Miyakogusa Predicted Gene

Lj0g3v0219279.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0219279.1 tr|B6UDA2|B6UDA2_MAIZE Harpin-induced protein
OS=Zea mays PE=2 SV=1,27.23,6e-19,seg,NULL; LEA_2,Late embryogenesis
abundant protein, LEA-14,NODE_45710_length_1044_cov_36.521072.path1.1
         (237 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g096680.1 | late embryogenesis abundant protein | HC | chr...   290   6e-79
Medtr8g089695.1 | transmembrane protein, putative | HC | chr8:37...   128   5e-30
Medtr8g072140.1 | late embryogenesis abundant protein | HC | chr...    74   1e-13
Medtr2g011350.1 | late embryogenesis abundant protein | HC | chr...    55   5e-08
Medtr5g087760.1 | late embryogenesis abundant hydroxyproline-ric...    50   2e-06
Medtr3g102440.1 | transmembrane protein, putative | LC | chr3:47...    49   5e-06
Medtr7g106130.1 | transmembrane protein, putative | HC | chr7:43...    48   6e-06

>Medtr5g096680.1 | late embryogenesis abundant protein | HC |
           chr5:42286627-42285582 | 20130731
          Length = 238

 Score =  290 bits (743), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 132/215 (61%), Positives = 172/215 (80%)

Query: 23  SDEPRNQQYSHTNSTSKLPALWQPRHQKTKPVIWFAAVLCLIFSLVLIFFGIATLIIYLS 82
           S +P+NQ    T S+ KL  L     QKTKP++WFAA+LC IFS  LIFFGIAT+I YL+
Sbjct: 24  SKQPKNQHPLRTRSSRKLAILKVDDQQKTKPIVWFAAILCFIFSFTLIFFGIATIICYLT 83

Query: 83  FKPRNPIFDIPNASLNVVYFDSTSYLNGEFAFLANFTNPNSRIHVRFESLKIELFFSDRL 142
            KP NP+FDI NASLNVVYFDS  Y NG+FA  ANF+NPN ++HV+FESL I+LF+S+R+
Sbjct: 84  LKPSNPLFDISNASLNVVYFDSKQYFNGDFALQANFSNPNRKVHVKFESLYIQLFYSNRV 143

Query: 143 ISSQSIKPFTQRPRETRLQSVKLMSNLMFLPQDVGVKLQGQVQSNRVNYYARGTYKVRFN 202
           I+SQSIKPFTQ+P+ETR ++V+ +S L+F+PQ+VGV+LQ ++Q+NR++ YA+GT+KV+ N
Sbjct: 144 IASQSIKPFTQKPKETRYETVRFISTLLFMPQEVGVRLQRELQNNRLSCYAKGTFKVKVN 203

Query: 203 MGHIHLSHWLHSVCHIEMNGPPNGVLLARECTTWR 237
           M  +H S WLHSVC IEM GPPNG L+AR+C T R
Sbjct: 204 MWILHSSFWLHSVCQIEMTGPPNGSLVARQCITTR 238


>Medtr8g089695.1 | transmembrane protein, putative | HC |
           chr8:37336287-37334903 | 20130731
          Length = 394

 Score =  128 bits (321), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 71/193 (36%), Positives = 116/193 (60%), Gaps = 1/193 (0%)

Query: 46  PRHQKTKPVIWFAAVLCLIFSLVLIFFGIATLIIYLSFKPRNPIFDIPNASLNVVYFDST 105
           P+ QK+ P+ W  A LC+IF L++I  GI  LI+YL F+P+ P FD+ + +LN  Y D  
Sbjct: 202 PKEQKSPPLTWMGACLCVIFWLIIIIGGIIVLIVYLVFRPQIPHFDVSSVTLNAAYLDVG 261

Query: 106 SYLNGEFAFLANFTNPNSRIHVRFESLKIELFFSDRLISSQSIKPFTQRPRETRLQSVKL 165
             LN +   L NFTNPN ++HV F S+ I L++   LI++Q ++PF+    ++R   + +
Sbjct: 262 YLLNADLTMLTNFTNPNKKVHVDFSSVIIYLYYGSTLIATQYVEPFSAARVQSRFAYIHM 321

Query: 166 MSNLMFLPQDVGVKLQGQVQSNRVNYYARGTYKVRFNMGHI-HLSHWLHSVCHIEMNGPP 224
           +++ + LP +   +L  Q++SN V    RG ++ R  +G I   S+ L+  C I +  PP
Sbjct: 322 VTSQVQLPLNEAQRLVKQMESNGVLLEVRGVFRARSKLGTILRYSYNLYGRCSIMVARPP 381

Query: 225 NGVLLARECTTWR 237
            G+++ R+C T R
Sbjct: 382 EGIMMKRKCRTKR 394


>Medtr8g072140.1 | late embryogenesis abundant protein | HC |
           chr8:30451261-30450505 | 20130731
          Length = 203

 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 86/187 (45%), Gaps = 4/187 (2%)

Query: 51  TKPVIWFAAVLCLIFSLVLIFFGIATLIIYLSFKPRNPIFDIPNASLNVVYFDSTSYLNG 110
           TKP +W AA++C IF++ +   GI   I Y+   PR PI  + NA L+++  D    L  
Sbjct: 16  TKPFVWLAAIICTIFAIAVTITGIVVFIGYILIHPRAPIISVTNAHLDLLRNDHAGLLQT 75

Query: 111 EFAFLANFTNPNSRIHVRFESLKIELFFSDRLISSQSIKPFTQRPRETR-LQSVKLMSNL 169
           + + +    N N++ H  F  +   L F  + I+      F      T  L+ V   S++
Sbjct: 76  QLSIVVTAYNGNAKAHATFSKITFSLSFQGQGIAMLVADSFDVPKNSTNDLRYVVQSSSI 135

