Miyakogusa Predicted Gene

Lj0g3v0224699.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0224699.1 Non Characterized Hit- tr|I1NKT9|I1NKT9_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,38.97,0.000000000002, ,CUFF.14637.1
         (153 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g010290.1 | enhancer of polycomb-like transcription factor...   164   2e-41

>Medtr1g010290.1 | enhancer of polycomb-like transcription factor
            protein | HC | chr1:1894865-1888016 | 20130731
          Length = 1660

 Score =  164 bits (416), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 87/160 (54%), Positives = 111/160 (69%), Gaps = 10/160 (6%)

Query: 1    MRYYSASNDGYYRNHNPKSHRSKSKKFGSYMYQNVAQTTAYN-QRMSLSGKRNGVTRWNM 59
            M+YYS SND YYRNH  K HRSKSKK GS+MY N +Q +  N QRM +S KRNGV    M
Sbjct: 1504 MKYYSMSNDAYYRNHMQKLHRSKSKKHGSFMYNNGSQPSGSNSQRMPVSEKRNGV---RM 1560

Query: 60   GDYDLPGHRQYLLDGPQRHGIEQMDGSDH------DEFKLRDASGAAQHARKMAQLKRQR 113
             ++DLPGHRQY  D PQ+HG+EQ+DGSD       +EF+LR+A  A+   R  A+ KR R
Sbjct: 1561 INHDLPGHRQYAPDCPQKHGVEQLDGSDCVPQQLDEEFRLREAQNASLRVRNTAKFKRHR 1620

Query: 114  AQRLHYRADLAIHKAVVALMAAEAMKGSEDSVGDSSTTST 153
            A  LH  A++AIH+A+VALM A+A+K S + VG  S T++
Sbjct: 1621 ANNLHSMAEVAIHRAMVALMTADAIKASNEVVGGGSKTNS 1660