Miyakogusa Predicted Gene

Lj0g3v0223199.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0223199.3 tr|A4RUK5|A4RUK5_OSTLU Predicted protein
OS=Ostreococcus lucimarinus (strain CCE9901)
GN=OSTLU_30653,34.48,2e-18,Pseudouridine synthase,Pseudouridine
synthase, catalytic domain; SUBFAMILY NOT NAMED,NULL; RNA
PSEUD,CUFF.15297.3
         (289 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g022770.3 | RNA pseudouridine synthase | HC | chr2:7928768...   392   e-109
Medtr2g022770.1 | RNA pseudouridine synthase | HC | chr2:7928768...   392   e-109
Medtr2g022770.2 | RNA pseudouridine synthase | HC | chr2:7928768...   392   e-109
Medtr2g022770.4 | RNA pseudouridine synthase | HC | chr2:7928768...   392   e-109
Medtr7g113450.2 | RNA pseudouridine synthase | HC | chr7:4673192...   348   5e-96
Medtr7g113450.1 | RNA pseudouridine synthase | HC | chr7:4673192...   347   5e-96

>Medtr2g022770.3 | RNA pseudouridine synthase | HC |
           chr2:7928768-7924511 | 20130731
          Length = 473

 Score =  392 bits (1008), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/265 (73%), Positives = 213/265 (80%), Gaps = 2/265 (0%)

Query: 1   MLFSGGCRSFTAPAVSRALRNSLTKHLNKHALXXXXXXXXXXXNAALAGETESSTTDAGN 60
           MLF+G CR+   PA +RA+  SLTKHL  HA             A +AGETESSTTDA N
Sbjct: 9   MLFAGSCRTLAVPAAARAIPISLTKHLTNHAFRLRCRSSHNSFTA-IAGETESSTTDAVN 67

Query: 61  LXXXXXXXXXXXXXDRLLPCPLHKSPPRIEHLVVSEGGPVLEYICRSLDLHPLFVEDLIQ 120
           L             DRLLPCP HKSPPRIEHLVV+E GPVLEYIC++L+L  LFV DLIQ
Sbjct: 68  LTVTSSSNSYPKY-DRLLPCPTHKSPPRIEHLVVTEEGPVLEYICKALNLPHLFVADLIQ 126

Query: 121 FGAVYYALVCPHPPPNATPEQLRIFKEVTEPSVLRKRPSIKGKTFREAQKTFRITHANQF 180
           FGAVY+ALVCP PPPNAT EQ+R+FKEVTEP V+RKR S+KGKT REAQKTFR+T  +QF
Sbjct: 127 FGAVYFALVCPKPPPNATEEQIRVFKEVTEPLVVRKRASVKGKTIREAQKTFRVTDVDQF 186

Query: 181 VEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVAESYVVLDKPAGTSVGGTTDNIEESCVTF 240
           VEPGTYLRVHVHPKRFPR YEIDWRSRIIAV ESYVVLDKPAGTSVGGTTDNIEESC TF
Sbjct: 187 VEPGTYLRVHVHPKRFPRSYEIDWRSRIIAVKESYVVLDKPAGTSVGGTTDNIEESCATF 246

Query: 241 ATRALGLTTPLLTTHQIDNCTEGCL 265
           ATRALGLTTPL+TTHQIDNCTEGC+
Sbjct: 247 ATRALGLTTPLMTTHQIDNCTEGCV 271


>Medtr2g022770.1 | RNA pseudouridine synthase | HC |
           chr2:7928768-7924511 | 20130731
          Length = 473

 Score =  392 bits (1008), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/265 (73%), Positives = 213/265 (80%), Gaps = 2/265 (0%)

Query: 1   MLFSGGCRSFTAPAVSRALRNSLTKHLNKHALXXXXXXXXXXXNAALAGETESSTTDAGN 60
           MLF+G CR+   PA +RA+  SLTKHL  HA             A +AGETESSTTDA N
Sbjct: 9   MLFAGSCRTLAVPAAARAIPISLTKHLTNHAFRLRCRSSHNSFTA-IAGETESSTTDAVN 67

Query: 61  LXXXXXXXXXXXXXDRLLPCPLHKSPPRIEHLVVSEGGPVLEYICRSLDLHPLFVEDLIQ 120
           L             DRLLPCP HKSPPRIEHLVV+E GPVLEYIC++L+L  LFV DLIQ
Sbjct: 68  LTVTSSSNSYPKY-DRLLPCPTHKSPPRIEHLVVTEEGPVLEYICKALNLPHLFVADLIQ 126

Query: 121 FGAVYYALVCPHPPPNATPEQLRIFKEVTEPSVLRKRPSIKGKTFREAQKTFRITHANQF 180
           FGAVY+ALVCP PPPNAT EQ+R+FKEVTEP V+RKR S+KGKT REAQKTFR+T  +QF
Sbjct: 127 FGAVYFALVCPKPPPNATEEQIRVFKEVTEPLVVRKRASVKGKTIREAQKTFRVTDVDQF 186

