Miyakogusa Predicted Gene

Lj0g3v0224229.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0224229.1 tr|Q01B01|Q01B01_OSTTA WGS project CAID00000000
data, contig chromosome 04 OS=Ostreococcus tauri
GN=,35.96,2e-16,seg,NULL,CUFF.14590.1
         (254 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g070680.1 | transmembrane protein, putative | HC | chr8:29...   272   2e-73

>Medtr8g070680.1 | transmembrane protein, putative | HC |
           chr8:29862181-29855386 | 20130731
          Length = 267

 Score =  272 bits (695), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 152/238 (63%), Positives = 170/238 (71%), Gaps = 15/238 (6%)

Query: 32  HHTHSLFGNGASFTKLR--HRRT-STILSVGKEDTDLRVSVXXXXXXXXXXXXXXY---- 84
            ++HSLF NG SFTKL   HRR  S + S G ED DL VS                    
Sbjct: 30  RYSHSLFTNGTSFTKLSTTHRRILSFVPSAGNEDADLSVSSTQQLDDDDVVDDDEEEEEP 89

Query: 85  -------VAQIKRVLELLKKNRDMLFGEVKLTITIEDPRDIERRRLLGIDETDGPTREDL 137
                  VA+IKRVLELLK+NRDMLFGEVKLTI IEDPRD+ER+RLLGI++ D PTREDL
Sbjct: 90  TPQDLENVAEIKRVLELLKRNRDMLFGEVKLTIMIEDPRDVERKRLLGIEDLDAPTREDL 149

Query: 138 VVALEEVNEGKIPKDKLALQMLAEELATWPNLEAE-APKTKPSKSLYAKATDTGIDPQLA 196
           V ALEEVNEGKIPKDK  LQMLAEE+  WPNLEAE +PK KP KSLYAK TDTGIDPQ+A
Sbjct: 150 VAALEEVNEGKIPKDKAVLQMLAEEMTAWPNLEAELSPKKKPKKSLYAKTTDTGIDPQVA 209

Query: 197 AKKLNVDWDSAAXXXXXXXXXXXXXPPAVGYGALYLVTAFPIIIGVSVVLILFYNSLQ 254
           AK+LN+DWDSAA             P  +GYGALYLV+AFP+IIG+SVVLILFYNSLQ
Sbjct: 210 AKRLNIDWDSAAEIEEAKTDDETEVPSVLGYGALYLVSAFPVIIGISVVLILFYNSLQ 267