Miyakogusa Predicted Gene

Lj0g3v0221809.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0221809.1 Non Characterized Hit- tr|B9SFZ8|B9SFZ8_RICCO
Exonuclease, putative OS=Ricinus communis
GN=RCOM_1153,34.48,0.007,coiled-coil,NULL,CUFF.14396.1
         (125 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g023955.1 | small RNA degrading nuclease | HC | chr1:77333...    85   2e-17
Medtr1g023955.2 | small RNA degrading nuclease | HC | chr1:77335...    85   2e-17

>Medtr1g023955.1 | small RNA degrading nuclease | HC |
           chr1:7733337-7739883 | 20130731
          Length = 550

 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 65/97 (67%), Gaps = 12/97 (12%)

Query: 5   STGMTVSLFVRKMTADEPDNLLPSKRALQVDEADEAVNASKKAKTVPQIEEDALIGSTKG 64
           STGM+VSLFVRKM  D+    +PSKR L   E  + V  +KK K  P++E+DA       
Sbjct: 399 STGMSVSLFVRKMGIDDHHKKMPSKRDLPEGEMVD-VPENKKVKMDPEVEKDA------- 450

Query: 65  DTCTHLKGIEALNQQLKQKDLEIESLREQLRKRDFEV 101
               +LK IEALNQ+LK+ +LEIESLREQLRK+D +V
Sbjct: 451 ----YLKQIEALNQRLKESELEIESLREQLRKKDLQV 483


>Medtr1g023955.2 | small RNA degrading nuclease | HC |
           chr1:7733526-7739883 | 20130731
          Length = 550

 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 65/97 (67%), Gaps = 12/97 (12%)

Query: 5   STGMTVSLFVRKMTADEPDNLLPSKRALQVDEADEAVNASKKAKTVPQIEEDALIGSTKG 64
           STGM+VSLFVRKM  D+    +PSKR L   E  + V  +KK K  P++E+DA       
Sbjct: 399 STGMSVSLFVRKMGIDDHHKKMPSKRDLPEGEMVD-VPENKKVKMDPEVEKDA------- 450

Query: 65  DTCTHLKGIEALNQQLKQKDLEIESLREQLRKRDFEV 101
               +LK IEALNQ+LK+ +LEIESLREQLRK+D +V
Sbjct: 451 ----YLKQIEALNQRLKESELEIESLREQLRKKDLQV 483