Miyakogusa Predicted Gene

Lj0g3v0221779.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0221779.4 tr|B9HHB4|B9HHB4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_562926 PE=4 SV=1,44.76,1e-18,
,CUFF.14407.4
         (102 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g023955.1 | small RNA degrading nuclease | HC | chr1:77333...   175   8e-45
Medtr1g023955.2 | small RNA degrading nuclease | HC | chr1:77335...   175   8e-45
Medtr1g423960.1 | small RNA degrading nuclease | HC | chr1:76987...   171   2e-43

>Medtr1g023955.1 | small RNA degrading nuclease | HC |
           chr1:7733337-7739883 | 20130731
          Length = 550

 Score =  175 bits (444), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 81/102 (79%), Positives = 94/102 (92%)

Query: 1   MDDKIDAADKKVLVDIVKLSQKRGMKGNLGDWKEFLNSYDKKFGASMSDPAKRTHEVLAA 60
           MD+KID A+KKVLVDIVKL QK+GMKG +GDWKEFLNS DKKFGA MSDP+KR+HEVLAA
Sbjct: 1   MDEKIDTAEKKVLVDIVKLVQKKGMKGKMGDWKEFLNSNDKKFGAGMSDPSKRSHEVLAA 60

Query: 61  FLKTFSMEDDLKFFGNIMRHHSSQYSVEKLKDKSHDSPEQGL 102
           FLKTFS ++DLKFFGNIMRHHS+QY++E+LKD+S DSPEQ L
Sbjct: 61  FLKTFSKDEDLKFFGNIMRHHSNQYTLERLKDRSQDSPEQRL 102


>Medtr1g023955.2 | small RNA degrading nuclease | HC |
           chr1:7733526-7739883 | 20130731
          Length = 550

 Score =  175 bits (444), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 81/102 (79%), Positives = 94/102 (92%)

Query: 1   MDDKIDAADKKVLVDIVKLSQKRGMKGNLGDWKEFLNSYDKKFGASMSDPAKRTHEVLAA 60
           MD+KID A+KKVLVDIVKL QK+GMKG +GDWKEFLNS DKKFGA MSDP+KR+HEVLAA
Sbjct: 1   MDEKIDTAEKKVLVDIVKLVQKKGMKGKMGDWKEFLNSNDKKFGAGMSDPSKRSHEVLAA 60

Query: 61  FLKTFSMEDDLKFFGNIMRHHSSQYSVEKLKDKSHDSPEQGL 102
           FLKTFS ++DLKFFGNIMRHHS+QY++E+LKD+S DSPEQ L
Sbjct: 61  FLKTFSKDEDLKFFGNIMRHHSNQYTLERLKDRSQDSPEQRL 102


>Medtr1g423960.1 | small RNA degrading nuclease | HC |
           chr1:7698717-7697338 | 20130731
          Length = 101

 Score =  171 bits (433), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 80/100 (80%), Positives = 93/100 (93%)

Query: 1   MDDKIDAADKKVLVDIVKLSQKRGMKGNLGDWKEFLNSYDKKFGASMSDPAKRTHEVLAA 60
           MD+KID A+KKVLVDIVKL QK+GMKG +GDWKEFLNS DKKFGA MSDP+KR+HEVLAA
Sbjct: 1   MDEKIDTAEKKVLVDIVKLVQKKGMKGKMGDWKEFLNSNDKKFGAGMSDPSKRSHEVLAA 60

Query: 61  FLKTFSMEDDLKFFGNIMRHHSSQYSVEKLKDKSHDSPEQ 100
           FLKTFS ++DLKFFGNIMRHHS+QY++E+LKD+S DSPEQ
Sbjct: 61  FLKTFSKDEDLKFFGNIMRHHSNQYTLERLKDRSQDSPEQ 100