Query: 181 VEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVAESYVVLDKPAGTSVGGTTDNIEESCVTF 240
           VEPGTYLRVHVHPKRFPR YEIDWRSRIIAV ESYVVLDKPAGTSVGGTTDNIEESC TF
Sbjct: 187 VEPGTYLRVHVHPKRFPRSYEIDWRSRIIAVKESYVVLDKPAGTSVGGTTDNIEESCATF 246

Query: 241 ATRALGLTTPLLTTHQIDNCTEGCL 265
           ATRALGLTTPL+TTHQIDNCTEGC+
Sbjct: 247 ATRALGLTTPLMTTHQIDNCTEGCV 271


>Medtr2g022770.2 | RNA pseudouridine synthase | HC |
           chr2:7928768-7924511 | 20130731
          Length = 473

 Score =  392 bits (1008), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/265 (73%), Positives = 213/265 (80%), Gaps = 2/265 (0%)

Query: 1   MLFSGGCRSFTAPAVSRALRNSLTKHLNKHALXXXXXXXXXXXNAALAGETESSTTDAGN 60
           MLF+G CR+   PA +RA+  SLTKHL  HA             A +AGETESSTTDA N
Sbjct: 9   MLFAGSCRTLAVPAAARAIPISLTKHLTNHAFRLRCRSSHNSFTA-IAGETESSTTDAVN 67

Query: 61  LXXXXXXXXXXXXXDRLLPCPLHKSPPRIEHLVVSEGGPVLEYICRSLDLHPLFVEDLIQ 120
           L             DRLLPCP HKSPPRIEHLVV+E GPVLEYIC++L+L  LFV DLIQ
Sbjct: 68  LTVTSSSNSYPKY-DRLLPCPTHKSPPRIEHLVVTEEGPVLEYICKALNLPHLFVADLIQ 126

Query: 121 FGAVYYALVCPHPPPNATPEQLRIFKEVTEPSVLRKRPSIKGKTFREAQKTFRITHANQF 180
           FGAVY+ALVCP PPPNAT EQ+R+FKEVTEP V+RKR S+KGKT REAQKTFR+T  +QF
Sbjct: 127 FGAVYFALVCPKPPPNATEEQIRVFKEVTEPLVVRKRASVKGKTIREAQKTFRVTDVDQF 186

Query: 181 VEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVAESYVVLDKPAGTSVGGTTDNIEESCVTF 240
           VEPGTYLRVHVHPKRFPR YEIDWRSRIIAV ESYVVLDKPAGTSVGGTTDNIEESC TF
Sbjct: 187 VEPGTYLRVHVHPKRFPRSYEIDWRSRIIAVKESYVVLDKPAGTSVGGTTDNIEESCATF 246

Query: 241 ATRALGLTTPLLTTHQIDNCTEGCL 265
           ATRALGLTTPL+TTHQIDNCTEGC+
Sbjct: 247 ATRALGLTTPLMTTHQIDNCTEGCV 271


>Medtr2g022770.4 | RNA pseudouridine synthase | HC |
           chr2:7928768-7924511 | 20130731
          Length = 473

 Score =  392 bits (1008), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/265 (73%), Positives = 213/265 (80%), Gaps = 2/265 (0%)

Query: 1   MLFSGGCRSFTAPAVSRALRNSLTKHLNKHALXXXXXXXXXXXNAALAGETESSTTDAGN 60
           MLF+G CR+   PA +RA+  SLTKHL  HA             A +AGETESSTTDA N
Sbjct: 9   MLFAGSCRTLAVPAAARAIPISLTKHLTNHAFRLRCRSSHNSFTA-IAGETESSTTDAVN 67

Query: 61  LXXXXXXXXXXXXXDRLLPCPLHKSPPRIEHLVVSEGGPVLEYICRSLDLHPLFVEDLIQ 120
           L             DRLLPCP HKSPPRIEHLVV+E GPVLEYIC++L+L  LFV DLIQ
Sbjct: 68  LTVTSSSNSYPKY-DRLLPCPTHKSPPRIEHLVVTEEGPVLEYICKALNLPHLFVADLIQ 126

Query: 121 FGAVYYALVCPHPPPNATPEQLRIFKEVTEPSVLRKRPSIKGKTFREAQKTFRITHANQF 180
           FGAVY+ALVCP PPPNAT EQ+R+FKEVTEP V+RKR S+KGKT REAQKTFR+T  +QF
Sbjct: 127 FGAVYFALVCPKPPPNATEEQIRVFKEVTEPLVVRKRASVKGKTIREAQKTFRVTDVDQF 186

