Miyakogusa Predicted Gene

Lj0g3v0224049.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0224049.1 Non Characterized Hit- tr|I3T3F4|I3T3F4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,43.59,0.23,seg,NULL,CUFF.14575.1
         (60 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g465890.1 | PPR containing plant protein | HC | chr8:23498...    50   4e-07
Medtr8g465890.2 | PPR containing plant protein | HC | chr8:23498...    50   4e-07

>Medtr8g465890.1 | PPR containing plant protein | HC |
          chr8:23498318-23503190 | 20130731
          Length = 492

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 21/29 (72%), Positives = 26/29 (89%)

Query: 32 ISRSGDRAIPMTPLLNQWLQEGKLINYSE 60
          ISR+GD  IPMTP+LNQW+QEG+ IN+SE
Sbjct: 33 ISRAGDPIIPMTPILNQWIQEGRDINHSE 61


>Medtr8g465890.2 | PPR containing plant protein | HC |
          chr8:23498212-23503209 | 20130731
          Length = 492

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 21/29 (72%), Positives = 26/29 (89%)

Query: 32 ISRSGDRAIPMTPLLNQWLQEGKLINYSE 60
          ISR+GD  IPMTP+LNQW+QEG+ IN+SE
Sbjct: 33 ISRAGDPIIPMTPILNQWIQEGRDINHSE 61