Miyakogusa Predicted Gene

Lj0g3v0221429.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0221429.1 tr|K1ZDN5|K1ZDN5_9BACT RNA binding S1 protein
OS=uncultured bacterium PE=4 SV=1,32.52,2e-18,Ribosomal protein
S1-like RNA-binding domain,RNA-binding domain, S1; seg,NULL; S1
RNA-BINDING DOMAIN,CUFF.14365.1
         (401 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g084860.1 | S1 RNA-binding domain protein | HC | chr3:3833...   482   e-136
Medtr2g033020.1 | 30S ribosomal protein S1 | HC | chr2:12449707-...    83   5e-16
Medtr8g097290.1 | heat shock transcription factor 8, putative | ...    77   4e-14
Medtr1g097610.1 | 30S ribosomal protein S1 | HC | chr1:44033341-...    56   7e-08
Medtr6g088270.1 | elongation factor Ts protein | HC | chr6:33420...    55   1e-07

>Medtr3g084860.1 | S1 RNA-binding domain protein | HC |
           chr3:38332018-38337733 | 20130731
          Length = 399

 Score =  482 bits (1241), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 243/359 (67%), Positives = 288/359 (80%), Gaps = 2/359 (0%)

Query: 43  KCPHKFTVKTXXXXXXXXXXXXXXTAKTSVSGNTQIDQNPETGILRRPSVSDPLQDDPRQ 102
           KCPHK                    + +S S NT ID+  ++G+L+RPS  D   D  RQ
Sbjct: 40  KCPHKLPPPCQWHPHYRHHNPKIMVSSSSSSNNTHIDEF-DSGLLQRPSAPDSY-DALRQ 97

Query: 103 ARKLSDWKAAKAYKESGLVYSGRVEGFNGGGLLVRFYSILGFLPYPQLSPMHSCKEPEKT 162
           AR+ SDWKAA AY++SGL+Y+GRVEGFN GGLLVRFYSI+GFLPYPQLSP+HSC+EP++T
Sbjct: 98  ARRSSDWKAANAYRDSGLIYNGRVEGFNAGGLLVRFYSIMGFLPYPQLSPVHSCQEPDQT 157

Query: 163 IQEIAKGLVGSVMPVKVILADDDKTKLIFSEKEAAYSKFSKQVKVGDIFEAKVGSVEDYG 222
           I+E A+ L+G+++ VKVI+ D++K KL+ SEKEA++ K SK + +GD+FE +VGSVEDYG
Sbjct: 158 IKERARELIGAILSVKVIIVDEEKRKLVLSEKEASWFKHSKHINIGDLFEGRVGSVEDYG 217

Query: 223 AFVHLRFPDGLYHLTGLIHISEVSWDLVQDVRDFLTDGDEVRVKVINIDSGKSRITLSMK 282
           AFVHLRFPDGLYHLTGLIHISEVSWDLVQDVRDFL +G+EVRVKVI+ID+ K R+TLS+K
Sbjct: 218 AFVHLRFPDGLYHLTGLIHISEVSWDLVQDVRDFLREGEEVRVKVISIDTVKMRLTLSIK 277

Query: 283 QLEEDPLLETLDKVIPQXXXXXXXXXXXXXXXXIEPLPGLESILEERLQEDGIYDARISR 342
           QLEEDPLLETLDKVI Q                I+PLPGL++ILEE LQEDGI +ARISR
Sbjct: 278 QLEEDPLLETLDKVIRQDGSGVPNSISSTTSSPIDPLPGLDTILEELLQEDGINEARISR 337

Query: 343 QGFEKRVVSQDLQLWLSNAPPTNQRFTLLARAGRQVQEIHLTTSLDQEGIKKALQRVLE 401
           QGFEKRVVSQDLQLWLSNAPP +QRFTLLARAGRQVQEIHL TSLDQEGIKKA+QRVLE
Sbjct: 338 QGFEKRVVSQDLQLWLSNAPPMDQRFTLLARAGRQVQEIHLKTSLDQEGIKKAIQRVLE 396


>Medtr2g033020.1 | 30S ribosomal protein S1 | HC |
           chr2:12449707-12453501 | 20130731
          Length = 409

 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 94/180 (52%), Gaps = 17/180 (9%)

Query: 109 WKAAKAYKESGLVYSGRVEGFNGGGLLVRFYSILGFLPYPQLSPMHSCKEPEKTIQEIAK 168
           W+  +  +    V  G++   N GG++     + GF+P+ Q+S     K P + I E   
Sbjct: 170 WERCRQLQAEDAVVKGKIIDANKGGVVAEVEGLKGFVPFSQMS----TKSPGEEIIEFE- 224

Query: 169 GLVGSVMPVKVILADDDKTKLIFSEKEAAYSKFSKQVKVGDIFEAKVGSVEDYGAFVHLR 228
                 +P+K +  D ++ +L+ S ++A  +    Q+ +G +    V S++ YGAF+ + 
Sbjct: 225 ------VPLKFVEVDQEQARLVLSHRKAV-AGIQGQLGIGSVVTGTVQSLKPYGAFIDIG 277

