Miyakogusa Predicted Gene

Lj0g3v0219829.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0219829.1 tr|D7L8S1|D7L8S1_ARALL Peptidoglycan-binding LysM
domain-containing protein OS=Arabidopsis lyrata su,36.27,2e-18,no
description,NULL; LysM domain,NULL; Lysin motif,Peptidoglycan-binding
Lysin subgroup; seg,NULL; L,CUFF.14224.1
         (289 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g072410.1 | LysM domain GPI-anchored protein | HC | chr3:3...   356   2e-98
Medtr4g094730.2 | LysM domain GPI-anchored protein | HC | chr4:3...    80   2e-15
Medtr4g094730.1 | LysM domain GPI-anchored protein | HC | chr4:3...    79   4e-15

>Medtr3g072410.1 | LysM domain GPI-anchored protein | HC |
           chr3:32553629-32557165 | 20130731
          Length = 412

 Score =  356 bits (913), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 170/207 (82%), Positives = 188/207 (90%)

Query: 9   SXTDPSVLDVGQSLVVPLPCTCFNGSDNSLPAIYLSYVVQPVDSLAAIAARYLTTLTDLM 68
           S TDP+VLDVGQ+LVVPLPCTCFNGSDN LPAIY+SYVVQP+DSL  IAARY TTLTDLM
Sbjct: 136 SVTDPNVLDVGQNLVVPLPCTCFNGSDNGLPAIYMSYVVQPLDSLNNIAARYFTTLTDLM 195

Query: 69  NVNAMGSTAISDGDILAVPIPACASNFPKSASDFGLLVPNGSYAITAGHCVQCSCGPRNL 128
           NVNAMG+T IS GDILA+PIPACAS FPK ++DFGLLVPNGSYAITAGHCVQCSCGPRNL
Sbjct: 196 NVNAMGTTGISAGDILAIPIPACASKFPKDSADFGLLVPNGSYAITAGHCVQCSCGPRNL 255

Query: 129 NLYCMPTSLSASCSSMQCKNSNLMLGNVTAQQSSAGCNVSSCSYDGLVNGTIATTLSASL 188
           NLYCMP SL+ SCSSMQCK+SNLMLGNVT QQ+S GCNV+SC+YDG+VNGTIATTL+ SL
Sbjct: 256 NLYCMPASLAVSCSSMQCKSSNLMLGNVTVQQTSGGCNVTSCTYDGIVNGTIATTLTPSL 315

Query: 189 QPRCPGLQEFPPLVAPPTSVEKDPTFA 215
           QPRCPG QEFPPL+APPT V ++  FA
Sbjct: 316 QPRCPGSQEFPPLIAPPTVVPRESLFA 342


>Medtr4g094730.2 | LysM domain GPI-anchored protein | HC |
           chr4:38856087-38857662 | 20130731
          Length = 333

 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 101/194 (52%), Gaps = 21/194 (10%)

Query: 12  DPSVLDVGQSLVVPLPCTC--FNGSDNSLPAIYLSYVVQPVDSLAAIAARYLTTLTDLMN 69
           D + +  G ++ +PLPC+C   +G+      ++ +++V    S+ +IA +Y  +   L++
Sbjct: 150 DANNITAGATIWIPLPCSCDPVDGTS----VMHYAHIVPMGSSIQSIAQQYAISQQTLLS 205

Query: 70  VNAMGS-TAISDGDILAVPIPACASNFPKSASDFGLLVPNGSYAITAGHCVQCSCGP--R 126
           +N +     +  G +L VP+P C S+    + DF LLVPN +Y  TA  CV+C C     
Sbjct: 206 LNDLDDPKNLLAGQLLDVPLPVCNSSIKSDSLDFPLLVPNATYFYTAHECVKCKCDSTGD 265

Query: 127 NLNLYCMPTSLS-----ASCSSMQCKNSNLMLGNVTAQQSSAGCNVSSCSYDGLVNG-TI 180
           N NL C  ++L      + C S++C  S ++LGN T+  S   C+   C Y G  +   I
Sbjct: 266 NKNLQCEASNLKPINNWSVCPSLKCSGS-VLLGNTTSTDS---CSRRVCDYTGYTSSRNI 321

Query: 181 ATTLSASLQPRCPG 194
           +TTL+   Q  C G
Sbjct: 322 STTLAT--QNTCAG 333


>Medtr4g094730.1 | LysM domain GPI-anchored protein | HC |
           chr4:38855907-38858583 | 20130731
          Length = 372

 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 19/185 (10%)

Query: 12  DPSVLDVGQSLVVPLPCTC--FNGSDNSLPAIYLSYVVQPVDSLAAIAARYLTTLTDLMN 69
           D + +  G ++ +PLPC+C   +G+      ++ +++V    S+ +IA +Y  +   L++
Sbjct: 150 DANNITAGATIWIPLPCSCDPVDGTS----VMHYAHIVPMGSSIQSIAQQYAISQQTLLS 205

Query: 70  VNAMGS-TAISDGDILAVPIPACASNFPKSASDFGLLVPNGSYAITAGHCVQCSCGP--R 126
           +N +     +  G +L VP+P C S+    + DF LLVPN +Y  TA  CV+C C     
Sbjct: 206 LNDLDDPKNLLAGQLLDVPLPVCNSSIKSDSLDFPLLVPNATYFYTAHECVKCKCDSTGD 265

Query: 127 NLNLYCMPTSLS-----ASCSSMQCKNSNLMLGNVTAQQSSAGCNVSSCSYDGLVNG-TI 180
           N NL C  ++L      + C S++C  S ++LGN T+  S   C+   C Y G  +   I
Sbjct: 266 NKNLQCEASNLKPINNWSVCPSLKCSGS-VLLGNTTSTDS---CSRRVCDYTGYTSSRNI 321

Query: 181 ATTLS 185
           +TTL+
Sbjct: 322 STTLA 326