Miyakogusa Predicted Gene

Lj0g3v0220649.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0220649.1 Non Characterized Hit- tr|Q9SLF0|Q9SLF0_ARATH
Putative retroelement pol polyprotein OS=Arabidopsis
t,50,0.005,GAG-POL-RELATED RETROTRANSPOSON,NULL;
UBN2_3,NULL,CUFF.14288.1
         (292 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g039280.1 | hypothetical protein | LC | chr7:14583454-1458...    89   3e-18
Medtr4g048330.1 | hypothetical protein | LC | chr4:17127732-1712...    87   1e-17
Medtr6g477740.1 | hypothetical protein | LC | chr6:28521730-2852...    65   9e-11
Medtr5g007160.1 | hypothetical protein | LC | chr5:1226844-12262...    58   1e-08
Medtr2g039460.1 | hypothetical protein | LC | chr2:17293425-1729...    51   1e-06

>Medtr7g039280.1 | hypothetical protein | LC |
           chr7:14583454-14584237 | 20130731
          Length = 227

 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 78/143 (54%), Gaps = 10/143 (6%)

Query: 156 LKALWDELANHEPALTCTC-KGCKCGLAAKIEKRKEEEQGHMFLMGLDDGLYGTIRSNVL 214
           +K+LW+EL++H P   C C   C+C  +   +  + E+Q   FL GL+D  +  +R+ VL
Sbjct: 1   MKSLWEELSSHRPIPNCACVHPCRCASSKVAKIHRNEDQIMQFLTGLNDQ-FSVVRTQVL 59

Query: 215 ATDPLPSLNKMYSILVQEESVRNRPQTREERPEVMALAAQAS--MKARG-----RENKID 267
             DPLPSLNK+YS++VQEES  N   T+    E  ++   A+   K++G      + K  
Sbjct: 60  LVDPLPSLNKVYSLVVQEES-NNASITQLSVSEDTSIQVNATDNRKSQGGVKSFSQPKPT 118

Query: 268 SFCSNCNKKGHDEAGCFEIIGYP 290
            FC+ CN   H    C+   GYP
Sbjct: 119 RFCTFCNCTNHTVDFCYMKHGYP 141


>Medtr4g048330.1 | hypothetical protein | LC |
           chr4:17127732-17129246 | 20130731
          Length = 422

 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 11/147 (7%)

Query: 154 GKLKALWDELANHEPALTCTCK-GCKCGLAAKIEKRKEEEQGHMFLMGLDDGLYGTIRSN 212
            K+K+LW+EL +H P   CTC   C+C       + + E+Q   FL GL D  +  +++ 
Sbjct: 81  NKMKSLWEELNSHRPMHVCTCPYPCRCESMRAAREFRMEDQVIQFLTGLHDN-FSVVKTQ 139

Query: 213 VLATDPLPSLNKMYSILVQEESVRNRPQTREERPEVMALAAQASMKARGR---------E 263
           VL  DPLPS+NK+YS++VQEES    P         + + A  + K  GR          
Sbjct: 140 VLLMDPLPSINKVYSMVVQEESNNTAPPPISIEDSSILVNALDARKLYGRGKSPSGYSQS 199

Query: 264 NKIDSFCSNCNKKGHDEAGCFEIIGYP 290
                +C+ C++  H    C++  GYP
Sbjct: 200 KNTSRYCTFCHRNNHTVDFCYQKHGYP 226


>Medtr6g477740.1 | hypothetical protein | LC |
           chr6:28521730-28520619 | 20130731
          Length = 267

 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 36/120 (30%)

Query: 115 EIWEDIKERFSVVNGPRIQQLKSELAQCKQGNLSIVAYYGKLKALWDELANHEPALTCTC 174
           ++WED+KERFS  +  RI  L+S +   KQG  ++   Y                     
Sbjct: 30  DVWEDLKERFSKADRIRISSLRSCINNLKQGASTLAHVY--------------------- 68

Query: 175 KGCKCGLAAKIEKRKEEEQGHMFLMGLDDGLYGTIRSNVLATDPLPSLNKMYSILVQEES 234
                         + E+Q   FL+GL+D  +  +++ +L  DPLPSLNK+YS+++QEES
Sbjct: 69  --------------RVEDQIMQFLIGLNDQ-FSIVKTQILLMDPLPSLNKVYSLVIQEES 113


>Medtr5g007160.1 | hypothetical protein | LC | chr5:1226844-1226222
           | 20130731
          Length = 176

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 156 LKALWDELANHEPALTCTCKG-CKCGLAAKIEKRKEEEQGHMFLMGLDDGLYGTIRSNVL 214
           +K LW EL +  P  +C+C   C C L+  +   K  E    FL GL+   Y  +R+ +L
Sbjct: 1   MKILWYELEDLRPTPSCSCVNPCTCSLSNYVHNYKNMEYIICFLKGLNAN-YSNVRTQIL 59

Query: 215 ATDPLPSLNKMYSILVQE 232
             DPLPS++K+YS + Q+
Sbjct: 60  LMDPLPSISKVYSSVSQQ 77


>Medtr2g039460.1 | hypothetical protein | LC |
           chr2:17293425-17293724 | 20130731
          Length = 99

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 31/50 (62%)

Query: 127 VNGPRIQQLKSELAQCKQGNLSIVAYYGKLKALWDELANHEPALTCTCKG 176
           +NG  I QL  EL +C  G+LS+  Y+ K+K LW+E+  + P  TC C G
Sbjct: 8   INGLHIFQLWCELIECTLGSLSMSDYFTKIKGLWEEINEYNPIHTCNCGG 57