Miyakogusa Predicted Gene

Lj0g3v0221799.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0221799.1 Non Characterized Hit- tr|B9SFZ8|B9SFZ8_RICCO
Exonuclease, putative OS=Ricinus communis GN=RCOM_1153,53.85,2e-19,
,CUFF.14394.1
         (95 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g023955.1 | small RNA degrading nuclease | HC | chr1:77333...   157   2e-39
Medtr1g023955.2 | small RNA degrading nuclease | HC | chr1:77335...   157   2e-39

>Medtr1g023955.1 | small RNA degrading nuclease | HC |
           chr1:7733337-7739883 | 20130731
          Length = 550

 Score =  157 bits (397), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 75/95 (78%), Positives = 84/95 (88%)

Query: 1   MKLVLARIKHGVDKEFPFTLVQEHVSESDMTKLLLHGIPTSVNIETLHKIVPGDFTIEVK 60
           MKLVLA+IKHGVDK FP TLVQE VSES+M+KLL+H IPT+VN E LH+IVPGDFTIE K
Sbjct: 290 MKLVLAKIKHGVDKPFPLTLVQEPVSESEMSKLLIHRIPTTVNTEALHEIVPGDFTIERK 349

Query: 61  PSRKGQRAKYSALATFKNQQEAYEAYENVQGSQTK 95
           PSR GQ  KYSALA FKNQ+EA++AYENVQGSQTK
Sbjct: 350 PSRNGQGDKYSALAIFKNQREAHDAYENVQGSQTK 384


>Medtr1g023955.2 | small RNA degrading nuclease | HC |
           chr1:7733526-7739883 | 20130731
          Length = 550

 Score =  157 bits (397), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 75/95 (78%), Positives = 84/95 (88%)

Query: 1   MKLVLARIKHGVDKEFPFTLVQEHVSESDMTKLLLHGIPTSVNIETLHKIVPGDFTIEVK 60
           MKLVLA+IKHGVDK FP TLVQE VSES+M+KLL+H IPT+VN E LH+IVPGDFTIE K
Sbjct: 290 MKLVLAKIKHGVDKPFPLTLVQEPVSESEMSKLLIHRIPTTVNTEALHEIVPGDFTIERK 349

Query: 61  PSRKGQRAKYSALATFKNQQEAYEAYENVQGSQTK 95
           PSR GQ  KYSALA FKNQ+EA++AYENVQGSQTK
Sbjct: 350 PSRNGQGDKYSALAIFKNQREAHDAYENVQGSQTK 384