Query: 229 FPDGLYHLTGLIHISEVSWDLVQDVRDFLTDGDEVRVKVINIDSGKSRITLSMKQLEEDP 288
                  ++GL+H+S++S D + D+   L  GD ++V +++ D  + R++LS K+LE  P
Sbjct: 278 -----GGISGLLHVSQISHDRISDIVTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 332


>Medtr8g097290.1 | heat shock transcription factor 8, putative | HC
           | chr8:40760661-40752107 | 20130731
          Length = 888

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 115/245 (46%), Gaps = 45/245 (18%)

Query: 169 GLVGSVMPVKVILADDDKTKLIFSEKEAAYSKFSKQ-------VKVGDIFEAKVGSVEDY 221
             +G  +   V+L+D    +LIFS K     + +++       ++VGDI + ++  +  +
Sbjct: 658 SFIGQQIKAYVLLSDRKLKRLIFSLKAKENEELTEKKRNLMARLQVGDIVKCRIQKITYF 717

Query: 222 GAFVHLRFPDGLYHLTGLIHISEVSWDLVQDVRDFLTDGDEVRVKVINIDSGKSRITLSM 281
           G FV +        ++ LIH SE+SWD   D  ++      V  KV  I+S   RI LS+
Sbjct: 718 GIFVEVE------GVSALIHQSEISWDSTLDPSNYFKIDQAVEAKVHQINSALGRIFLSL 771

Query: 282 KQLEEDPLLETLDKVIPQXXXXXXXXXXXXXXXXIEPLPG-------------LESILEE 328
           K++  DPL+ +L+ V+                   EP  G             +ES+++E
Sbjct: 772 KEVTPDPLMNSLESVVGDH----------------EPFDGRLEAAQTDVEWSEVESLIKE 815

Query: 329 RLQEDGIYDARISRQGFEKRVVSQDLQLWLSNAPPTNQRFTLLARAGRQVQEIHLTTSLD 388
             + +GI      R  F    ++   Q+++++      ++ LLAR+  ++QE+ + TSLD
Sbjct: 816 LQKIEGIQSVSKGR-FFRSPGLAPTFQVYMASI--FENQYKLLARSENKIQEVMVQTSLD 872

Query: 389 QEGIK 393
           +E +K
Sbjct: 873 KEMMK 877


>Medtr1g097610.1 | 30S ribosomal protein S1 | HC |
           chr1:44033341-44028473 | 20130731
          Length = 511

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 96/206 (46%), Gaps = 18/206 (8%)

Query: 86  ILRRPSVSDPLQDDPRQARKLSDWKAAKAYKESGLVYSGRVEGFNGGGLLVRFYSILGFL 145
           +L R     PL    R  R+++ W   +  ++       R+  +N GGLL     +  FL
Sbjct: 265 VLGRTLSGRPLISTRRLFRRIA-WHRVRQIQQLNEPIEVRITEWNTGGLLTTIEGLRAFL 323

Query: 146 PYPQL-SPMHSCKEPEKTIQEIAKGLVGSVMPVKVILADDDKTKLIFSEKEAAYSKFSKQ 204
           P  +L + ++S  E ++         VG  M V++   D+ K  L+ SEK A    + ++
Sbjct: 324 PKAELVTRVNSFTELKEN--------VGRRMFVEITRIDEAKNSLVLSEKGAWEKAYLRE 375

Query: 205 VKVGDIFEAKVGSVEDYGAFVHLRFPDGLYHLTGLIHISEVSWDLVQDVRDFLTDGDEVR 264
              G + +  V  +  YGA + +    G  + +GL+H+S ++   V  V D L   ++V+
Sbjct: 376 ---GTLLDGTVKKIFPYGAQIKI----GKTNRSGLLHVSNITRAEVTSVSDVLFVDEKVK 428

Query: 265 VKVINIDSGKSRITLSMKQLEEDPLL 290
           V V+       +I+LS+  LE +P L
Sbjct: 429 VLVVR-SMFPDKISLSIADLESEPGL 453


>Medtr6g088270.1 | elongation factor Ts protein | HC |
           chr6:33420399-33413908 | 20130731
          Length = 1054

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 7/77 (9%)

Query: 208 GDIFEAKVGSVEDYGAFVHL-RFPDGLYHLTGLIHISEVSWDLVQDVRDFLTDGDEVRVK 266
           G  F  KV S++ +GAFV    F DGL      +HIS +S   V+DV   ++ G EV VK
Sbjct: 145 GAAFTGKVKSIQPFGAFVDFGAFTDGL------VHISMLSDSFVKDVSSVVSLGQEVTVK 198

Query: 267 VINIDSGKSRITLSMKQ 283
           VI +++   RI+LSM++
Sbjct: 199 VIEVNAETKRISLSMRE 215