Miyakogusa Predicted Gene

Lj0g3v0219899.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0219899.1 Non Characterized Hit- tr|D7SKB9|D7SKB9_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,42.42,4e-18,seg,NULL,CUFF.14223.1
         (186 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g097680.1 | transmembrane protein, putative | HC | chr2:41...    67   7e-12
Medtr1g071380.1 | transmembrane protein, putative | HC | chr1:31...    67   9e-12

>Medtr2g097680.1 | transmembrane protein, putative | HC |
           chr2:41727711-41724777 | 20130731
          Length = 183

 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 111 SVFISALFFVAFIGLSVITFGVVYLGVKDFLQXXXXXXXXXXXXXXXXXXXXXXVVRARA 170
           S+ +SALFF+AFIGLSVIT GV+YL V DFL                           RA
Sbjct: 110 SIIVSALFFIAFIGLSVITIGVIYLAVTDFLT--KREKEKFEKEEAASGKKKRKRKVVRA 167

Query: 171 GPKGFGQKIDKDEDDD 186
           GPKGFGQKI + EDDD
Sbjct: 168 GPKGFGQKIVQTEDDD 183


>Medtr1g071380.1 | transmembrane protein, putative | HC |
           chr1:31682586-31681709 | 20130731
          Length = 164

 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 43/76 (56%), Gaps = 3/76 (3%)

Query: 111 SVFISALFFVAFIGLSVITFGVVYLGVKDFLQXXXXXXXXXXXXXXXXXXXXXXVVRARA 170
           S+ +SALFF+AFIGLSVIT GV+YL V DFL                           RA
Sbjct: 92  SIIVSALFFIAFIGLSVITIGVIYLAVTDFL---TKREKEKFEKEEAASGKKKKRKVVRA 148

Query: 171 GPKGFGQKIDKDEDDD 186
           GPKGFGQKI + EDDD
Sbjct: 149 GPKGFGQKIVQTEDDD 164