Query: 181 VEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVAESYVVLDKPAGTSVGGTTDNIEESCVTF 240
           VEPGTYLRVHVHPKRFPR YEIDWRSRIIAV ESYVVLDKPAGTSVGGTTDNIEESC TF
Sbjct: 187 VEPGTYLRVHVHPKRFPRSYEIDWRSRIIAVKESYVVLDKPAGTSVGGTTDNIEESCATF 246

Query: 241 ATRALGLTTPLLTTHQIDNCTEGCL 265
           ATRALGLTTPL+TTHQIDNCTEGC+
Sbjct: 247 ATRALGLTTPLMTTHQIDNCTEGCV 271


>Medtr7g113450.2 | RNA pseudouridine synthase | HC |
           chr7:46731924-46729842 | 20130731
          Length = 323

 Score =  348 bits (892), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 177/265 (66%), Positives = 197/265 (74%), Gaps = 20/265 (7%)

Query: 1   MLFSGGCRSFTAPAVSRALRNSLTKHLNKHALXXXXXXXXXXXNAALAGETESSTTDAGN 60
           MLF+G  R    P  + A+  S+ KHLNKH                  G     + D+  
Sbjct: 7   MLFAGSSRILGVPDTASAVPISVNKHLNKHEF----------------GWCCRISNDSNA 50

Query: 61  LXXXXXXXXXXXXXDRLLPCPLHKSPPRIEHLVVSEGGPVLEYICRSLDLHPLFVEDLIQ 120
           +             DRLLPCP HK PPRIEHLVVS+ GPVL+YIC++LDL  LFV DLIQ
Sbjct: 51  ISETVTYPKY----DRLLPCPSHKIPPRIEHLVVSQEGPVLQYICKALDLPHLFVADLIQ 106

Query: 121 FGAVYYALVCPHPPPNATPEQLRIFKEVTEPSVLRKRPSIKGKTFREAQKTFRITHANQF 180
           FGAVY+ALV P PPP AT EQ+RIF++VTEP VL+KR S+KGKT REAQKTFR+T ANQF
Sbjct: 107 FGAVYFALVSPEPPPTATAEQIRIFEQVTEPLVLQKRSSLKGKTIREAQKTFRVTDANQF 166

Query: 181 VEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVAESYVVLDKPAGTSVGGTTDNIEESCVTF 240
           VEPGTYLRVHVHPKRFPRCYEIDWRSRIIAV ESYVVLDKPAGTSVG TT NIEESCVTF
Sbjct: 167 VEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGETTGNIEESCVTF 226

Query: 241 ATRALGLTTPLLTTHQIDNCTEGCL 265
           ATRALGLTTPL+TTHQIDNCTEGC+
Sbjct: 227 ATRALGLTTPLITTHQIDNCTEGCV 251


>Medtr7g113450.1 | RNA pseudouridine synthase | HC |
           chr7:46731924-46728028 | 20130731
          Length = 450

 Score =  347 bits (891), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 177/265 (66%), Positives = 197/265 (74%), Gaps = 20/265 (7%)

Query: 1   MLFSGGCRSFTAPAVSRALRNSLTKHLNKHALXXXXXXXXXXXNAALAGETESSTTDAGN 60
           MLF+G  R    P  + A+  S+ KHLNKH                  G     + D+  
Sbjct: 7   MLFAGSSRILGVPDTASAVPISVNKHLNKHEF----------------GWCCRISNDSNA 50

Query: 61  LXXXXXXXXXXXXXDRLLPCPLHKSPPRIEHLVVSEGGPVLEYICRSLDLHPLFVEDLIQ 120
           +             DRLLPCP HK PPRIEHLVVS+ GPVL+YIC++LDL  LFV DLIQ
Sbjct: 51  ISETVTYPKY----DRLLPCPSHKIPPRIEHLVVSQEGPVLQYICKALDLPHLFVADLIQ 106

Query: 121 FGAVYYALVCPHPPPNATPEQLRIFKEVTEPSVLRKRPSIKGKTFREAQKTFRITHANQF 180
           FGAVY+ALV P PPP AT EQ+RIF++VTEP VL+KR S+KGKT REAQKTFR+T ANQF
Sbjct: 107 FGAVYFALVSPEPPPTATAEQIRIFEQVTEPLVLQKRSSLKGKTIREAQKTFRVTDANQF 166

Query: 181 VEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVAESYVVLDKPAGTSVGGTTDNIEESCVTF 240
           VEPGTYLRVHVHPKRFPRCYEIDWRSRIIAV ESYVVLDKPAGTSVG TT NIEESCVTF
Sbjct: 167 VEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGETTGNIEESCVTF 226

Query: 241 ATRALGLTTPLLTTHQIDNCTEGCL 265
           ATRALGLTTPL+TTHQIDNCTEGC+
Sbjct: 227 ATRALGLTTPLITTHQIDNCTEGCV 251