Query: 170 MFLPQDVGVKLQGQVQSNRVNYYARGTYKVRFNMGHIH-LSHWLHSVCHIEMNGPPNGVL 228
              P  +  K+    + N + +  +G  + R+ +G    + +  H  C+++   P NG  
Sbjct: 136 PLTPDQID-KIDESWKRNEIGFDFKGAARTRWRIGPFRSVKYSCHLNCYLKFR-PLNGSY 193

Query: 229 LARECTT 235
           +  +C++
Sbjct: 194 IHSKCSS 200


>Medtr2g011350.1 | late embryogenesis abundant protein | HC |
           chr2:2751617-2750551 | 20130731
          Length = 202

 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 69/138 (50%)

Query: 73  GIATLIIYLSFKPRNPIFDIPNASLNVVYFDSTSYLNGEFAFLANFTNPNSRIHVRFESL 132
           G+A LI +L  +P+N  + + +AS++       ++L   F F     NPNS++ + ++S+
Sbjct: 36  GLAVLISWLVVRPKNLQYSVEDASIHNFNLTDANHLYANFDFTIRSKNPNSKVSLYYDSI 95

Query: 133 KIELFFSDRLISSQSIKPFTQRPRETRLQSVKLMSNLMFLPQDVGVKLQGQVQSNRVNYY 192
           ++ + + D+ +++ +++PF Q  +       +L +  + L   V   L+ +  S  +   
Sbjct: 96  EVSVRYEDQTLATNAVQPFFQPHKNVTRMHARLTAQTVALYDSVPKDLKLERSSGDIALD 155

Query: 193 ARGTYKVRFNMGHIHLSH 210
                ++RF +G +   H
Sbjct: 156 VFIRARIRFKVGLLKTRH 173


>Medtr5g087760.1 | late embryogenesis abundant hydroxyproline-rich
           glycoprotein | HC | chr5:38059404-38058037 | 20130731
          Length = 255

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 14/187 (7%)

Query: 56  WFAAVLCLIFSLVLIFFGIATLIIYLSFKPRNPIFDIPNAS---LNVVYFDSTSYLNGEF 112
           WF  ++ ++ +L     GIA  I YL F+P+ P + I N +   +N+    ST+ ++ EF
Sbjct: 69  WFIGIIFILIAL----LGIAAGIFYLVFRPKAPNYTIENITIRGINITSPSSTTGISPEF 124

Query: 113 AFLANFTNPNSRIHVRFE-SLKIELFFSDRLISSQSIKPFTQRPRETRLQSVKLMSNLMF 171
                  NPN +I + +E     E+F+ D  + +  +  F Q      +    L  N + 
Sbjct: 125 DVTVKADNPNDKIGISYEKDSSAEIFYKDMRLCNGILPSFYQPSNNVTVFKTMLKGNGVK 184

Query: 172 LPQDVGVKLQGQVQSNRVNYYARGTYKVRFNMGHIHLSHWLHSV---CHIEMNG-PPNGV 227
           +  +    L        V    +    V+  +G +    W  +V   C + ++    N  
Sbjct: 185 MSSEDQRALVKAQTKQEVQLMVKLRAPVKIKVGSVKT--WKITVKVDCDLMVDKLTANAK 242

Query: 228 LLARECT 234
           +++R CT
Sbjct: 243 IVSRSCT 249


>Medtr3g102440.1 | transmembrane protein, putative | LC |
           chr3:47209877-47211149 | 20130731
          Length = 204

 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 75/149 (50%), Gaps = 14/149 (9%)

Query: 59  AVLCLIFSLVLIFFGIATLIIYL-SFKPRNPIFDIPNASLNVVYFDSTSYLNGEFAFLAN 117
             LC++F ++++ FG+    +Y  S  P+ P F + +ASLN +  +  S L+GE+     
Sbjct: 19  GCLCILF-IIVVAFGMLLFAVYDNSSHPKLPYFGVESASLNSLTMNG-SRLSGEWNINLT 76

Query: 118 FTNPNSRIH-VRFESLKIELFFSDR----LISSQSIKPFTQRPRETRLQSVKLMSNLMFL 172
           FTNPN+  +   + ++ + + +++     L++S  + PF+++   T L+ V+   +L   
Sbjct: 77  FTNPNNGWNEASYNTICVSILYNNEHNPSLLASTQLAPFSKKDDATVLKQVQFKMDLH-- 134

Query: 173 PQDVGVKLQGQVQSNRVNYYARGTYKVRF 201
                 +++       VN+    +  VRF
Sbjct: 135 ----DAEIERSFSCGAVNFEIEMSTSVRF 159


>Medtr7g106130.1 | transmembrane protein, putative | HC |
           chr7:43116316-43115264 | 20130731
          Length = 289

 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 4/109 (3%)

Query: 60  VLCLIFSLVLIFFGIATLIIYLSFKPRNPIFDIPNASLNVVYFDSTSYLNGEFAFLANFT 119
           ++C  F  +   F + TLI  LS  P+ P+F +   SL+V  F+++S L G++       
Sbjct: 104 IMCSCF--IFTGFFVLTLIAALSLHPQFPVFKV--VSLSVSNFNTSSILTGDWNISVTAE 159

Query: 120 NPNSRIHVRFESLKIELFFSDRLISSQSIKPFTQRPRETRLQSVKLMSN 168
           NPN+R+   F   K+++   +  ++   +  F     E +   VK  SN
Sbjct: 160 NPNTRLKGYFLDFKVDVVHDNNELAMSLVPDFELEKHEQKQMDVKASSN 208