 KEMEDEAAALREMQAKVEKEMGSV---PDPANASASQTNREEVDSRSVFVGNVDYSCTPE 85
+ +E + A R+ Q + ++ GSV P P ++ +FVG + + T
Sbjct: 73 RTVEAKKAVPRDDQQNINRQTGSVQGSPGPGR------------TKKIFVGGLPSTITES 120
Query: 86 EVQQHFQSCGTVNRVTIRTDKFGQ-PKGYAYVEFLEVEAVQEALALNESELHGRQLKVSG 144
+ + +F GT+ V + D Q P+G+ ++ + EAV L EL+G+ ++V
Sbjct: 121 DFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEV-- 178
Query: 145 KRTNVPGMKQFRPRAP-NPYMGFRGRALXXXXXXXXXXYGYG----KVPRF--RMGMRYS 197
KR VP K+ P +P +G+ +L YG G + F RM R+S
Sbjct: 179 KRA-VP--KELSPGPTRSPLIGYNNYSLNSRASSYLNNYGQGYSMSPIGGFGVRMDGRFS 235
Query: 198 P 198
P
Sbjct: 236 P 236
>Medtr7g013840.2 | ras GTPase-activating binding-like protein | HC |
chr7:4087004-4079699 | 20130731
Length = 475
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 8/129 (6%)
Query: 48 EMGSVPD--PANASASQTN--REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIR 103
E +VPD P N ++N EEV+ S+++ N+ + T +++ FQ G + I+
Sbjct: 284 EPAAVPDAAPDNVGNPESNDSNEEVEGHSIYIRNLPLNVTVAQLETEFQKFGPIKPGCIQ 343
Query: 104 TDKFGQPKGYAYVEFLEVEAVQEALALNESELHGRQLKVSGKRTNV----PGMKQFRPRA 159
Q + +VE+L V ++ A+ + + GRQ V KRT RPR
Sbjct: 344 VRNNKQGYCFGFVEYLSVNSMNNAIQASPIPIGGRQAVVEIKRTTARVGGGSGGIGRPRF 403
Query: 160 PNPYMGFRG 168
P+ G+R
Sbjct: 404 PSGRSGYRN 412