Miyakogusa Predicted Gene
- Lj0g3v0223199.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0223199.1 Non Characterized Hit- tr|E1Z2G6|E1Z2G6_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,37.5,0.0000000002,SUBFAMILY NOT NAMED,NULL; RNA
PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN,NULL; Pseudouridine
synthase,P,CUFF.15297.1
(161 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g022770.3 | RNA pseudouridine synthase | HC | chr2:7928768... 304 2e-83
Medtr2g022770.1 | RNA pseudouridine synthase | HC | chr2:7928768... 304 2e-83
Medtr2g022770.2 | RNA pseudouridine synthase | HC | chr2:7928768... 304 2e-83
Medtr2g022770.4 | RNA pseudouridine synthase | HC | chr2:7928768... 304 2e-83
Medtr7g113450.1 | RNA pseudouridine synthase | HC | chr7:4673192... 274 3e-74
>Medtr2g022770.3 | RNA pseudouridine synthase | HC |
chr2:7928768-7924511 | 20130731
Length = 473
Score = 304 bits (779), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 134/161 (83%), Positives = 151/161 (93%)
Query: 1 MRPVNTAPRLISEDFIKGWHRCQLEVLECRKVPWPTTVIQDKYCVEDCGWPSQDHAYECI 60
MRP+N APRLISEDFIKGW CQLEV+ECRK+PWPT+V+QD+YCVEDCGWPSQD+AYEC
Sbjct: 313 MRPINMAPRLISEDFIKGWLLCQLEVIECRKIPWPTSVVQDEYCVEDCGWPSQDYAYECK 372
Query: 61 INLLTGKTHQIRAQFSACKAPLIGDSMYMPAAMAEISNPGLNPFGKYKKDFSIESEEEIA 120
INLLTG+THQIRAQF+ACKAPL+GD+MYMPAA+AE+ NPGLNPFGKYKKDF ESE+E A
Sbjct: 373 INLLTGRTHQIRAQFAACKAPLVGDTMYMPAAVAEMINPGLNPFGKYKKDFPSESEKEAA 432
Query: 121 VINWIAQHGKEPSVVIGLQACQISWDDKEHFYQAGSPWWRC 161
VINW+AQHGKEPSV IGLQACQISWDD EHF++AGSPWWRC
Sbjct: 433 VINWVAQHGKEPSVAIGLQACQISWDDDEHFHRAGSPWWRC 473
>Medtr2g022770.1 | RNA pseudouridine synthase | HC |
chr2:7928768-7924511 | 20130731
Length = 473
Score = 304 bits (779), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 134/161 (83%), Positives = 151/161 (93%)
Query: 1 MRPVNTAPRLISEDFIKGWHRCQLEVLECRKVPWPTTVIQDKYCVEDCGWPSQDHAYECI 60
MRP+N APRLISEDFIKGW CQLEV+ECRK+PWPT+V+QD+YCVEDCGWPSQD+AYEC
Sbjct: 313 MRPINMAPRLISEDFIKGWLLCQLEVIECRKIPWPTSVVQDEYCVEDCGWPSQDYAYECK 372
Query: 61 INLLTGKTHQIRAQFSACKAPLIGDSMYMPAAMAEISNPGLNPFGKYKKDFSIESEEEIA 120
INLLTG+THQIRAQF+ACKAPL+GD+MYMPAA+AE+ NPGLNPFGKYKKDF ESE+E A
Sbjct: 373 INLLTGRTHQIRAQFAACKAPLVGDTMYMPAAVAEMINPGLNPFGKYKKDFPSESEKEAA 432
Query: 121 VINWIAQHGKEPSVVIGLQACQISWDDKEHFYQAGSPWWRC 161
VINW+AQHGKEPSV IGLQACQISWDD EHF++AGSPWWRC
Sbjct: 433 VINWVAQHGKEPSVAIGLQACQISWDDDEHFHRAGSPWWRC 473
