Miyakogusa Predicted Gene

Lj0g3v0221259.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0221259.1 Non Characterized Hit- tr|Q5YJP1|Q5YJP1_HYAOR
Putative uncharacterized protein (Fragment)
OS=Hyacint,59.72,0.00000000000002,Rxt3,Histone deacetylation protein
Rxt3,CUFF.14345.1
         (180 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g077090.2 | histone deacetylation protein Rxt3 | HC | chr1...   357   4e-99
Medtr1g077090.1 | histone deacetylation protein Rxt3 | HC | chr1...   357   4e-99
Medtr6g065070.2 | histone deacetylation protein Rxt3 | HC | chr6...   313   7e-86
Medtr6g065070.1 | histone deacetylation protein Rxt3 | HC | chr6...   313   7e-86

>Medtr1g077090.2 | histone deacetylation protein Rxt3 | HC |
           chr1:34396265-34403627 | 20130731
          Length = 821

 Score =  357 bits (915), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 166/180 (92%), Positives = 174/180 (96%)

Query: 1   MQELIKLWKEYESSQSQMEKTAESSNNGPTLEIRIPSDYVTATNRQVRGGQLWGTDVYTY 60
           MQELIKLW EYESSQSQ+EK  ESS NGPTLEIRI S+YVTATNRQVRGGQLWGTDVYTY
Sbjct: 480 MQELIKLWTEYESSQSQIEKNGESSKNGPTLEIRISSEYVTATNRQVRGGQLWGTDVYTY 539

Query: 61  DSDLVAVLMHTGYCRPTATPPPAAIQELRATIRVLPPQDCYISTLRNNVRSRAWGAAIGC 120
           DSDLVAVLMHTGYCRPTA+PPPAAIQELRATIRVLPP+DCYISTLRNNVRSRAWGA IGC
Sbjct: 540 DSDLVAVLMHTGYCRPTASPPPAAIQELRATIRVLPPKDCYISTLRNNVRSRAWGAKIGC 599

Query: 121 SYRVDRCCIVKKGGGTIDLEPCLTHTSTIEPTLAPVAVERTMTTRAAASNALRQQKFVRE 180
           SYR++RCCIVKKGGGTIDLEPCLTHTSTIEPTLAPVAVERTMTTRAAASNALRQQ++VRE
Sbjct: 600 SYRIERCCIVKKGGGTIDLEPCLTHTSTIEPTLAPVAVERTMTTRAAASNALRQQRYVRE 659


>Medtr1g077090.1 | histone deacetylation protein Rxt3 | HC |
           chr1:34396245-34403627 | 20130731
          Length = 821

 Score =  357 bits (915), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 166/180 (92%), Positives = 174/180 (96%)

Query: 1   MQELIKLWKEYESSQSQMEKTAESSNNGPTLEIRIPSDYVTATNRQVRGGQLWGTDVYTY 60
           MQELIKLW EYESSQSQ+EK  ESS NGPTLEIRI S+YVTATNRQVRGGQLWGTDVYTY
Sbjct: 480 MQELIKLWTEYESSQSQIEKNGESSKNGPTLEIRISSEYVTATNRQVRGGQLWGTDVYTY 539

Query: 61  DSDLVAVLMHTGYCRPTATPPPAAIQELRATIRVLPPQDCYISTLRNNVRSRAWGAAIGC 120
           DSDLVAVLMHTGYCRPTA+PPPAAIQELRATIRVLPP+DCYISTLRNNVRSRAWGA IGC
Sbjct: 540 DSDLVAVLMHTGYCRPTASPPPAAIQELRATIRVLPPKDCYISTLRNNVRSRAWGAKIGC 599

Query: 121 SYRVDRCCIVKKGGGTIDLEPCLTHTSTIEPTLAPVAVERTMTTRAAASNALRQQKFVRE 180
           SYR++RCCIVKKGGGTIDLEPCLTHTSTIEPTLAPVAVERTMTTRAAASNALRQQ++VRE
Sbjct: 600 SYRIERCCIVKKGGGTIDLEPCLTHTSTIEPTLAPVAVERTMTTRAAASNALRQQRYVRE 659


>Medtr6g065070.2 | histone deacetylation protein Rxt3 | HC |
           chr6:24088971-24097484 | 20130731
          Length = 739

 Score =  313 bits (801), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 146/178 (82%), Positives = 160/178 (89%)

Query: 3   ELIKLWKEYESSQSQMEKTAESSNNGPTLEIRIPSDYVTATNRQVRGGQLWGTDVYTYDS 62
           ELIKLWKEYESSQSQ EK AE+SN+GPTLEIRIP++ VTATN QVRG QLWGTDVYTYDS
Sbjct: 400 ELIKLWKEYESSQSQAEKNAETSNDGPTLEIRIPAENVTATNHQVRGAQLWGTDVYTYDS 459

Query: 63  DLVAVLMHTGYCRPTATPPPAAIQELRATIRVLPPQDCYISTLRNNVRSRAWGAAIGCSY 122
           DLVAVLMHTGYCRPT + PP+AIQELR  IRVLPPQDCYISTLRNNVRSRAWGA+ GCS+
Sbjct: 460 DLVAVLMHTGYCRPTVSRPPSAIQELRTCIRVLPPQDCYISTLRNNVRSRAWGASTGCSF 519

Query: 123 RVDRCCIVKKGGGTIDLEPCLTHTSTIEPTLAPVAVERTMTTRAAASNALRQQKFVRE 180
           RV+ CCIVKK GGTIDLEPC T+TS IEPTL P+AVER +TTRAAASN  R+Q+FVRE
Sbjct: 520 RVEWCCIVKKSGGTIDLEPCHTYTSAIEPTLVPMAVERAITTRAAASNTSRKQRFVRE 577


>Medtr6g065070.1 | histone deacetylation protein Rxt3 | HC |
           chr6:24088971-24097484 | 20130731
          Length = 739

 Score =  313 bits (801), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 146/178 (82%), Positives = 160/178 (89%)

Query: 3   ELIKLWKEYESSQSQMEKTAESSNNGPTLEIRIPSDYVTATNRQVRGGQLWGTDVYTYDS 62
           ELIKLWKEYESSQSQ EK AE+SN+GPTLEIRIP++ VTATN QVRG QLWGTDVYTYDS
Sbjct: 400 ELIKLWKEYESSQSQAEKNAETSNDGPTLEIRIPAENVTATNHQVRGAQLWGTDVYTYDS 459

Query: 63  DLVAVLMHTGYCRPTATPPPAAIQELRATIRVLPPQDCYISTLRNNVRSRAWGAAIGCSY 122
           DLVAVLMHTGYCRPT + PP+AIQELR  IRVLPPQDCYISTLRNNVRSRAWGA+ GCS+
Sbjct: 460 DLVAVLMHTGYCRPTVSRPPSAIQELRTCIRVLPPQDCYISTLRNNVRSRAWGASTGCSF 519

Query: 123 RVDRCCIVKKGGGTIDLEPCLTHTSTIEPTLAPVAVERTMTTRAAASNALRQQKFVRE 180
           RV+ CCIVKK GGTIDLEPC T+TS IEPTL P+AVER +TTRAAASN  R+Q+FVRE
Sbjct: 520 RVEWCCIVKKSGGTIDLEPCHTYTSAIEPTLVPMAVERAITTRAAASNTSRKQRFVRE 577