>Medtr2g022770.2 | RNA pseudouridine synthase | HC |
chr2:7928768-7924511 | 20130731
Length = 473
Score = 304 bits (779), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 134/161 (83%), Positives = 151/161 (93%)
Query: 1 MRPVNTAPRLISEDFIKGWHRCQLEVLECRKVPWPTTVIQDKYCVEDCGWPSQDHAYECI 60
MRP+N APRLISEDFIKGW CQLEV+ECRK+PWPT+V+QD+YCVEDCGWPSQD+AYEC
Sbjct: 313 MRPINMAPRLISEDFIKGWLLCQLEVIECRKIPWPTSVVQDEYCVEDCGWPSQDYAYECK 372
Query: 61 INLLTGKTHQIRAQFSACKAPLIGDSMYMPAAMAEISNPGLNPFGKYKKDFSIESEEEIA 120
INLLTG+THQIRAQF+ACKAPL+GD+MYMPAA+AE+ NPGLNPFGKYKKDF ESE+E A
Sbjct: 373 INLLTGRTHQIRAQFAACKAPLVGDTMYMPAAVAEMINPGLNPFGKYKKDFPSESEKEAA 432
Query: 121 VINWIAQHGKEPSVVIGLQACQISWDDKEHFYQAGSPWWRC 161
VINW+AQHGKEPSV IGLQACQISWDD EHF++AGSPWWRC
Sbjct: 433 VINWVAQHGKEPSVAIGLQACQISWDDDEHFHRAGSPWWRC 473
>Medtr2g022770.4 | RNA pseudouridine synthase | HC |
chr2:7928768-7924511 | 20130731
Length = 473
Score = 304 bits (779), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 134/161 (83%), Positives = 151/161 (93%)
Query: 1 MRPVNTAPRLISEDFIKGWHRCQLEVLECRKVPWPTTVIQDKYCVEDCGWPSQDHAYECI 60
MRP+N APRLISEDFIKGW CQLEV+ECRK+PWPT+V+QD+YCVEDCGWPSQD+AYEC
Sbjct: 313 MRPINMAPRLISEDFIKGWLLCQLEVIECRKIPWPTSVVQDEYCVEDCGWPSQDYAYECK 372
Query: 61 INLLTGKTHQIRAQFSACKAPLIGDSMYMPAAMAEISNPGLNPFGKYKKDFSIESEEEIA 120
INLLTG+THQIRAQF+ACKAPL+GD+MYMPAA+AE+ NPGLNPFGKYKKDF ESE+E A
Sbjct: 373 INLLTGRTHQIRAQFAACKAPLVGDTMYMPAAVAEMINPGLNPFGKYKKDFPSESEKEAA 432
Query: 121 VINWIAQHGKEPSVVIGLQACQISWDDKEHFYQAGSPWWRC 161
VINW+AQHGKEPSV IGLQACQISWDD EHF++AGSPWWRC
Sbjct: 433 VINWVAQHGKEPSVAIGLQACQISWDDDEHFHRAGSPWWRC 473
>Medtr7g113450.1 | RNA pseudouridine synthase | HC |
chr7:46731924-46728028 | 20130731
Length = 450
Score = 274 bits (701), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 125/159 (78%), Positives = 141/159 (88%), Gaps = 4/159 (2%)
Query: 1 MRPVNTAPRLISEDFIKGWHRCQLEVLECRKVPWPTTVIQDKYCVEDCGWPSQDHAYECI 60
MRP NTAPRLISED IKGWH CQLEV++CRK+PWP V+QD+YC GWPSQD+AYEC
Sbjct: 293 MRPTNTAPRLISEDCIKGWHICQLEVMDCRKIPWPAIVVQDEYC----GWPSQDYAYECK 348
Query: 61 INLLTGKTHQIRAQFSACKAPLIGDSMYMPAAMAEISNPGLNPFGKYKKDFSIESEEEIA 120
INLLTG+THQIRAQF+ACKAP+IGD+MYMPAA+AE+ NPGLNPFGKY KDFS ESE++ A
Sbjct: 349 INLLTGRTHQIRAQFAACKAPIIGDTMYMPAAIAEMINPGLNPFGKYNKDFSSESEKKTA 408
Query: 121 VINWIAQHGKEPSVVIGLQACQISWDDKEHFYQAGSPWW 159
VINWIAQHGKEPSV IGLQACQISWDD E+ Y+AG PWW
Sbjct: 409 VINWIAQHGKEPSVAIGLQACQISWDDDEYIYRAGLPWW 447